Rh2AG372900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000336
Physical Location & Seq
Reverse (-)
55449919 .. 55466742
16824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG372900.1

Sequence Viewer

Length: 576 bp
ATGGAAAGGCCCCGGATGGATCATATAGTGTCTTGTTTTAAGGGGACCCACCTAAGAAGGAAACCGACCTCAGAACACTCAGGTGTAATCGCAAGAACTTCAGAGAAGAACCCTGCATGTCATCAGGATTCAGTTGGCAGTGCTGCAGAAGTTTCGGGTCAGAACTTTGTGGATGAGGACAACAGAGGGAAGCTAAACTGTGAATTCATACTAAAAAGGCTTAAAAGGGCTTCACCCAACTCTTCCAGCAATGATCAACTTGTGCCATTGGGAAATTTTGATACAAAGGAGGTCCGAGCTTGTAAAGAGATCCACATCTGGTCTGTGTCGGAGCGTAGTGCTGCTGGTAGTGAGAACTCGGGCTCAGACCGTGCTAGTGCTGGGATAGAGGCTGGAGAAGTGCAAGTGGTGACTGAGCAAAGCGAACCGGATCAGGGACAGTCATCGAATTCTGGCAGTAAGAAGATTGTGCAGCAAGTGGAGTCGGAGCAGAACCAACCAGAGGACCTCGTCGGCCGGCCAAACCCTCAGTTTCCGGAGCTACCCATCTTCTCATCGGATCCTATTGGTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.81

Weight (kDa)

5.43

Isoelectric Point (pI)

59.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 535
AclWI GGATC 5 cut(s) 27, 304, 438, 554, 567
AcoI YGGCCR 2 cut(s) 514, 518
AcsI RAATTY 3 cut(s) 203, 274, 448
AcuI CTGAAG 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 434, 502
AleI CACNNNNGTG 1 cut(s) 81
AluBI AGCT 3 cut(s) 193, 299, 541
AluI AGCT 3 cut(s) 193, 299, 541
AlwI GGATC 5 cut(s) 27, 304, 438, 554, 567
Ama87I CYCGRG 1 cut(s) 358
Aor13HI TCCGGA 1 cut(s) 535
AoxI GGCC 3 cut(s) 8, 514, 518
ApeKI GCWGC 3 cut(s) 143, 341, 472
ApoI RAATTY 3 cut(s) 203, 274, 448
AspS9I GGNCC 4 cut(s) 9, 45, 292, 505
AsuC2I CCSGG 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 225, 421
AvaI CYCGRG 1 cut(s) 358
AvaII GGWCC 3 cut(s) 45, 292, 505
BamHI GGATCC 1 cut(s) 559
BanII GRGCYC 1 cut(s) 365
BbvI GCAGC 3 cut(s) 130, 328, 484
BccI CCATC 2 cut(s) 10, 554
BcgI CGANNNNNNTGC 2 cut(s) 135, 169
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 13
BfaI CTAG 1 cut(s) 375
BfmI CTRYAG 1 cut(s) 144
BisI GCNGC 3 cut(s) 144, 342, 473
BlsI GCNGC 3 cut(s) 145, 343, 474
Bme1390I CCNGG 1 cut(s) 13
Bme18I GGWCC 3 cut(s) 45, 292, 505
BmeT110I CYCGRG 1 cut(s) 358
BmgT120I GGNCC 4 cut(s) 9, 45, 292, 505
BmiI GGNNCC 4 cut(s) 11, 46, 47, 561
BmrFI CCNGG 1 cut(s) 13
BpmI CTGGAG 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 13
BsaBI GATNNNNATC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 11
BsaWI WCCGGW 2 cut(s) 427, 535
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 502
Bse118I RCCGGY 1 cut(s) 516
Bse3DI GCAATG 1 cut(s) 256
Bse8I GATNNNNATC 1 cut(s) 314
BseAI TCCGGA 1 cut(s) 535
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 2 cut(s) 21, 178
BseJI GATNNNNATC 1 cut(s) 314
BseLI CCNNNNNNNGG 2 cut(s) 434, 502
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 5 cut(s) 84, 93, 378, 405, 542
BseX3I CGGCCG 1 cut(s) 514
BseXI GCAGC 3 cut(s) 130, 328, 484
BseYI CCCAGC 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 491
Bsh1285I CGRYCG 1 cut(s) 517
BshFI GGCC 3 cut(s) 10, 516, 520
BsiEI CGRYCG 1 cut(s) 517
BsiHKCI CYCGRG 1 cut(s) 358
BsiSI CCGG 4 cut(s) 13, 428, 517, 536
BslFI GGGAC 2 cut(s) 58, 450
BslI CCNNNNNNNGG 2 cut(s) 434, 502
BsmFI GGGAC 2 cut(s) 58, 450
BsnI GGCC 3 cut(s) 10, 516, 520
BsoBI CYCGRG 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 365
Bsp13I TCCGGA 1 cut(s) 535
Bsp143I GATC 5 cut(s) 19, 253, 309, 430, 559
BspANI GGCC 3 cut(s) 10, 516, 520
BspCNI CTCAG 5 cut(s) 83, 92, 377, 406, 541
BspEI TCCGGA 1 cut(s) 535
BspLI GGNNCC 4 cut(s) 11, 46, 47, 561
BspMAI CTGCAG 1 cut(s) 148
BspPI GGATC 5 cut(s) 27, 304, 438, 554, 567
BsrDI GCAATG 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 516
BssAI RCCGGY 1 cut(s) 516
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 5 cut(s) 19, 253, 309, 430, 559
Bst4CI ACNGT 3 cut(s) 200, 371, 441
Bst6I CTCTTC 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 518
BstDEI CTNAG 6 cut(s) 53, 70, 79, 364, 414, 528
BstF5I GGATG 2 cut(s) 21, 178
BstKTI GATC 5 cut(s) 22, 256, 312, 433, 562
BstMBI GATC 5 cut(s) 19, 253, 309, 430, 559
BstMCI CGRYCG 1 cut(s) 517
BstNSI RCATGY 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 130, 328, 484
BstX2I RGATCY 2 cut(s) 309, 559
BstYI RGATCY 2 cut(s) 309, 559
BstZI CGGCCG 1 cut(s) 514
BsuRI GGCC 3 cut(s) 10, 516, 520
BtsCI GGATG 2 cut(s) 21, 178
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 518
Cfr10I RCCGGY 1 cut(s) 516
Cfr13I GGNCC 4 cut(s) 9, 45, 292, 505
CviAII CATG 1 cut(s) 117
DdeI CTNAG 6 cut(s) 53, 70, 79, 364, 414, 528
DpnI GATC 5 cut(s) 21, 255, 311, 432, 561
DpnII GATC 5 cut(s) 19, 253, 309, 430, 559
EaeI YGGCCR 2 cut(s) 514, 518
EagI CGGCCG 1 cut(s) 514
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
EclXI CGGCCG 1 cut(s) 514
Eco24I GRGCYC 1 cut(s) 365
Eco47I GGWCC 3 cut(s) 45, 292, 505
Eco52I CGGCCG 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 358
EcoO109I RGGNCCY 3 cut(s) 9, 45, 505
EcoRI GAATTC 2 cut(s) 203, 448
EcoT38I GRGCYC 1 cut(s) 365
FaeI CATG 1 cut(s) 120
FaiI YATR 4 cut(s) 24, 26, 118, 209
FaqI GGGAC 2 cut(s) 58, 450
FatI CATG 1 cut(s) 116
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 3 cut(s) 144, 342, 473
FokI GGATG 2 cut(s) 28, 185
FriOI GRGCYC 1 cut(s) 365
FseI GGCCGGCC 1 cut(s) 520
Fsp4HI GCNGC 3 cut(s) 144, 342, 473
FspBI CTAG 1 cut(s) 375
GluI GCNGC 3 cut(s) 144, 342, 473
GsaI CCCAGC 1 cut(s) 384
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 3 cut(s) 10, 516, 520
HapII CCGG 4 cut(s) 13, 428, 517, 536
Hin1II CATG 1 cut(s) 120
HinfI GANTC 2 cut(s) 128, 482
HpaII CCGG 4 cut(s) 13, 428, 517, 536
HphI GGTGA 2 cut(s) 225, 421
Hpy188I TCNGA 9 cut(s) 73, 103, 162, 296, 331, 367, 487, 559, 575
Hpy188III TCNNGA 2 cut(s) 125, 536
Hpy99I CGWCG 1 cut(s) 515
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 3 cut(s) 200, 371, 441
HpyCH4V TGCA 4 cut(s) 116, 146, 403, 472
HpyF3I CTNAG 6 cut(s) 53, 70, 79, 364, 414, 528
Hsp92II CATG 1 cut(s) 120
KflI GGGWCCC 1 cut(s) 45
Kpn2I TCCGGA 1 cut(s) 535
KroI GCCGGC 1 cut(s) 516
KroNI GCCGGC 1 cut(s) 518
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 5 cut(s) 19, 253, 309, 430, 559
LmnI GCTCC 3 cut(s) 331, 487, 538
Lsp1109I GCAGC 3 cut(s) 130, 328, 484
MaeI CTAG 1 cut(s) 375
MaeIII GTNAC 1 cut(s) 409
MalI GATC 5 cut(s) 21, 255, 311, 432, 561
MboI GATC 5 cut(s) 19, 253, 309, 430, 559
MboII GAAGA 4 cut(s) 118, 234, 475, 541
MflI RGATCY 2 cut(s) 309, 559
MhlI GDGCHC 1 cut(s) 365
MluCI AATT 3 cut(s) 203, 274, 448
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 2 cut(s) 309, 465
MnlI CCTC 8 cut(s) 79, 169, 179, 283, 382, 496, 518, 537
MroI TCCGGA 1 cut(s) 535
MroNI GCCGGC 1 cut(s) 516
MseI TTAA 2 cut(s) 39, 222
MslI CAYNNNNRTG 1 cut(s) 81
MspI CCGG 4 cut(s) 13, 428, 517, 536
MspR9I CCNGG 1 cut(s) 13
NaeI GCCGGC 1 cut(s) 518
NciI CCSGG 1 cut(s) 13
NdeII GATC 5 cut(s) 19, 253, 309, 430, 559
NgoMIV GCCGGC 1 cut(s) 516
NlaIII CATG 1 cut(s) 120
NlaIV GGNNCC 4 cut(s) 11, 46, 47, 561
NmuCI GTSAC 1 cut(s) 409
NspI RCATGY 1 cut(s) 120
OliI CACNNNNGTG 1 cut(s) 81
PdiI GCCGGC 1 cut(s) 518
PfeI GAWTC 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 509
PkrI GCNGC 3 cut(s) 145, 343, 474
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
PpuMI RGGWCCY 2 cut(s) 45, 505
Psp5II RGGWCCY 2 cut(s) 45, 505
PspFI CCCAGC 1 cut(s) 380
PspN4I GGNNCC 4 cut(s) 11, 46, 47, 561
PspPI GGNCC 4 cut(s) 9, 45, 292, 505
PspPPI RGGWCCY 2 cut(s) 45, 505
PstI CTGCAG 1 cut(s) 148
PsuI RGATCY 2 cut(s) 309, 559
PsyI GACNNNGTC 1 cut(s) 509
RigI GGCCGGCC 1 cut(s) 520
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 2 cut(s) 39, 222
SatI GCNGC 3 cut(s) 144, 342, 473
Sau3AI GATC 5 cut(s) 19, 253, 309, 430, 559
Sau96I GGNCC 4 cut(s) 9, 45, 292, 505
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 1 cut(s) 365
SetI ASST 8 cut(s) 54, 71, 85, 195, 294, 301, 510, 543
SfcI CTRYAG 1 cut(s) 144
SinI GGWCC 3 cut(s) 45, 292, 505
SmiMI CAYNNNNRTG 1 cut(s) 81
Sse9I AATT 3 cut(s) 203, 274, 448
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 1 cut(s) 11
TaaI ACNGT 3 cut(s) 200, 371, 441
TaqI TCGA 1 cut(s) 446
TasI AATT 3 cut(s) 203, 274, 448
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 2 cut(s) 39, 222
Tru9I TTAA 2 cut(s) 39, 222
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 3 cut(s) 143, 341, 472
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 1 cut(s) 196
TspRI CASTG 1 cut(s) 145
Tth111I GACNNNGTC 1 cut(s) 509
VpaK11BI GGWCC 3 cut(s) 45, 292, 505
XapI RAATTY 3 cut(s) 203, 274, 448
XceI RCATGY 1 cut(s) 120
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.