Rh5BG059800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000336
Physical Location & Seq
Reverse (-)
4919892 .. 4920251
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG059800.1

Sequence Viewer

Length: 360 bp
ATGCAAACTGGGGAATCTCCTAGTCTGGCTAGGTTTGCTGGACCGCCGGTGACACAAGCCCAAGCTCGTAGAGAGATCCGCATTCGATCTATATCGGAGCGTAGTGCTGCGGGCAGTGAGAACTTGGATCCGGATTGTACTGGTGATAGGATAGAGGCTGAAGAAGTGCAGGTGGTGGTGGAACAAAGTGAACCGAATCAGGGACAATTATCGACGTCTGGCAGTAAGGAAAGGGTGCAGCAAGGGGATTTGGAACAGATTGTGGTGGCTGAGAATACTCGGCGCCGGAAGCGGGATGAGGTCGATGGAGTGTCTCCAAAAAAGCCCCGGTTGAGTTTAGCTGTGGGGAGGATCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.04

Weight (kDa)

5.33

Isoelectric Point (pI)

62.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 160
AatII GACGTC 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 160
AccB1I GGYRCC 1 cut(s) 282
AccIII TCCGGA 1 cut(s) 130
AciI CCGC 4 cut(s) 44, 79, 110, 292
AclWI GGATC 4 cut(s) 70, 122, 135, 359
AcuI CTGAAG 1 cut(s) 180
AcyI GRCGYC 2 cut(s) 215, 283
AfaI GTAC 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 200, 292
AluBI AGCT 2 cut(s) 65, 341
AluI AGCT 2 cut(s) 65, 341
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 4 cut(s) 70, 122, 135, 359
Aor13HI TCCGGA 1 cut(s) 130
ApeKI GCWGC 2 cut(s) 107, 238
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 41
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 61, 155
AvaII GGWCC 1 cut(s) 41
BamHI GGATCC 1 cut(s) 127
BanI GGYRCC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 94, 250
BccI CCATC 1 cut(s) 299
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 2 cut(s) 21, 30
BfoI RGCGCY 1 cut(s) 286
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 2 cut(s) 108, 239
BlsI GCNGC 2 cut(s) 109, 240
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 2 cut(s) 129, 284
BmrFI CCNGG 1 cut(s) 328
BmrI ACTGGG 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 328
BsaBI GATNNNNATC 1 cut(s) 91
BsaHI GRCGYC 2 cut(s) 215, 283
BsaJI CCNNGG 1 cut(s) 326
BsaWI WCCGGW 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 292
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 2 cut(s) 13, 145
Bse8I GATNNNNATC 1 cut(s) 91
BseAI TCCGGA 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 1 cut(s) 301
BseJI GATNNNNATC 1 cut(s) 91
BseLI CCNNNNNNNGG 2 cut(s) 200, 292
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 2 cut(s) 13, 145
BseXI GCAGC 2 cut(s) 94, 250
BsgI GTGCAG 2 cut(s) 188, 257
BshNI GGYRCC 1 cut(s) 282
BsiSI CCGG 4 cut(s) 47, 131, 286, 328
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 2 cut(s) 200, 292
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 81
Bsp13I TCCGGA 1 cut(s) 130
Bsp143I GATC 4 cut(s) 75, 86, 127, 351
BspACI CCGC 4 cut(s) 44, 79, 110, 292
BspCNI CTCAG 1 cut(s) 262
BspEI TCCGGA 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 129, 284
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 4 cut(s) 70, 122, 135, 359
BspT107I GGYRCC 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 2 cut(s) 13, 145
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 4 cut(s) 75, 86, 127, 351
BssNI GRCGYC 2 cut(s) 215, 283
BstACI GRCGYC 2 cut(s) 215, 283
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 301
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 4 cut(s) 78, 89, 130, 354
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 4 cut(s) 75, 86, 127, 351
BstMWI GCNNNNNNNGC 2 cut(s) 35, 289
BstSCI CCNGG 1 cut(s) 326
BstV1I GCAGC 2 cut(s) 94, 250
BstX2I RGATCY 2 cut(s) 75, 127
BstYI RGATCY 2 cut(s) 75, 127
BtsCI GGATG 1 cut(s) 301
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 121
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 112
CfoI GCGC 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 138
CviJI RGCY 7 cut(s) 29, 59, 65, 158, 269, 325, 341
CviKI_1 RGCY 7 cut(s) 29, 59, 65, 158, 269, 325, 341
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 1 cut(s) 270
DinI GGCGCC 1 cut(s) 284
DpnI GATC 4 cut(s) 77, 88, 129, 353
DpnII GATC 4 cut(s) 75, 86, 127, 351
Eco47I GGWCC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 180
EgeI GGCGCC 1 cut(s) 284
EheI GGCGCC 1 cut(s) 284
FaiI YATR 1 cut(s) 92
FaqI GGGAC 1 cut(s) 216
FauI CCCGC 2 cut(s) 103, 285
Fnu4HI GCNGC 2 cut(s) 108, 239
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 2 cut(s) 108, 239
FspBI CTAG 2 cut(s) 21, 30
GlaI GCGC 1 cut(s) 284
GluI GCNGC 2 cut(s) 108, 239
HaeII RGCGCY 1 cut(s) 286
HapII CCGG 4 cut(s) 47, 131, 286, 328
HhaI GCGC 1 cut(s) 285
Hin1I GRCGYC 2 cut(s) 215, 283
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HinfI GANTC 2 cut(s) 14, 196
HpaII CCGG 4 cut(s) 47, 131, 286, 328
HphI GGTGA 2 cut(s) 61, 155
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 191
Hpy99I CGWCG 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 3 cut(s) 4, 169, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 289
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 215
Hsp92I GRCGYC 2 cut(s) 215, 283
HspAI GCGC 1 cut(s) 283
KasI GGCGCC 1 cut(s) 282
Kpn2I TCCGGA 1 cut(s) 130
Kzo9I GATC 4 cut(s) 75, 86, 127, 351
LmnI GCTCC 1 cut(s) 97
Lsp1109I GCAGC 2 cut(s) 94, 250
MaeI CTAG 2 cut(s) 21, 30
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 49
MalI GATC 4 cut(s) 77, 88, 129, 353
MboI GATC 4 cut(s) 75, 86, 127, 351
MboII GAAGA 1 cut(s) 173
MflI RGATCY 2 cut(s) 75, 127
MluCI AATT 1 cut(s) 206
Mly113I GGCGCC 1 cut(s) 283
MnlI CCTC 3 cut(s) 148, 292, 342
MroI TCCGGA 1 cut(s) 130
MspI CCGG 4 cut(s) 47, 131, 286, 328
MspR9I CCNGG 1 cut(s) 328
Mva1269I GAATGC 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 35, 289
NarI GGCGCC 1 cut(s) 283
NciI CCSGG 1 cut(s) 328
NdeII GATC 4 cut(s) 75, 86, 127, 351
NlaIV GGNNCC 2 cut(s) 129, 284
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 49
PaqCI CACCTGC 1 cut(s) 160
PctI GAATGC 1 cut(s) 81
PfeI GAWTC 2 cut(s) 14, 196
PkrI GCNGC 2 cut(s) 109, 240
PluTI GGCGCC 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 129, 284
PspPI GGNCC 1 cut(s) 41
PsuI RGATCY 2 cut(s) 75, 127
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SatI GCNGC 2 cut(s) 108, 239
Sau3AI GATC 4 cut(s) 75, 86, 127, 351
Sau96I GGNCC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 328
SetI ASST 6 cut(s) 35, 67, 174, 218, 303, 343
SfoI GGCGCC 1 cut(s) 284
SgrAI CRCCGGYG 1 cut(s) 46
SinI GGWCC 1 cut(s) 41
Sse9I AATT 1 cut(s) 206
SsiI CCGC 4 cut(s) 44, 79, 110, 292
SspDI GGCGCC 1 cut(s) 282
SspMI CTAG 2 cut(s) 21, 30
StyD4I CCNGG 1 cut(s) 326
TaiI ACGT 1 cut(s) 218
TaqI TCGA 4 cut(s) 85, 212, 303, 354
TasI AATT 1 cut(s) 206
TatI WGTACW 1 cut(s) 137
TfiI GAWTC 2 cut(s) 14, 196
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 2 cut(s) 107, 238
Tsp45I GTSAC 1 cut(s) 49
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 41
XspI CTAG 2 cut(s) 21, 30
ZraI GACGTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.