RchiOBHm_Chr1g0350161

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000593
Physical Location & Seq
Forward (+)
43276072 .. 43278967
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57604

Sequence Viewer

Length: 1350 bp
ATGGCAAGAAGAAGGGATCCTTCTTTCTTCAAGATTCTTCTGGGGGATCACTTCTCTCACAAGTTGATAATTCCTGGAGCTTTTCTCAAACATTTTGATGGGAATGTGCCTGAACAGTTTCGTCTTCAAACACCAGCTAAAACTTGGCTTGTTGATGTGGAAAAGGTTGATCATAAGTACTATTTCCAAAAGGGTTGGAACGAATTTGTGAGTGAAAATGGCTTAAGGGTTAAGGAAATTCTAGTTTTTCATTATACTGGAAATTCAGACTTCTCTGTCGACATATATGGAAAAAATACTATCAAAAAGGTGTTTGTAAAAGAAAGTCATGCCTTCCCGCGATCAAAAGATGTTGGCATCCCCACAGATATTGACTATCCTATGGAAGAAGCTGATGAAGATGATGATCCGTCTGTTGAAATATTGGATGATGTTGCACCATACCCAACAAGTAGAGGAGAGAAATATCAGATATCAAGTCCTCTGCCTCACATTGATTATGATCTTGACATTCAAGATAACATATATGATGAGAATAAGCATGAAAGTTATAAAAATGAAGAAGATGAAATTGAGGAAGATGTTGATAATGAAGATGAGGATGAACATGAAAGTGAGGAAGAAGATGAAGATGAAAGTCTGAGTGAAGAAGAAAATGAAACTGCGGAAGATGTTGATTTTGGAGATGAGGATCAAAATGAAAGTGAAGAAGAAAATGAAAGTGAAGATGAGGATCACAATGATGATGATGATGATGGTGACGACAACGACGACTCTATTGAAATCTTGAGCGAAAAACCACCATGCTCTAAAACAAGAGATGCAGGTGGCTCTTCCAGAACTGGAAGTTTCCGAAAACCTGAGATACCTAAGAAGATGAATCTAGCTATGGAAGTTGGAAAGCATAATGCTCTTCAGAGAGCTCTTGATTTTAAATCTAAATCTGTAAATCCTTGTCTTGTGCTTCCCATGCGTGCCTCTTATGCCCGTGGAAGTTACTTGAATTTTCCATTTGACTTTGCCAAGAGATATCTTAGGAAGCAGCCTAGTAACGTCACTTTTCTGGCCGATGGTGTATCTTGGCCTGTCAAGTTCCATTATCCCCAAAACCAAACCAGAGCAGTGGCTGGGTGGTCTGCATTTGCGCGAGTCAATAAATTGAAGGAGAGTGATGTGTGTGTCTTTGTGTTGACTGACGACATCAAATTTGTATTTAGTGTCGTGATTTTCCACATTACAGGTGCTGCAAATTGCACCTTACCATCACCAGGACGAAGGCAAACTGCCACAGCTCAATTGAAATCAAAAAACAACAAGAGAAAGCCGGATAGAAGAAGTAACAGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

449

Amino Acids

51.55

Weight (kDa)

4.68

Isoelectric Point (pI)

59.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 9 - 98 2.4e-14 B3 DNA binding domain
B3 PF02362 327 - 409 3e-10 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 552
AarI CACCTGC 1 cut(s) 815
AasI GACNNNNNNGTC 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 815
AccI GTMKAC 1 cut(s) 279
AccII CGCG 2 cut(s) 340, 1147
AciI CCGC 2 cut(s) 338, 665
AclWI GGATC 6 cut(s) 11, 24, 54, 401, 699, 741
AcoI YGGCCR 1 cut(s) 1065
AcsI RAATTY 5 cut(s) 203, 237, 262, 1003, 1205
AcuI CTGAAG 1 cut(s) 899
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 1268
AflII CTTAAG 1 cut(s) 223
AgsI TTSAA 8 cut(s) 31, 128, 419, 515, 782, 1003, 1162, 1300
AjnI CCWGG 2 cut(s) 73, 1267
AluBI AGCT 6 cut(s) 80, 137, 392, 887, 923, 1292
AluI AGCT 6 cut(s) 80, 137, 392, 887, 923, 1292
Alw21I GWGCWC 1 cut(s) 925
AlwI GGATC 6 cut(s) 11, 24, 54, 401, 699, 741
AlwNI CAGNNNCTG 3 cut(s) 1127, 1244, 1347
AoxI GGCC 2 cut(s) 1065, 1082
ApeKI GCWGC 2 cut(s) 1042, 1244
ApoI RAATTY 5 cut(s) 203, 237, 262, 1003, 1205
ArsI GACNNNNNNTTYG 2 cut(s) 1190, 1222
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 1 cut(s) 1147
AsuHPI GGTGA 2 cut(s) 770, 1257
BamHI GGATCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 925
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 925
BbvI GCAGC 2 cut(s) 1054, 1231
BccI CCATC 4 cut(s) 92, 749, 1064, 1270
BciT130I CCWGG 2 cut(s) 75, 1269
BclI TGATCA 1 cut(s) 169
BfaI CTAG 3 cut(s) 242, 884, 1047
BfrI CTTAAG 1 cut(s) 223
BfuAI ACCTGC 1 cut(s) 815
BisI GCNGC 2 cut(s) 1043, 1245
BlsI GCNGC 2 cut(s) 1044, 1246
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 2 cut(s) 75, 1269
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 75, 1269
BmsI GCATC 2 cut(s) 366, 811
BpiI GAAGAC 1 cut(s) 116
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BpmI CTGGAG 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 808
BsaBI GATNNNNATC 4 cut(s) 405, 501, 690, 732
BsaJI CCNNGG 1 cut(s) 988
Bsc4I CCNNNNNNNGG 1 cut(s) 1268
Bse1I ACTGG 2 cut(s) 262, 847
Bse8I GATNNNNATC 4 cut(s) 405, 501, 690, 732
BseBI CCWGG 2 cut(s) 75, 1269
BseDI CCNNGG 1 cut(s) 988
BseGI GGATG 3 cut(s) 357, 433, 607
BseJI GATNNNNATC 4 cut(s) 405, 501, 690, 732
BseLI CCNNNNNNNGG 1 cut(s) 1268
BseMII CTCAG 2 cut(s) 632, 852
BseNI ACTGG 2 cut(s) 262, 847
BseRI GAGGAG 1 cut(s) 471
BseXI GCAGC 2 cut(s) 1054, 1231
BseYI CCCAGC 1 cut(s) 1127
Bsh1236I CGCG 2 cut(s) 340, 1147
BshFI GGCC 2 cut(s) 1067, 1084
BsiHKAI GWGCWC 1 cut(s) 925
BsiSI CCGG 1 cut(s) 1325
BslI CCNNNNNNNGG 1 cut(s) 1268
BsnI GGCC 2 cut(s) 1067, 1084
Bsp1286I GDGCHC 1 cut(s) 925
Bsp143I GATC 8 cut(s) 16, 46, 169, 341, 406, 502, 691, 733
BspACI CCGC 2 cut(s) 338, 665
BspANI GGCC 2 cut(s) 1067, 1084
BspCNI CTCAG 2 cut(s) 633, 853
BspFNI CGCG 2 cut(s) 340, 1147
BspLI GGNNCC 1 cut(s) 18
BspMI ACCTGC 1 cut(s) 815
BspPI GGATC 6 cut(s) 11, 24, 54, 401, 699, 741
BspQI GCTCTTC 2 cut(s) 838, 918
BspTI CTTAAG 1 cut(s) 223
BsrI ACTGG 2 cut(s) 262, 847
BssECI CCNNGG 1 cut(s) 988
BssMI GATC 8 cut(s) 16, 46, 169, 341, 406, 502, 691, 733
Bst2UI CCWGG 2 cut(s) 75, 1269
Bst4CI ACNGT 1 cut(s) 117
Bst6I CTCTTC 2 cut(s) 838, 918
BstAFI CTTAAG 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 975
BstDEI CTNAG 4 cut(s) 641, 861, 870, 1034
BstDSI CCRYGG 1 cut(s) 988
BstF5I GGATG 3 cut(s) 357, 433, 607
BstFNI CGCG 2 cut(s) 340, 1147
BstHHI GCGC 1 cut(s) 1147
BstKTI GATC 8 cut(s) 19, 49, 172, 344, 409, 505, 694, 736
BstMBI GATC 8 cut(s) 16, 46, 169, 341, 406, 502, 691, 733
BstMWI GCNNNNNNNGC 2 cut(s) 970, 983
BstNI CCWGG 2 cut(s) 75, 1269
BstSCI CCNGG 2 cut(s) 73, 1267
BstUI CGCG 2 cut(s) 340, 1147
BstV1I GCAGC 2 cut(s) 1054, 1231
BstV2I GAAGAC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 16
BstXI CCANNNNNNTGG 1 cut(s) 1123
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 2 cut(s) 1067, 1084
BtgI CCRYGG 1 cut(s) 988
BtsCI GGATG 3 cut(s) 357, 433, 607
BtsI GCAGTG 1 cut(s) 1128
BtsIMutI CAGTG 1 cut(s) 1128
BveI ACCTGC 1 cut(s) 815
Cac8I GCNNGC 1 cut(s) 975
CaiI CAGNNNCTG 3 cut(s) 1127, 1244, 1347
CfoI GCGC 1 cut(s) 1147
Csp6I GTAC 1 cut(s) 178
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CviAII CATG 5 cut(s) 329, 542, 608, 804, 970
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 4 cut(s) 641, 861, 870, 1034
DpnI GATC 8 cut(s) 18, 48, 171, 343, 408, 504, 693, 735
DpnII GATC 8 cut(s) 16, 46, 169, 341, 406, 502, 691, 733
DraI TTTAAA 1 cut(s) 934
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 1 cut(s) 1065
Eam1104I CTCTTC 2 cut(s) 838, 918
EarI CTCTTC 2 cut(s) 838, 918
Ecl136II GAGCTC 1 cut(s) 923
Eco24I GRGCYC 1 cut(s) 925
Eco32I GATATC 2 cut(s) 474, 1031
Eco53kI GAGCTC 1 cut(s) 923
Eco57I CTGAAG 1 cut(s) 899
EcoICRI GAGCTC 1 cut(s) 923
EcoRII CCWGG 2 cut(s) 73, 1267
EcoRV GATATC 2 cut(s) 474, 1031
EcoT38I GRGCYC 1 cut(s) 925
FaeI CATG 5 cut(s) 332, 545, 611, 807, 973
FalI AAGNNNNNCTT 1 cut(s) 36
FatI CATG 5 cut(s) 328, 541, 607, 803, 969
FauI CCCGC 1 cut(s) 345
FbaI TGATCA 1 cut(s) 169
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 2 cut(s) 1043, 1245
FokI GGATG 3 cut(s) 344, 440, 614
FriOI GRGCYC 1 cut(s) 925
Fsp4HI GCNGC 2 cut(s) 1043, 1245
FspBI CTAG 3 cut(s) 242, 884, 1047
GlaI GCGC 1 cut(s) 1146
GluI GCNGC 2 cut(s) 1043, 1245
GsaI CCCAGC 1 cut(s) 1131
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 2 cut(s) 1067, 1084
HapII CCGG 1 cut(s) 1325
HhaI GCGC 1 cut(s) 1147
Hin1II CATG 5 cut(s) 332, 545, 611, 807, 973
Hin6I GCGC 1 cut(s) 1145
HinP1I GCGC 1 cut(s) 1145
HincII GTYRAC 2 cut(s) 280, 1191
HindII GTYRAC 2 cut(s) 280, 1191
HinfI GANTC 5 cut(s) 34, 773, 880, 1149, 1344
HpaII CCGG 1 cut(s) 1325
HphI GGTGA 2 cut(s) 770, 1257
Hpy166II GTNNAC 2 cut(s) 280, 1191
Hpy188I TCNGA 6 cut(s) 268, 471, 642, 854, 918, 1349
Hpy188III TCNNGA 7 cut(s) 31, 506, 515, 787, 837, 926, 1222
Hpy8I GTNNAC 2 cut(s) 280, 1191
Hpy99I CGWCG 1 cut(s) 773
HpyAV CCTTC 5 cut(s) 6, 30, 343, 1156, 1269
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4IV ACGT 1 cut(s) 1053
HpyCH4V TGCA 5 cut(s) 437, 824, 1139, 1247, 1254
HpyF10VI GCNNNNNNNGC 2 cut(s) 970, 983
HpyF3I CTNAG 4 cut(s) 641, 861, 870, 1034
HpySE526I ACGT 1 cut(s) 1053
Hsp92II CATG 5 cut(s) 332, 545, 611, 807, 973
HspAI GCGC 1 cut(s) 1145
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 8 cut(s) 16, 46, 169, 341, 406, 502, 691, 733
LguI GCTCTTC 2 cut(s) 838, 918
LmnI GCTCC 1 cut(s) 77
Lsp1109I GCAGC 2 cut(s) 1054, 1231
LweI GCATC 2 cut(s) 366, 811
MaeI CTAG 3 cut(s) 242, 884, 1047
MaeII ACGT 1 cut(s) 1053
MaeIII GTNAC 5 cut(s) 758, 995, 1049, 1054, 1337
MalI GATC 8 cut(s) 18, 48, 171, 343, 408, 504, 693, 735
MboI GATC 8 cut(s) 16, 46, 169, 341, 406, 502, 691, 733
MfeI CAATTG 1 cut(s) 1295
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 925
MlyI GAGTC 2 cut(s) 767, 1158
MmeI TCCRAC 2 cut(s) 176, 877
MnlI CCTC 9 cut(s) 449, 492, 498, 568, 592, 610, 682, 724, 988
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 3 cut(s) 224, 231, 933
MslI CAYNNNNRTG 3 cut(s) 96, 612, 741
MspCI CTTAAG 1 cut(s) 223
MspI CCGG 1 cut(s) 1325
MspR9I CCNGG 2 cut(s) 75, 1269
MunI CAATTG 1 cut(s) 1295
MvaI CCWGG 2 cut(s) 75, 1269
MvnI CGCG 2 cut(s) 340, 1147
MwoI GCNNNNNNNGC 2 cut(s) 970, 983
NdeII GATC 8 cut(s) 16, 46, 169, 341, 406, 502, 691, 733
NlaIII CATG 5 cut(s) 332, 545, 611, 807, 973
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 2 cut(s) 758, 1054
PaqCI CACCTGC 1 cut(s) 815
PciSI GCTCTTC 2 cut(s) 838, 918
PcsI WCGNNNNNNNCGW 1 cut(s) 768
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 3 cut(s) 34, 880, 1344
PfoI TCCNGGA 1 cut(s) 73
PkrI GCNGC 2 cut(s) 1044, 1246
PleI GAGTC 2 cut(s) 767, 1157
PpsI GAGTC 2 cut(s) 767, 1157
PsiI TTATAA 1 cut(s) 552
Psp124BI GAGCTC 1 cut(s) 925
Psp6I CCWGG 2 cut(s) 73, 1267
PspFI CCCAGC 1 cut(s) 1127
PspGI CCWGG 2 cut(s) 73, 1267
PspN4I GGNNCC 1 cut(s) 18
PstNI CAGNNNCTG 3 cut(s) 1127, 1244, 1347
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 3 cut(s) 96, 612, 741
SacI GAGCTC 1 cut(s) 925
SalI GTCGAC 1 cut(s) 278
SapI GCTCTTC 2 cut(s) 838, 918
SaqAI TTAA 3 cut(s) 224, 231, 933
SatI GCNGC 2 cut(s) 1043, 1245
Sau3AI GATC 8 cut(s) 16, 46, 169, 341, 406, 502, 691, 733
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 2 cut(s) 767, 1158
ScrFI CCNGG 2 cut(s) 75, 1269
SduI GDGCHC 1 cut(s) 925
SfaNI GCATC 2 cut(s) 366, 811
SmiMI CAYNNNNRTG 3 cut(s) 96, 612, 741
SmlI CTYRAG 2 cut(s) 223, 787
SmoI CTYRAG 2 cut(s) 223, 787
SsiI CCGC 2 cut(s) 338, 665
SspI AATATT 1 cut(s) 423
SspMI CTAG 3 cut(s) 242, 884, 1047
SstI GAGCTC 1 cut(s) 925
StyD4I CCNGG 2 cut(s) 73, 1267
TaaI ACNGT 1 cut(s) 117
TaiI ACGT 1 cut(s) 1056
TaqI TCGA 1 cut(s) 279
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 3 cut(s) 34, 880, 1344
Tru1I TTAA 3 cut(s) 224, 231, 933
Tru9I TTAA 3 cut(s) 224, 231, 933
TscAI CASTG 1 cut(s) 1128
TseFI GTSAC 2 cut(s) 758, 1054
TseI GCWGC 2 cut(s) 1042, 1244
Tsp45I GTSAC 2 cut(s) 758, 1054
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 1 cut(s) 1128
Vha464I CTTAAG 1 cut(s) 223
XapI RAATTY 5 cut(s) 203, 237, 262, 1003, 1205
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 3 cut(s) 242, 884, 1047
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.