Rorug03G0169800

S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000336
Physical Location & Seq
Reverse (-)
14355936 .. 14362315
6380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0169800.1

Sequence Viewer

Length: 1902 bp
ATGGCAGACCCTCACCCTCACTATGTGCATCTTGACGATGTAGATCTACAGGAAGAGGATGAAGAAGCCTCAGAAGAACCATCCGTCATCGGCGACGTTGAAGACTCAGAACAAGAAGACGAAGAAGAACCAGTGTCCCAAACGGATCCCAATTATGCTCTCTATCTTTCCAGAATGGGACCCACTCATGAGGCCGAAGAAGCCGACTCGGATTATGAACGGCATCTGGTCAGAACCGCTTGCTTTCTGAGCGGCGGCGGCGGCGGCGGTGACGGCAAGCGGAGAAGAATCGGAAGCCAGGAAACGGCGGCGTTTGACACCGGAGAGAGCTCTCAGAGCAGTCAGTGGAATCCGAATGAAATTGATGGCTTGTTTTGCCCAATTTGCTTGGAGGCTTGGACTAATGATGGTGATCACTACATCTGCTGTCTTCCTTGTGGACACATTTTCGGTATGTCCTGCATTGAAAAATGGCTAGGCCAGAGTAAAAGACAGGGAAAGTGTCCTCAATGCAATGCCAAATGCAAGTTGAATGATGTCAGGAAACTTTTCACGTCACGAGTTATTTCTGTTGATGAAGAATCACAAAAGAGGATTCGTTCACTTGAGGCTAAATGTGCTTCTTTTGAGAAGGAGCGAGCAGAATGGCATAAGAGGGAAGCAGAATTGCTAAACGGACAGTGTGTACTAGAACTCAAAATTCAACAACTTATGGAGAGCAAAGCATCAGGATCAATCAATGCTACTGGGGCCTTTGAAAGAAGATTCGTATCTGGTAATAACATCTTAGAGGGAAGGTCTTATGGGCTAACATTTGGCTCTAATACCTGTGGACAAGCATCTCCTTGCAGCTTCAAATTAGAGAAGGAGTTGCATGTAGCTGGTGCTCATTTGTTTGATGTTGATGCGTCTAACCAAATTTTGTTAATTTCGCGAAGGCATGCTGGGATAGGTGGAAAAGATGTGCTTACCAAAATGAGCCTGATACCTCCATATGACAGAGATGATATTCTTCTTCCTAGCTCTTTAAATTCTATCAGGGACCTACGTCTTTCTCCTTCTAACACTAACCTTGCACTCTTTGCTTGCCTAGGGAAGAAATTGGCAGTTCTCAGTACGGAGAACAACAACGTCATTGTTTCCTATGACCTACCGGCTGCTGCTTGGACATGCTCATGGGATCTCAACGATTCAAATTATATATATGCTGGATTACAGAATGGTTATCTTCTGGTGTTTGACATGCGCCAAACCTCAGGGCCTGTTGAATCCCTGAAGGGGCTGACAAGCAACCCAATTCATACCGTGCATTCCCTTTCATATAATTCAGCTCTTCCCACTGGTGTTAGAACAGTGATATCCGCATCGTCAATTGGCTTATGTCTCTGGAATTTTGGTGGTGGTGCTGCAAAGGGGCCAATTTTGGTCCCTGAAACAGAGAACCAAGGAGTTTGTATATCTCTTGCATATTGCCCTAGAACAGATGACATTGTTGCTTCCTATCGCCCCAAAGTCGAGTTTTCTGATGAGGCAGTTCTTACACAACCAACTCCTTCACGTGCCATCGGACAAGGAACAGTCGGTTCCCATGTTCTTTTAAAGAGAGCAGGCAGCAGCAGTCATTTTCGGAAGTTGGGATCTTCATCTGGCAACGTGTGTGATATCGGACTGCCAAAATCTGCAATTATCAACATAGAAAATTGTGGCAGTTTGTTTGCATCTGAAGATAAACTATCTTCTGAACTAGTTTTAGAAGAGCTGTCGTCTTTTACTACTGTTCAGCGCCTTAACTTACAGCGATGTCCTGTTCAGGATGTGAAGTACACATCTTTCTTAAGGAAAGGTCTCCTCAGTTGTTTGAATGGTAACACGCTGCAACTCTTCAGTACCAAGCTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLR1-BP

Protein Analysis

633

Amino Acids

69.16

Weight (kDa)

5.25

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 126 - 172 1.4e-09 Ring finger domain
zf-RING_UBOX PF13445 126 - 169 4.5e-06 RING-type zinc-finger
WD40_RFWD3 PF23419 344 - 628 9.5e-31 E3 ubiquitin-protein ligase RFWD3 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 252
AccII CGCG 1 cut(s) 934
AclWI GGATC 5 cut(s) 140, 153, 739, 1188, 1645
AcsI RAATTY 4 cut(s) 699, 918, 1030, 1390
AcuI CTGAAG 3 cut(s) 1295, 1743, 1867
AcvI CACGTG 1 cut(s) 1559
AdeI CACNNNGTG 1 cut(s) 25
AfaI GTAC 4 cut(s) 687, 1117, 1823, 1888
AfiI CCNNNNNNNGG 2 cut(s) 304, 1278
AflII CTTAAG 1 cut(s) 1834
AflIII ACRYGT 1 cut(s) 1653
AgsI TTSAA 9 cut(s) 101, 467, 532, 704, 758, 856, 1194, 1268, 1861
AhlI ACTAGT 1 cut(s) 1744
AjiI CACGTC 1 cut(s) 555
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 7 cut(s) 330, 852, 881, 1023, 1331, 1759, 1894
AluI AGCT 7 cut(s) 330, 852, 881, 1023, 1331, 1759, 1894
Alw21I GWGCWC 2 cut(s) 332, 889
Alw26I GTCTC 2 cut(s) 1388, 1850
AlwI GGATC 5 cut(s) 140, 153, 739, 1188, 1645
AlwNI CAGNNNCTG 1 cut(s) 1262
AoxI GGCC 5 cut(s) 192, 478, 750, 1259, 1415
ApeKI GCWGC 7 cut(s) 849, 1157, 1160, 1406, 1611, 1614, 1873
ApoI RAATTY 4 cut(s) 699, 918, 1030, 1390
Asp700I GAANNNNTTC 1 cut(s) 548
AspA2I CCTAGG 1 cut(s) 1090
AspLEI GCGC 2 cut(s) 1248, 1785
AspS9I GGNCC 6 cut(s) 179, 750, 1042, 1259, 1415, 1426
AsuHPI GGTGA 3 cut(s) 5, 281, 422
AvaII GGWCC 3 cut(s) 179, 1042, 1426
AvrII CCTAGG 1 cut(s) 1090
AxyI CCTNAGG 1 cut(s) 1255
BamHI GGATCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 332
BauI CACGAG 1 cut(s) 558
BbrPI CACGTG 1 cut(s) 1559
BbsI GAAGAC 3 cut(s) 108, 123, 422
Bbv12I GWGCWC 2 cut(s) 332, 889
BbvI GCAGC 7 cut(s) 861, 1144, 1147, 1393, 1623, 1626, 1860
BccI CCATC 4 cut(s) 88, 359, 401, 1571
BceAI ACGGC 3 cut(s) 236, 289, 321
BciT130I CCWGG 1 cut(s) 299
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 2 cut(s) 1388, 1850
BcuI ACTAGT 1 cut(s) 1744
BfaI CTAG 6 cut(s) 476, 689, 1020, 1091, 1476, 1745
BfmI CTRYAG 1 cut(s) 47
BfoI RGCGCY 1 cut(s) 1786
BfrI CTTAAG 1 cut(s) 1834
BglII AGATCT 1 cut(s) 43
BlnI CCTAGG 1 cut(s) 1090
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 3 cut(s) 179, 1042, 1426
BmgBI CACGTC 1 cut(s) 555
BmgT120I GGNCC 6 cut(s) 179, 750, 1042, 1259, 1415, 1426
BmiI GGNNCC 8 cut(s) 147, 180, 181, 751, 1043, 1416, 1428, 1585
BmrFI CCNGG 1 cut(s) 299
BmrI ACTGGG 1 cut(s) 756
BmsI GCATC 7 cut(s) 37, 232, 734, 848, 895, 1373, 1727
BmuI ACTGGG 1 cut(s) 756
BoxI GACNNNNGTC 1 cut(s) 1047
BpiI GAAGAC 3 cut(s) 108, 123, 422
BpuEI CTTGAG 1 cut(s) 626
BsaAI YACGTR 1 cut(s) 1559
BsaBI GATNNNNATC 4 cut(s) 42, 411, 769, 1642
BsaI GGTCTC 1 cut(s) 1850
BsaJI CCNNGG 2 cut(s) 1090, 1444
BsaWI WCCGGW 1 cut(s) 320
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 1278
Bse118I RCCGGY 1 cut(s) 1153
Bse1I ACTGG 3 cut(s) 131, 751, 1345
Bse21I CCTNAGG 1 cut(s) 1255
Bse3DI GCAATG 1 cut(s) 520
Bse8I GATNNNNATC 4 cut(s) 42, 411, 769, 1642
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 1090, 1444
BseGI GGATG 3 cut(s) 64, 80, 1819
BseJI GATNNNNATC 4 cut(s) 42, 411, 769, 1642
BseLI CCNNNNNNNGG 2 cut(s) 304, 1278
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 7 cut(s) 84, 120, 239, 347, 1126, 1269, 1864
BseNI ACTGG 3 cut(s) 131, 751, 1345
BseRI GAGGAG 1 cut(s) 1838
BseXI GCAGC 7 cut(s) 861, 1144, 1147, 1393, 1623, 1626, 1860
BseYI CCCAGC 1 cut(s) 944
Bsh1236I CGCG 1 cut(s) 934
BshFI GGCC 5 cut(s) 194, 480, 752, 1261, 1417
BsiHKAI GWGCWC 2 cut(s) 332, 889
BsiSI CCGG 2 cut(s) 321, 1154
BslFI GGGAC 4 cut(s) 121, 192, 1055, 1412
BslI CCNNNNNNNGG 2 cut(s) 304, 1278
BsmAI GTCTC 2 cut(s) 1388, 1850
BsmFI GGGAC 4 cut(s) 121, 192, 1055, 1412
BsmI GAATGC 1 cut(s) 1309
BsnI GGCC 5 cut(s) 194, 480, 752, 1261, 1417
Bso31I GGTCTC 1 cut(s) 1850
Bsp1286I GDGCHC 2 cut(s) 332, 889
Bsp143I GATC 6 cut(s) 43, 145, 412, 731, 1180, 1637
Bsp68I TCGCGA 1 cut(s) 934
BspANI GGCC 5 cut(s) 194, 480, 752, 1261, 1417
BspCNI CTCAG 7 cut(s) 83, 119, 240, 346, 1125, 1268, 1863
BspFNI CGCG 1 cut(s) 934
BspHI TCATGA 2 cut(s) 187, 1898
BspLI GGNNCC 8 cut(s) 147, 180, 181, 751, 1043, 1416, 1428, 1585
BspPI GGATC 5 cut(s) 140, 153, 739, 1188, 1645
BspQI GCTCTTC 2 cut(s) 1338, 1749
BspTI CTTAAG 1 cut(s) 1834
BspTNI GGTCTC 1 cut(s) 1850
BsrBI CCGCTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 520
BsrFI RCCGGY 1 cut(s) 1153
BsrI ACTGG 3 cut(s) 131, 751, 1345
BssAI RCCGGY 1 cut(s) 1153
BssECI CCNNGG 2 cut(s) 1090, 1444
BssMI GATC 6 cut(s) 43, 145, 412, 731, 1180, 1637
BssSI CACGAG 1 cut(s) 558
BssT1I CCWWGG 2 cut(s) 1090, 1444
Bst2BI CACGAG 1 cut(s) 558
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 5 cut(s) 681, 1306, 1354, 1579, 1777
Bst6I CTCTTC 4 cut(s) 48, 1338, 1749, 1886
BstAFI CTTAAG 1 cut(s) 1834
BstAPI GCANNNNNTGC 1 cut(s) 1082
BstBAI YACGTR 1 cut(s) 1559
BstC8I GCNNGC 6 cut(s) 241, 278, 639, 942, 1087, 1609
BstDEI CTNAG 8 cut(s) 70, 106, 248, 333, 787, 1112, 1255, 1850
BstF5I GGATG 3 cut(s) 64, 80, 1819
BstFNI CGCG 1 cut(s) 934
BstH2I RGCGCY 1 cut(s) 1786
BstHHI GCGC 2 cut(s) 1248, 1785
BstKTI GATC 6 cut(s) 46, 148, 415, 734, 1183, 1640
BstMAI GTCTC 2 cut(s) 1388, 1850
BstMBI GATC 6 cut(s) 43, 145, 412, 731, 1180, 1637
BstNI CCWGG 1 cut(s) 299
BstNSI RCATGY 4 cut(s) 878, 944, 1173, 1246
BstPAI GACNNNNGTC 1 cut(s) 1047
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 47
BstUI CGCG 1 cut(s) 934
BstV1I GCAGC 7 cut(s) 861, 1144, 1147, 1393, 1623, 1626, 1860
BstV2I GAAGAC 3 cut(s) 108, 123, 422
BstX2I RGATCY 4 cut(s) 43, 145, 1180, 1637
BstYI RGATCY 4 cut(s) 43, 145, 1180, 1637
Bsu36I CCTNAGG 1 cut(s) 1255
BsuRI GGCC 5 cut(s) 194, 480, 752, 1261, 1417
BtgZI GCGATG 1 cut(s) 1813
BtrI CACGTC 1 cut(s) 555
BtsCI GGATG 3 cut(s) 64, 80, 1819
BtsIMutI CAGTG 5 cut(s) 138, 350, 686, 1338, 1359
BtuMI TCGCGA 1 cut(s) 934
Cac8I GCNNGC 6 cut(s) 241, 278, 639, 942, 1087, 1609
CaiI CAGNNNCTG 1 cut(s) 1262
CciI TCATGA 2 cut(s) 187, 1898
CfoI GCGC 2 cut(s) 1248, 1785
Cfr10I RCCGGY 1 cut(s) 1153
Cfr13I GGNCC 6 cut(s) 179, 750, 1042, 1259, 1415, 1426
CseI GACGC 1 cut(s) 897
Csp6I GTAC 4 cut(s) 686, 1116, 1822, 1887
CviAII CATG 8 cut(s) 188, 875, 941, 1170, 1176, 1243, 1589, 1899
CviQI GTAC 4 cut(s) 686, 1116, 1822, 1887
DdeI CTNAG 8 cut(s) 70, 106, 248, 333, 787, 1112, 1255, 1850
DpnI GATC 6 cut(s) 45, 147, 414, 733, 1182, 1639
DpnII GATC 6 cut(s) 43, 145, 412, 731, 1180, 1637
DraI TTTAAA 2 cut(s) 1029, 1599
DraIII CACNNNGTG 1 cut(s) 25
Eam1104I CTCTTC 4 cut(s) 48, 1338, 1749, 1886
EarI CTCTTC 4 cut(s) 48, 1338, 1749, 1886
Ecl136II GAGCTC 1 cut(s) 330
Eco130I CCWWGG 2 cut(s) 1090, 1444
Eco24I GRGCYC 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 1850
Eco32I GATATC 2 cut(s) 1359, 1663
Eco47I GGWCC 3 cut(s) 179, 1042, 1426
Eco53kI GAGCTC 1 cut(s) 330
Eco57I CTGAAG 3 cut(s) 1295, 1743, 1867
Eco72I CACGTG 1 cut(s) 1559
Eco81I CCTNAGG 1 cut(s) 1255
EcoICRI GAGCTC 1 cut(s) 330
EcoO109I RGGNCCY 4 cut(s) 179, 750, 1042, 1259
EcoRII CCWGG 1 cut(s) 297
EcoRV GATATC 2 cut(s) 1359, 1663
EcoT14I CCWWGG 2 cut(s) 1090, 1444
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 2 cut(s) 1090, 1444
FaeI CATG 8 cut(s) 191, 878, 944, 1173, 1179, 1246, 1592, 1902
FalI AAGNNNNNCTT 2 cut(s) 951, 983
FaqI GGGAC 4 cut(s) 121, 192, 1055, 1412
FatI CATG 8 cut(s) 187, 874, 940, 1169, 1175, 1242, 1588, 1898
FauNDI CATATG 1 cut(s) 994
FbaI TGATCA 1 cut(s) 412
FokI GGATG 3 cut(s) 67, 71, 1826
FriOI GRGCYC 1 cut(s) 332
FspBI CTAG 6 cut(s) 476, 689, 1020, 1091, 1476, 1745
GlaI GCGC 2 cut(s) 1247, 1784
GsaI CCCAGC 1 cut(s) 948
HaeII RGCGCY 1 cut(s) 1786
HaeIII GGCC 5 cut(s) 194, 480, 752, 1261, 1417
HapII CCGG 2 cut(s) 321, 1154
HgaI GACGC 1 cut(s) 897
HhaI GCGC 2 cut(s) 1248, 1785
Hin1II CATG 8 cut(s) 191, 878, 944, 1173, 1179, 1246, 1592, 1902
Hin6I GCGC 2 cut(s) 1246, 1783
HinP1I GCGC 2 cut(s) 1246, 1783
HindIII AAGCTT 1 cut(s) 1892
HinfI GANTC 9 cut(s) 104, 206, 288, 349, 581, 595, 765, 1190, 1268
HpaII CCGG 2 cut(s) 321, 1154
HphI GGTGA 3 cut(s) 5, 281, 422
Hpy166II GTNNAC 5 cut(s) 440, 602, 686, 833, 1824
Hpy8I GTNNAC 5 cut(s) 440, 602, 686, 833, 1824
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 7 cut(s) 625, 789, 859, 930, 1068, 1270, 1563
HpyCH4III ACNGT 5 cut(s) 681, 1306, 1354, 1579, 1777
HpyCH4IV ACGT 6 cut(s) 96, 554, 1048, 1131, 1558, 1653
HpyF3I CTNAG 8 cut(s) 70, 106, 248, 333, 787, 1112, 1255, 1850
HpySE526I ACGT 6 cut(s) 96, 554, 1048, 1131, 1558, 1653
Hsp92II CATG 8 cut(s) 191, 878, 944, 1173, 1179, 1246, 1592, 1902
HspAI GCGC 2 cut(s) 1246, 1783
KflI GGGWCCC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 6 cut(s) 43, 145, 412, 731, 1180, 1637
LguI GCTCTTC 2 cut(s) 1338, 1749
LmnI GCTCC 1 cut(s) 634
Lsp1109I GCAGC 7 cut(s) 861, 1144, 1147, 1393, 1623, 1626, 1860
LweI GCATC 7 cut(s) 37, 232, 734, 848, 895, 1373, 1727
MaeI CTAG 6 cut(s) 476, 689, 1020, 1091, 1476, 1745
MaeII ACGT 6 cut(s) 96, 554, 1048, 1131, 1558, 1653
MaeIII GTNAC 3 cut(s) 269, 555, 1865
MalI GATC 6 cut(s) 45, 147, 414, 733, 1182, 1639
MbiI CCGCTC 1 cut(s) 252
MboI GATC 6 cut(s) 43, 145, 412, 731, 1180, 1637
MfeI CAATTG 1 cut(s) 1371
MflI RGATCY 4 cut(s) 43, 145, 1180, 1637
MhlI GDGCHC 2 cut(s) 332, 889
MlyI GAGTC 2 cut(s) 98, 200
MroXI GAANNNNTTC 1 cut(s) 548
MseI TTAA 5 cut(s) 926, 1028, 1598, 1788, 1835
MslI CAYNNNNRTG 1 cut(s) 1174
MspCI CTTAAG 1 cut(s) 1834
MspI CCGG 2 cut(s) 321, 1154
MspR9I CCNGG 1 cut(s) 299
MunI CAATTG 1 cut(s) 1371
Mva1269I GAATGC 1 cut(s) 1309
MvaI CCWGG 1 cut(s) 299
MvnI CGCG 1 cut(s) 934
NdeI CATATG 1 cut(s) 994
NdeII GATC 6 cut(s) 43, 145, 412, 731, 1180, 1637
NlaIII CATG 8 cut(s) 191, 878, 944, 1173, 1179, 1246, 1592, 1902
NlaIV GGNNCC 8 cut(s) 147, 180, 181, 751, 1043, 1416, 1428, 1585
NmuCI GTSAC 2 cut(s) 269, 555
NruI TCGCGA 1 cut(s) 934
NspI RCATGY 4 cut(s) 878, 944, 1173, 1246
PaeI GCATGC 1 cut(s) 944
PagI TCATGA 2 cut(s) 187, 1898
PciSI GCTCTTC 2 cut(s) 1338, 1749
PctI GAATGC 1 cut(s) 1309
PdmI GAANNNNTTC 1 cut(s) 548
PfeI GAWTC 7 cut(s) 288, 349, 581, 595, 765, 1190, 1268
PleI GAGTC 2 cut(s) 98, 200
PmaCI CACGTG 1 cut(s) 1559
PmlI CACGTG 1 cut(s) 1559
PpsI GAGTC 2 cut(s) 98, 200
Ppu21I YACGTR 1 cut(s) 1559
PpuMI RGGWCCY 2 cut(s) 179, 1042
PshAI GACNNNNGTC 1 cut(s) 1047
Psp124BI GAGCTC 1 cut(s) 332
Psp5II RGGWCCY 2 cut(s) 179, 1042
Psp6I CCWGG 1 cut(s) 297
PspCI CACGTG 1 cut(s) 1559
PspFI CCCAGC 1 cut(s) 944
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 8 cut(s) 147, 180, 181, 751, 1043, 1416, 1428, 1585
PspPI GGNCC 6 cut(s) 179, 750, 1042, 1259, 1415, 1426
PspPPI RGGWCCY 2 cut(s) 179, 1042
PstNI CAGNNNCTG 1 cut(s) 1262
PsuI RGATCY 4 cut(s) 43, 145, 1180, 1637
RruI TCGCGA 1 cut(s) 934
RsaI GTAC 4 cut(s) 687, 1117, 1823, 1888
RsaNI GTAC 4 cut(s) 686, 1116, 1822, 1887
RseI CAYNNNNRTG 1 cut(s) 1174
SacI GAGCTC 1 cut(s) 332
SapI GCTCTTC 2 cut(s) 1338, 1749
SaqAI TTAA 5 cut(s) 926, 1028, 1598, 1788, 1835
Sau3AI GATC 6 cut(s) 43, 145, 412, 731, 1180, 1637
Sau96I GGNCC 6 cut(s) 179, 750, 1042, 1259, 1415, 1426
SchI GAGTC 2 cut(s) 98, 200
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 2 cut(s) 332, 889
SfaNI GCATC 7 cut(s) 37, 232, 734, 848, 895, 1373, 1727
SfcI CTRYAG 1 cut(s) 47
SinI GGWCC 3 cut(s) 179, 1042, 1426
SmiMI CAYNNNNRTG 1 cut(s) 1174
SmlI CTYRAG 2 cut(s) 605, 1834
SmoI CTYRAG 2 cut(s) 605, 1834
SpeI ACTAGT 1 cut(s) 1744
SphI GCATGC 1 cut(s) 944
SspMI CTAG 6 cut(s) 476, 689, 1020, 1091, 1476, 1745
SstI GAGCTC 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 2 cut(s) 1090, 1444
TaaI ACNGT 5 cut(s) 681, 1306, 1354, 1579, 1777
TaiI ACGT 6 cut(s) 99, 557, 1051, 1134, 1561, 1656
TaqI TCGA 1 cut(s) 1515
TatI WGTACW 2 cut(s) 685, 1821
TauI GCSGC 6 cut(s) 255, 258, 261, 264, 267, 311
TfiI GAWTC 7 cut(s) 288, 349, 581, 595, 765, 1190, 1268
Tru1I TTAA 5 cut(s) 926, 1028, 1598, 1788, 1835
Tru9I TTAA 5 cut(s) 926, 1028, 1598, 1788, 1835
TscAI CASTG 5 cut(s) 138, 350, 686, 1345, 1359
TseFI GTSAC 2 cut(s) 269, 555
TseI GCWGC 7 cut(s) 849, 1157, 1160, 1406, 1611, 1614, 1873
Tsp45I GTSAC 2 cut(s) 269, 555
TspDTI ATGAA 8 cut(s) 75, 231, 372, 591, 1289, 1308, 1632, 1887
TspGWI ACGGA 4 cut(s) 73, 158, 690, 1133
TspRI CASTG 5 cut(s) 138, 350, 686, 1345, 1359
Vha464I CTTAAG 1 cut(s) 1834
VpaK11BI GGWCC 3 cut(s) 179, 1042, 1426
XapI RAATTY 4 cut(s) 699, 918, 1030, 1390
XceI RCATGY 4 cut(s) 878, 944, 1173, 1246
XmaJI CCTAGG 1 cut(s) 1090
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 6 cut(s) 476, 689, 1020, 1091, 1476, 1745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.