Rh2BG099200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000336
Physical Location & Seq
Forward (+)
8207146 .. 8207595
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG099200.1

Sequence Viewer

Length: 450 bp
ATGCTAGTCTCGACTCCAAAGGCTCGAGTACGGAGGGCACTTCAACCTCGACCATTAGAGGAGGTTACTTCTAGTACTAAAGATGTAGCTGAGGATGATGGTCATGAGGGTCATGTGACAGTGGAATCGGCGAGGGAAGGAAAGGCTAGTGCAGATGGCCTGGAAGTCAGTGAAGAAGGTCAGAACCATGAACCTTCAACTGGGGAGCTAGTATTGGTTACGAAGACTCCAGTGGCTAGTTTGAGGAGGAACCAAATTGAGGAAGATAGAGTTTCTCCAAAGAAGCCAAGGCTCAGTCTAGCTATTGGTAGAACCAACTTGGATAATGTCACAGTAGGGTTAGTAGCTTTGAACCCTTCACAGGAGAGTAGAAAGAGGCGTGGTCGTCCTCGAGGTGCCAAGAACAAAGTGAAAGTTGATTGCAAGGTGGTGAAAACCTCACCCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.25

Weight (kDa)

9.71

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 395
AfaI GTAC 2 cut(s) 30, 76
AfiI CCNNNNNNNGG 3 cut(s) 200, 259, 361
AgsI TTSAA 3 cut(s) 44, 198, 352
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 4 cut(s) 89, 208, 302, 347
AluI AGCT 4 cut(s) 89, 208, 302, 347
Alw26I GTCTC 1 cut(s) 13
Ama87I CYCGRG 2 cut(s) 24, 390
AoxI GGCC 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 432, 442
AvaI CYCGRG 2 cut(s) 24, 390
BaeGI GKGCMC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 230
BbvCI CCTCAGC 1 cut(s) 90
BccI CCATC 2 cut(s) 92, 149
BciT130I CCWGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 6 cut(s) 5, 72, 147, 209, 237, 299
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 161
BmeT110I CYCGRG 2 cut(s) 24, 390
BmiI GGNNCC 2 cut(s) 251, 397
BmrFI CCNGG 1 cut(s) 161
BmrI ACTGGG 1 cut(s) 210
BmuI ACTGGG 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 287
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 259, 361
Bse1I ACTGG 2 cut(s) 205, 230
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 3 cut(s) 200, 259, 361
BseMII CTCAG 2 cut(s) 81, 307
BseNI ACTGG 2 cut(s) 205, 230
BseRI GAGGAG 2 cut(s) 74, 259
BseSI GKGCMC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 159
BshNI GGYRCC 1 cut(s) 395
BsiHKCI CYCGRG 2 cut(s) 24, 390
BslI CCNNNNNNNGG 3 cut(s) 200, 259, 361
BsmAI GTCTC 1 cut(s) 13
BsnI GGCC 1 cut(s) 159
BsoBI CYCGRG 2 cut(s) 24, 390
Bsp1286I GDGCHC 1 cut(s) 40
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 2 cut(s) 82, 306
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 251, 397
BspT107I GGYRCC 1 cut(s) 395
BsrI ACTGG 2 cut(s) 205, 230
BssECI CCNNGG 1 cut(s) 287
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 121, 334
BstDEI CTNAG 2 cut(s) 90, 293
BstF5I GGATG 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 159
BstSLI GKGCMC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 3 cut(s) 126, 175, 237
CciI TCATGA 1 cut(s) 103
Csp6I GTAC 2 cut(s) 29, 75
CviAII CATG 4 cut(s) 104, 113, 188, 445
CviQI GTAC 2 cut(s) 29, 75
DdeI CTNAG 2 cut(s) 90, 293
Eco130I CCWWGG 1 cut(s) 287
Eco88I CYCGRG 2 cut(s) 24, 390
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 4 cut(s) 107, 116, 191, 448
FaiI YATR 4 cut(s) 105, 114, 189, 446
FatI CATG 4 cut(s) 103, 112, 187, 444
FokI GGATG 1 cut(s) 107
FspBI CTAG 6 cut(s) 5, 72, 147, 209, 237, 299
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 4 cut(s) 107, 116, 191, 448
HinfI GANTC 3 cut(s) 13, 125, 226
HphI GGTGA 2 cut(s) 432, 442
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 2 cut(s) 10, 104
HpyAV CCTTC 4 cut(s) 131, 170, 204, 366
HpyCH4III ACNGT 2 cut(s) 121, 334
HpyCH4V TGCA 2 cut(s) 152, 423
HpyF3I CTNAG 2 cut(s) 90, 293
Hsp92II CATG 4 cut(s) 107, 116, 191, 448
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 5 cut(s) 146, 173, 186, 243, 347
MaeI CTAG 6 cut(s) 5, 72, 147, 209, 237, 299
MaeIII GTNAC 4 cut(s) 64, 115, 217, 328
MboII GAAGA 3 cut(s) 185, 235, 275
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 1 cut(s) 255
MlyI GAGTC 2 cut(s) 7, 220
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
NlaIII CATG 4 cut(s) 107, 116, 191, 448
NlaIV GGNNCC 2 cut(s) 251, 397
NmuCI GTSAC 2 cut(s) 115, 328
PaeR7I CTCGAG 2 cut(s) 24, 390
PagI TCATGA 1 cut(s) 103
PfeI GAWTC 1 cut(s) 125
PleI GAGTC 2 cut(s) 7, 220
PpsI GAGTC 2 cut(s) 7, 220
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 251, 397
PspXI VCTCGAGB 2 cut(s) 24, 390
RsaI GTAC 2 cut(s) 30, 76
RsaNI GTAC 2 cut(s) 29, 75
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 2 cut(s) 7, 220
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 40
Sfr274I CTCGAG 2 cut(s) 24, 390
SlaI CTCGAG 2 cut(s) 24, 390
SmlI CTYRAG 2 cut(s) 24, 390
SmoI CTYRAG 2 cut(s) 24, 390
Sse9I AATT 1 cut(s) 255
SspMI CTAG 6 cut(s) 5, 72, 147, 209, 237, 299
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 2 cut(s) 121, 334
TaqI TCGA 4 cut(s) 11, 25, 49, 391
TasI AATT 1 cut(s) 255
TatI WGTACW 1 cut(s) 74
TfiI GAWTC 1 cut(s) 125
TscAI CASTG 3 cut(s) 126, 175, 237
TseFI GTSAC 2 cut(s) 115, 328
Tsp45I GTSAC 2 cut(s) 115, 328
TspDTI ATGAA 1 cut(s) 204
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 3 cut(s) 126, 175, 237
XhoI CTCGAG 2 cut(s) 24, 390
XspI CTAG 6 cut(s) 5, 72, 147, 209, 237, 299
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.