Rh1AG292500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000336
Physical Location & Seq
Forward (+)
52242004 .. 52242351
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG292500.1

Sequence Viewer

Length: 348 bp
ATGGCGATGTTTGATGGTCTTCCAGTGGCATTGCTGAGGACACACAAGACTATTACTATCCAGAAGTTTGATTCTCATGTTGCTCTGGTAGTGGCTGTTAGTGGAATGATGAGGAAGAGAGATGGGGGTGATAATTTGTCGCCCAAGAAACCAAGGCTAAGCCTAGTAGTGGGTAGGACTAATTTGGATGCTAAGTCTATAGGACTGGCTTTGGTGACTATTGCACAAGAGGCTTCTAAGAAAAAGAGGCGGCCTAGAGGAGCGAAGAACAAGAAGTCTATTGAGGTTGAGGCCAAGAAGACATTTCCCATGAAACACTCAAAAAGTTTCCATGAAAAGAAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.72

Weight (kDa)

10.8

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 250
AfiI CCNNNNNNNGG 1 cut(s) 169
AluBI AGCT 1 cut(s) 345
AluI AGCT 1 cut(s) 345
AoxI GGCC 2 cut(s) 251, 291
AsuHPI GGTGA 2 cut(s) 140, 226
BbsI GAAGAC 2 cut(s) 11, 305
BbvCI CCTCAGC 1 cut(s) 35
BccI CCATC 2 cut(s) 8, 116
BfaI CTAG 3 cut(s) 164, 255, 346
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 1 cut(s) 251
BlpI GCTNAGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 252
BmsI GCATC 1 cut(s) 178
BpiI GAAGAC 2 cut(s) 11, 305
Bpu10I CCTNAGC 1 cut(s) 35
Bpu1102I GCTNAGC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 2 cut(s) 23, 210
Bse3DI GCAATG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 152
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 23, 210
BseRI GAGGAG 1 cut(s) 273
BshFI GGCC 2 cut(s) 253, 293
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 2 cut(s) 253, 293
Bsp1720I GCTNAGC 1 cut(s) 158
BspACI CCGC 1 cut(s) 250
BspANI GGCC 2 cut(s) 253, 293
BspCNI CTCAG 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 29
BsrI ACTGG 2 cut(s) 23, 210
BssECI CCNNGG 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 110
BstDEI CTNAG 4 cut(s) 35, 158, 192, 237
BstF5I GGATG 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstSFI CTRYAG 1 cut(s) 198
BstV2I GAAGAC 2 cut(s) 11, 305
BsuRI GGCC 2 cut(s) 253, 293
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 30
CviAII CATG 3 cut(s) 77, 310, 332
CviJI RGCY 8 cut(s) 95, 157, 162, 209, 233, 253, 293, 345
CviKI_1 RGCY 8 cut(s) 95, 157, 162, 209, 233, 253, 293, 345
DdeI CTNAG 4 cut(s) 35, 158, 192, 237
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 3 cut(s) 80, 313, 335
FaiI YATR 4 cut(s) 78, 200, 311, 333
FatI CATG 3 cut(s) 76, 309, 331
Fnu4HI GCNGC 1 cut(s) 251
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 251
FspBI CTAG 3 cut(s) 164, 255, 346
GluI GCNGC 1 cut(s) 251
HaeIII GGCC 2 cut(s) 253, 293
Hin1II CATG 3 cut(s) 80, 313, 335
HinfI GANTC 1 cut(s) 71
HphI GGTGA 2 cut(s) 140, 226
Hpy188III TCNNGA 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 4 cut(s) 35, 158, 192, 237
Hsp92II CATG 3 cut(s) 80, 313, 335
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 4 cut(s) 36, 71, 74, 191
LweI GCATC 1 cut(s) 178
MaeI CTAG 3 cut(s) 164, 255, 346
MaeIII GTNAC 1 cut(s) 214
MboII GAAGA 4 cut(s) 11, 127, 277, 310
MluCI AATT 2 cut(s) 133, 181
MnlI CCTC 7 cut(s) 30, 105, 223, 240, 251, 277, 283
MwoI GCNNNNNNNGC 1 cut(s) 230
NlaIII CATG 3 cut(s) 80, 313, 335
NmuCI GTSAC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 252
SatI GCNGC 1 cut(s) 251
SetI ASST 2 cut(s) 288, 347
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 198
Sse9I AATT 2 cut(s) 133, 181
SsiI CCGC 1 cut(s) 250
SspMI CTAG 3 cut(s) 164, 255, 346
StyI CCWWGG 1 cut(s) 152
TasI AATT 2 cut(s) 133, 181
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 1 cut(s) 71
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 326, 348
TspRI CASTG 1 cut(s) 30
XspI CTAG 3 cut(s) 164, 255, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.