Rmu_sc0000318.1_g000023

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000318.1
OG0000336
Physical Location & Seq
Forward (+)
68996 .. 70043
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000318.1_g000023.1.cds

Sequence Viewer

Length: 795 bp
atggatgcaatggacaagatggctgtgaggctagctgcttcgcttggttcgacttatagtaagaagctggttgatctccggccaccgagaggagaaggtctgcggcgctcgcagacgtatttggtatacggtgcaagacatgatgatcacttcctcttcacattatcagacctttcgaatcgaaaccgtatcctccatggcggtccttgggggtttgaccaggccccagtggtgttggcaccgtatgatggggtctgccagatcagcgcggtgcctctgaataccctggctttctgggtgaaggtcaaaggactccctccagaatttcattcggatcattgtctccggcgtcttggctgtgccctaagacagatcgatttaatgcagctggtagtgtttagacggtgcttcacagtggaagatggtttggatgtcgacttggaattcttctatgagaacatgtatggccgatgccgtgattgtgggagacttacccatgttagtctgccatgctcgggtccgtcgctggtggaggctttgagggacacagtatctctggtgcagcgcaacatggagcaagttctggttagggtggagaacacgtctactgctggtccattgatggtgttcggagcaggggatgggaatgaggtaagcagtgagggtggccaagataatgtcagcccgtttgaaaagctggagataagtggaggagatcacagcgtagaactatcttccggcgaggtgatgcaggaaaatgggacaacacaggtcatcggactgtggaggaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

264

Amino Acids

29.26

Weight (kDa)

5.66

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 238, 271
AccI GTMKAC 3 cut(s) 126, 435, 605
AccII CGCG 1 cut(s) 269
AciI CCGC 3 cut(s) 103, 201, 269
AclWI GGATC 1 cut(s) 342
AcoI YGGCCR 3 cut(s) 80, 466, 667
AcsI RAATTY 2 cut(s) 323, 443
AcyI GRCGYC 1 cut(s) 349
AfiI CCNNNNNNNGG 3 cut(s) 89, 248, 515
AflIII ACRYGT 2 cut(s) 459, 600
AgsI TTSAA 1 cut(s) 692
AjiI CACGTC 1 cut(s) 603
AjnI CCWGG 2 cut(s) 219, 285
AluBI AGCT 4 cut(s) 35, 67, 388, 697
AluI AGCT 4 cut(s) 35, 67, 388, 697
Alw26I GTCTC 2 cut(s) 347, 481
AlwI GGATC 1 cut(s) 342
Ama87I CYCGRG 1 cut(s) 514
AoxI GGCC 4 cut(s) 80, 222, 466, 667
ApeKI GCWGC 3 cut(s) 35, 385, 562
ApoI RAATTY 2 cut(s) 323, 443
AspLEI GCGC 3 cut(s) 108, 269, 567
AspS9I GGNCC 4 cut(s) 203, 223, 518, 614
AsuHPI GGTGA 2 cut(s) 310, 757
AsuII TTCGAA 1 cut(s) 176
AsuNHI GCTAGC 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 514
AvaII GGWCC 3 cut(s) 203, 518, 614
BaeGI GKGCMC 1 cut(s) 364
BalI TGGCCA 1 cut(s) 669
BanI GGYRCC 2 cut(s) 238, 271
BbvI GCAGC 3 cut(s) 22, 397, 574
BccI CCATC 5 cut(s) 13, 242, 416, 616, 635
BceAI ACGGC 1 cut(s) 459
BciT130I CCWGG 2 cut(s) 221, 287
BciVI GTATCC 1 cut(s) 200
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 347, 481
BfaI CTAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 109
BfuI GTATCC 1 cut(s) 200
BisI GCNGC 4 cut(s) 36, 104, 386, 563
BlsI GCNGC 4 cut(s) 37, 105, 387, 564
Bme1390I CCNGG 2 cut(s) 221, 287
Bme18I GGWCC 3 cut(s) 203, 518, 614
BmeT110I CYCGRG 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 603
BmgT120I GGNCC 4 cut(s) 203, 223, 518, 614
BmiI GGNNCC 4 cut(s) 225, 240, 273, 519
BmrFI CCNGG 2 cut(s) 221, 287
BmrI ACTGGG 1 cut(s) 221
BmsI GCATC 2 cut(s) 461, 738
BmtI GCTAGC 1 cut(s) 35
BmuI ACTGGG 1 cut(s) 221
BpmI CTGGAG 2 cut(s) 303, 719
Bpu14I TTCGAA 1 cut(s) 176
Bsa29I ATCGAT 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 349
BsaJI CCNNGG 3 cut(s) 196, 206, 285
BsaXI ACNNNNNCTCC 2 cut(s) 587, 617
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 248, 515
Bse1I ACTGG 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 2 cut(s) 221, 287
BseCI ATCGAT 1 cut(s) 375
BseDI CCNNGG 3 cut(s) 196, 206, 285
BseGI GGATG 3 cut(s) 10, 436, 646
BseLI CCNNNNNNNGG 3 cut(s) 89, 248, 515
BseMI GCAATG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 2 cut(s) 105, 726
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 3 cut(s) 22, 397, 574
BsgI GTGCAG 1 cut(s) 581
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 4 cut(s) 82, 224, 468, 669
BshNI GGYRCC 2 cut(s) 238, 271
BshVI ATCGAT 1 cut(s) 375
BsiHKCI CYCGRG 1 cut(s) 514
BsiSI CCGG 3 cut(s) 79, 346, 738
BslFI GGGAC 2 cut(s) 557, 775
BslI CCNNNNNNNGG 3 cut(s) 89, 248, 515
BsmAI GTCTC 2 cut(s) 347, 481
BsmFI GGGAC 2 cut(s) 557, 775
BsnI GGCC 4 cut(s) 82, 224, 468, 669
BsoBI CYCGRG 1 cut(s) 514
Bsp119I TTCGAA 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 6 cut(s) 73, 145, 261, 334, 372, 715
Bsp19I CCATGG 1 cut(s) 196
BspACI CCGC 3 cut(s) 103, 201, 269
BspANI GGCC 4 cut(s) 82, 224, 468, 669
BspDI ATCGAT 1 cut(s) 375
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 4 cut(s) 225, 240, 273, 519
BspOI GCTAGC 1 cut(s) 35
BspPI GGATC 1 cut(s) 342
BspT104I TTCGAA 1 cut(s) 176
BspT107I GGYRCC 2 cut(s) 238, 271
BsrDI GCAATG 1 cut(s) 15
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 3 cut(s) 196, 206, 285
BssMI GATC 6 cut(s) 73, 145, 261, 334, 372, 715
BssNAI GTATAC 1 cut(s) 127
BssNI GRCGYC 1 cut(s) 349
BssT1I CCWWGG 2 cut(s) 196, 206
Bst1107I GTATAC 1 cut(s) 127
Bst2UI CCWGG 2 cut(s) 221, 287
Bst4CI ACNGT 7 cut(s) 131, 188, 243, 405, 415, 550, 783
Bst6I CTCTTC 1 cut(s) 161
BstACI GRCGYC 1 cut(s) 349
BstBI TTCGAA 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 33, 110
BstDEI CTNAG 1 cut(s) 365
BstDSI CCRYGG 1 cut(s) 196
BstF5I GGATG 3 cut(s) 10, 436, 646
BstFNI CGCG 1 cut(s) 269
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 3 cut(s) 108, 269, 567
BstKTI GATC 6 cut(s) 76, 148, 264, 337, 375, 718
BstMAI GTCTC 2 cut(s) 347, 481
BstMBI GATC 6 cut(s) 73, 145, 261, 334, 372, 715
BstMWI GCNNNNNNNGC 2 cut(s) 109, 264
BstNI CCWGG 2 cut(s) 221, 287
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 2 cut(s) 219, 285
BstSLI GKGCMC 1 cut(s) 364
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 3 cut(s) 22, 397, 574
BstZ17I GTATAC 1 cut(s) 127
Bsu15I ATCGAT 1 cut(s) 375
BsuI GTATCC 1 cut(s) 200
BsuRI GGCC 4 cut(s) 82, 224, 468, 669
BsuTUI ATCGAT 1 cut(s) 375
BtgI CCRYGG 1 cut(s) 196
BtrI CACGTC 1 cut(s) 603
BtsCI GGATG 3 cut(s) 10, 436, 646
BtsI GCAGTG 1 cut(s) 664
BtsIMutI CAGTG 3 cut(s) 234, 420, 664
Cac8I GCNNGC 2 cut(s) 33, 110
CfoI GCGC 3 cut(s) 108, 269, 567
Cfr13I GGNCC 4 cut(s) 203, 223, 518, 614
ClaI ATCGAT 1 cut(s) 375
CseI GACGC 1 cut(s) 338
CviAII CATG 6 cut(s) 140, 197, 460, 497, 510, 571
DdeI CTNAG 1 cut(s) 365
DpnI GATC 6 cut(s) 75, 147, 263, 336, 374, 717
DpnII GATC 6 cut(s) 73, 145, 261, 334, 372, 715
EaeI YGGCCR 3 cut(s) 80, 466, 667
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 2 cut(s) 196, 206
Eco47I GGWCC 3 cut(s) 203, 518, 614
Eco88I CYCGRG 1 cut(s) 514
EcoO109I RGGNCCY 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 443
EcoRII CCWGG 2 cut(s) 219, 285
EcoT14I CCWWGG 2 cut(s) 196, 206
ErhI CCWWGG 2 cut(s) 196, 206
FaeI CATG 6 cut(s) 143, 200, 463, 500, 513, 574
FaqI GGGAC 2 cut(s) 557, 775
FatI CATG 6 cut(s) 139, 196, 459, 496, 509, 570
FbaI TGATCA 1 cut(s) 145
FblI GTMKAC 3 cut(s) 126, 435, 605
Fnu4HI GCNGC 4 cut(s) 36, 104, 386, 563
FokI GGATG 3 cut(s) 17, 443, 653
Fsp4HI GCNGC 4 cut(s) 36, 104, 386, 563
FspBI CTAG 1 cut(s) 32
GlaI GCGC 3 cut(s) 107, 268, 566
GluI GCNGC 4 cut(s) 36, 104, 386, 563
GsuI CTGGAG 2 cut(s) 303, 719
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 4 cut(s) 82, 224, 468, 669
HapII CCGG 3 cut(s) 79, 346, 738
HgaI GACGC 1 cut(s) 338
HhaI GCGC 3 cut(s) 108, 269, 567
Hin1I GRCGYC 1 cut(s) 349
Hin1II CATG 6 cut(s) 143, 200, 463, 500, 513, 574
Hin6I GCGC 3 cut(s) 106, 267, 565
HinP1I GCGC 3 cut(s) 106, 267, 565
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 2 cut(s) 178, 312
HpaII CCGG 3 cut(s) 79, 346, 738
HphI GGTGA 2 cut(s) 310, 757
Hpy166II GTNNAC 3 cut(s) 127, 436, 606
Hpy188I TCNGA 5 cut(s) 169, 279, 334, 632, 779
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 3 cut(s) 127, 436, 606
Hpy99I CGWCG 1 cut(s) 526
HpyAV CCTTC 2 cut(s) 89, 295
HpyCH4III ACNGT 7 cut(s) 131, 188, 243, 405, 415, 550, 783
HpyCH4IV ACGT 2 cut(s) 116, 602
HpyCH4V TGCA 5 cut(s) 8, 134, 385, 562, 751
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 264
HpyF3I CTNAG 1 cut(s) 365
HpySE526I ACGT 2 cut(s) 116, 602
Hsp92I GRCGYC 1 cut(s) 349
Hsp92II CATG 6 cut(s) 143, 200, 463, 500, 513, 574
HspAI GCGC 3 cut(s) 106, 267, 565
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 6 cut(s) 73, 145, 261, 334, 372, 715
LmnI GCTCC 2 cut(s) 574, 632
Lsp1109I GCAGC 3 cut(s) 22, 397, 574
LweI GCATC 2 cut(s) 461, 738
MaeI CTAG 1 cut(s) 32
MaeII ACGT 2 cut(s) 116, 602
MalI GATC 6 cut(s) 75, 147, 263, 336, 374, 717
MboI GATC 6 cut(s) 73, 145, 261, 334, 372, 715
MboII GAAGA 4 cut(s) 148, 431, 439, 726
MhlI GDGCHC 1 cut(s) 364
MlsI TGGCCA 1 cut(s) 669
MluCI AATT 2 cut(s) 323, 443
MluNI TGGCCA 1 cut(s) 669
MlyI GAGTC 1 cut(s) 306
Mox20I TGGCCA 1 cut(s) 669
MscI TGGCCA 1 cut(s) 669
MseI TTAA 1 cut(s) 380
Msp20I TGGCCA 1 cut(s) 669
MspA1I CMGCKG 1 cut(s) 388
MspI CCGG 3 cut(s) 79, 346, 738
MspR9I CCNGG 2 cut(s) 221, 287
MvaI CCWGG 2 cut(s) 221, 287
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 109, 264
NcoI CCATGG 1 cut(s) 196
NdeII GATC 6 cut(s) 73, 145, 261, 334, 372, 715
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 6 cut(s) 143, 200, 463, 500, 513, 574
NlaIV GGNNCC 4 cut(s) 225, 240, 273, 519
NspI RCATGY 1 cut(s) 463
NspV TTCGAA 1 cut(s) 176
PciI ACATGT 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 4 cut(s) 37, 105, 387, 564
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
PscI ACATGT 1 cut(s) 459
Psp6I CCWGG 2 cut(s) 219, 285
PspGI CCWGG 2 cut(s) 219, 285
PspN4I GGNNCC 4 cut(s) 225, 240, 273, 519
PspPI GGNCC 4 cut(s) 203, 223, 518, 614
PvuII CAGCTG 1 cut(s) 388
SalI GTCGAC 1 cut(s) 434
SaqAI TTAA 1 cut(s) 380
SatI GCNGC 4 cut(s) 36, 104, 386, 563
Sau3AI GATC 6 cut(s) 73, 145, 261, 334, 372, 715
Sau96I GGNCC 4 cut(s) 203, 223, 518, 614
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 2 cut(s) 221, 287
SduI GDGCHC 1 cut(s) 364
SfaNI GCATC 2 cut(s) 461, 738
SfuI TTCGAA 1 cut(s) 176
SinI GGWCC 3 cut(s) 203, 518, 614
Sse9I AATT 2 cut(s) 323, 443
SsiI CCGC 3 cut(s) 103, 201, 269
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 2 cut(s) 219, 285
StyI CCWWGG 2 cut(s) 196, 206
TaaI ACNGT 7 cut(s) 131, 188, 243, 405, 415, 550, 783
TaiI ACGT 2 cut(s) 119, 605
TaqI TCGA 5 cut(s) 50, 176, 181, 375, 435
TasI AATT 2 cut(s) 323, 443
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 380
Tru9I TTAA 1 cut(s) 380
TscAI CASTG 3 cut(s) 234, 420, 664
TseI GCWGC 3 cut(s) 35, 385, 562
TspDTI ATGAA 1 cut(s) 317
TspGWI ACGGA 1 cut(s) 510
TspRI CASTG 3 cut(s) 234, 420, 664
VpaK11BI GGWCC 3 cut(s) 203, 518, 614
XapI RAATTY 2 cut(s) 323, 443
XceI RCATGY 1 cut(s) 463
XmiI GTMKAC 3 cut(s) 126, 435, 605
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.