Rmu_sc0014745.1_g000005

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014745.1
OG0000336
Physical Location & Seq
Forward (+)
15652 .. 16262
611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014745.1_g000005.1.cds

Sequence Viewer

Length: 468 bp
atggaggctgtggatgaaatgacagttcgcttggctgcatcattgggattggcggatgctcggaaaccggtggatctccgtccactgagaggaggagggctacgtcgttcgcagatgtatttggtcgaaaaacttttgaccgctcgggctttcaataaaaggtctttcatggtgttggctccgtttgatagagtaggagccatcaaggatgttcctcagtctcgtctagctttttggatcaaagttcgtggccttctggtggactttcattctgataggtgtcttcggcggatcgaaagtgcattggggagatttttgcaaaaggactcggtggagttggaggctggaaggttccggattagggtggagatggatctgatacaacctgtggttttccggcatagttttaaggtggttgatggcagtgttgttgacttggattttttctttgagaacccctatggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

155

Amino Acids

17.74

Weight (kDa)

9.9

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 143
AccIII TCCGGA 1 cut(s) 354
AciI CCGC 3 cut(s) 53, 141, 289
AclWI GGATC 4 cut(s) 81, 245, 299, 381
AfiI CCNNNNNNNGG 3 cut(s) 89, 259, 361
AgeI ACCGGT 1 cut(s) 67
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 4 cut(s) 81, 245, 299, 381
Ama87I CYCGRG 1 cut(s) 144
Aor13HI TCCGGA 1 cut(s) 354
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 35
AsiGI ACCGGT 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 22
BccI CCATC 3 cut(s) 209, 364, 413
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 227
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 144
BmiI GGNNCC 3 cut(s) 180, 199, 353
BmsI GCATC 2 cut(s) 46, 47
BpiI GAAGAC 1 cut(s) 275
BsaWI WCCGGW 2 cut(s) 67, 354
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 259, 361
Bse118I RCCGGY 1 cut(s) 67
BseAI TCCGGA 1 cut(s) 354
BseGI GGATG 3 cut(s) 19, 61, 214
BseLI CCNNNNNNNGG 3 cut(s) 89, 259, 361
BseMII CTCAG 2 cut(s) 77, 230
BseRI GAGGAG 2 cut(s) 105, 108
BseXI GCAGC 1 cut(s) 22
BshFI GGCC 1 cut(s) 252
BshTI ACCGGT 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 3 cut(s) 68, 355, 397
BslI CCNNNNNNNGG 3 cut(s) 89, 259, 361
BsmAI GTCTC 1 cut(s) 225
BsnI GGCC 1 cut(s) 252
BsoBI CYCGRG 1 cut(s) 144
Bsp13I TCCGGA 1 cut(s) 354
Bsp143I GATC 4 cut(s) 73, 237, 291, 373
BspACI CCGC 3 cut(s) 53, 141, 289
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 2 cut(s) 78, 229
BspEI TCCGGA 1 cut(s) 354
BspLI GGNNCC 3 cut(s) 180, 199, 353
BspPI GGATC 4 cut(s) 81, 245, 299, 381
BsrBI CCGCTC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 67
BssAI RCCGGY 1 cut(s) 67
BssMI GATC 4 cut(s) 73, 237, 291, 373
Bst4CI ACNGT 1 cut(s) 25
BstDEI CTNAG 2 cut(s) 86, 216
BstF5I GGATG 3 cut(s) 19, 61, 214
BstKTI GATC 4 cut(s) 76, 240, 294, 376
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 4 cut(s) 73, 237, 291, 373
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 2 cut(s) 73, 373
BstYI RGATCY 2 cut(s) 73, 373
BsuRI GGCC 1 cut(s) 252
BtsCI GGATG 3 cut(s) 19, 61, 214
BtsI GCAGTG 1 cut(s) 430
BtsIMutI CAGTG 2 cut(s) 83, 430
Cfr10I RCCGGY 1 cut(s) 67
CspAI ACCGGT 1 cut(s) 67
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 1 cut(s) 169
CviJI RGCY 9 cut(s) 8, 35, 100, 149, 179, 200, 230, 252, 344
CviKI_1 RGCY 9 cut(s) 8, 35, 100, 149, 179, 200, 230, 252, 344
DdeI CTNAG 2 cut(s) 86, 216
DpnI GATC 4 cut(s) 75, 239, 293, 375
DpnII GATC 4 cut(s) 73, 237, 291, 373
EciI GGCGGA 2 cut(s) 68, 304
Eco88I CYCGRG 1 cut(s) 144
FaeI CATG 1 cut(s) 172
FaiI YATR 3 cut(s) 170, 402, 462
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 3 cut(s) 26, 68, 221
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 227
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 252
HapII CCGG 3 cut(s) 68, 355, 397
Hin1II CATG 1 cut(s) 172
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 1 cut(s) 326
HpaII CCGG 3 cut(s) 68, 355, 397
Hpy166II GTNNAC 3 cut(s) 83, 262, 433
Hpy188I TCNGA 3 cut(s) 63, 274, 378
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 3 cut(s) 83, 262, 433
Hpy99I CGWCG 1 cut(s) 108
HpyAV CCTTC 2 cut(s) 263, 342
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 3 cut(s) 38, 302, 319
HpyF3I CTNAG 2 cut(s) 86, 216
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 1 cut(s) 172
Kpn2I TCCGGA 1 cut(s) 354
Kzo9I GATC 4 cut(s) 73, 237, 291, 373
LmnI GCTCC 2 cut(s) 184, 197
LpnPI CCDG 6 cut(s) 81, 242, 330, 368, 399, 410
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 46, 47
MaeI CTAG 1 cut(s) 227
MaeII ACGT 1 cut(s) 103
MalI GATC 4 cut(s) 75, 239, 293, 375
MbiI CCGCTC 1 cut(s) 143
MboI GATC 4 cut(s) 73, 237, 291, 373
MboII GAAGA 1 cut(s) 275
MflI RGATCY 2 cut(s) 73, 373
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 5 cut(s) 83, 86, 89, 225, 334
MroI TCCGGA 1 cut(s) 354
MseI TTAA 1 cut(s) 408
MspI CCGG 3 cut(s) 68, 355, 397
NdeII GATC 4 cut(s) 73, 237, 291, 373
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 3 cut(s) 180, 199, 353
PinAI ACCGGT 1 cut(s) 67
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PspN4I GGNNCC 3 cut(s) 180, 199, 353
PsuI RGATCY 2 cut(s) 73, 373
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 4 cut(s) 73, 237, 291, 373
SchI GAGTC 1 cut(s) 320
SetI ASST 7 cut(s) 106, 164, 232, 281, 353, 388, 414
SfaNI GCATC 2 cut(s) 46, 47
SsiI CCGC 3 cut(s) 53, 141, 289
SspMI CTAG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 1 cut(s) 106
TaqI TCGA 2 cut(s) 126, 294
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 2 cut(s) 90, 430
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 3 cut(s) 30, 157, 257
TspGWI ACGGA 2 cut(s) 68, 171
TspRI CASTG 2 cut(s) 90, 430
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.