Prupe.7G167900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0018347
Physical Location & Seq
Reverse (-)
17090158 .. 17090478
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G167900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 321 bp
ATGAAAACCCATCTATGCATTCCCAGGATGAGAAGCAACGTCAACTCGTGCAGCAACAAAACCAAACGCCTGTCTCCGATGACTCTGCTCGAGCGGTTTCGCGAGGCGGTTTTCCGTTTGATCATGCTGTCTGCTGTCTCCTCCAACAAGTCCACAAGCCACGCTGGCCGATCCAGCCCAGATGCGCAGCGGTATTATTGTCCGCATGATGACCCTCACCACAGCGAGGCAGTAGCCGATTGCATCGAGTTCATCAAGAAAAAAGCTTCGCCGGAGGACGGCAACCGGGGCTCTTCCGCTAGTTCTAGTAAGCTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.83

Weight (kDa)

9.59

Isoelectric Point (pI)

54.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11880
prunus_persica Prupe.7G167900_v2.0.a1
rosa_laevigata RLG00000016886
rosa_roxburghii Rroxscaffold_2G00143040
rosa_rugosa Rorug02G0080000
rosa_samantha Rh2AG130000 Rh2BG133100 Rh2CG133700 Rh2DG134000
rosa_wichuraiana Rw2G010010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 186
AccBSI CCGCTC 1 cut(s) 94
AccII CGCG 1 cut(s) 102
AciI CCGC 5 cut(s) 94, 107, 190, 203, 297
AclWI GGATC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 166
AfiI CCNNNNNNNGG 2 cut(s) 226, 278
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 2 cut(s) 266, 313
AluI AGCT 2 cut(s) 266, 313
Alw26I GTCTC 2 cut(s) 78, 142
AlwI GGATC 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 51, 187
AspLEI GCGC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 89
BanII GRGCYC 1 cut(s) 293
BauI CACGAG 1 cut(s) 46
BbvI GCAGC 2 cut(s) 63, 199
BccI CCATC 1 cut(s) 18
BceAI ACGGC 1 cut(s) 295
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BciT130I CCWGG 1 cut(s) 25
BclI TGATCA 1 cut(s) 120
BcnI CCSGG 1 cut(s) 287
BcoDI GTCTC 2 cut(s) 78, 142
BfaI CTAG 2 cut(s) 300, 306
BglI GCCNNNNNGGC 1 cut(s) 165
BisI GCNGC 2 cut(s) 52, 188
BlsI GCNGC 2 cut(s) 53, 189
Bme1390I CCNGG 2 cut(s) 25, 287
BmeT110I CYCGRG 1 cut(s) 89
BmrFI CCNGG 2 cut(s) 25, 287
BmsI GCATC 2 cut(s) 172, 252
BpuMI CCSGG 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 23, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 278
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 23, 286
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 2 cut(s) 226, 278
BseRI GAGGAG 1 cut(s) 130
BseXI GCAGC 2 cut(s) 63, 199
BsgI GTGCAG 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 2 cut(s) 272, 286
BslI CCNNNNNNNGG 2 cut(s) 226, 278
BsmAI GTCTC 2 cut(s) 78, 142
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 2 cut(s) 120, 170
Bsp68I TCGCGA 1 cut(s) 102
BspACI CCGC 5 cut(s) 94, 107, 190, 203, 297
BspANI GGCC 1 cut(s) 168
BspFNI CGCG 1 cut(s) 102
BspPI GGATC 1 cut(s) 165
BspQI GCTCTTC 1 cut(s) 298
BsrBI CCGCTC 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 23, 286
BssMI GATC 2 cut(s) 120, 170
BssSI CACGAG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 25
Bst6I CTCTTC 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 166
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 2 cut(s) 123, 173
BstMAI GTCTC 2 cut(s) 78, 142
BstMBI GATC 2 cut(s) 120, 170
BstMWI GCNNNNNNNGC 3 cut(s) 165, 174, 288
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 23, 285
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 63, 199
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 33
BtuMI TCGCGA 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 166
CfoI GCGC 1 cut(s) 187
CviAII CATG 2 cut(s) 124, 206
CviJI RGCY 7 cut(s) 159, 168, 177, 236, 266, 291, 313
CviKI_1 RGCY 7 cut(s) 159, 168, 177, 236, 266, 291, 313
DpnI GATC 2 cut(s) 122, 172
DpnII GATC 2 cut(s) 120, 170
EaeI YGGCCR 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 293
FaeI CATG 2 cut(s) 127, 209
FaiI YATR 3 cut(s) 16, 125, 207
FatI CATG 2 cut(s) 123, 205
FbaI TGATCA 1 cut(s) 120
Fnu4HI GCNGC 2 cut(s) 52, 188
FokI GGATG 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 52, 188
FspBI CTAG 2 cut(s) 300, 306
FspI TGCGCA 1 cut(s) 186
GlaI GCGC 1 cut(s) 186
GluI GCNGC 2 cut(s) 52, 188
HaeIII GGCC 1 cut(s) 168
HapII CCGG 2 cut(s) 272, 286
HhaI GCGC 1 cut(s) 187
Hin1II CATG 2 cut(s) 127, 209
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 1 cut(s) 82
HpaII CCGG 2 cut(s) 272, 286
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 43, 153
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 101, 256
Hpy8I GTNNAC 2 cut(s) 43, 153
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 3 cut(s) 18, 51, 243
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 174, 288
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 2 cut(s) 127, 209
HspAI GCGC 1 cut(s) 185
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 2 cut(s) 120, 170
LguI GCTCTTC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 8 cut(s) 10, 37, 83, 150, 187, 192, 285, 299
Lsp1109I GCAGC 2 cut(s) 63, 199
LweI GCATC 2 cut(s) 172, 252
MaeI CTAG 2 cut(s) 300, 306
MaeII ACGT 1 cut(s) 39
MalI GATC 2 cut(s) 122, 172
MbiI CCGCTC 1 cut(s) 94
MboI GATC 2 cut(s) 120, 170
MboII GAAGA 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 293
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 5 cut(s) 97, 151, 220, 225, 268
Mph1103I ATGCAT 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 2 cut(s) 272, 286
MspR9I CCNGG 2 cut(s) 25, 287
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 1 cut(s) 25
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 3 cut(s) 165, 174, 288
NciI CCSGG 1 cut(s) 287
NdeII GATC 2 cut(s) 120, 170
NlaIII CATG 2 cut(s) 127, 209
NruI TCGCGA 1 cut(s) 102
NsbI TGCGCA 1 cut(s) 186
NsiI ATGCAT 1 cut(s) 20
PaeR7I CTCGAG 1 cut(s) 89
PciSI GCTCTTC 1 cut(s) 298
PctI GAATGC 1 cut(s) 18
PkrI GCNGC 2 cut(s) 53, 189
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspXI VCTCGAGB 1 cut(s) 89
RruI TCGCGA 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 298
SatI GCNGC 2 cut(s) 52, 188
Sau3AI GATC 2 cut(s) 120, 170
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 25, 287
SduI GDGCHC 1 cut(s) 293
SetI ASST 3 cut(s) 42, 268, 315
SfaNI GCATC 2 cut(s) 172, 252
Sfr274I CTCGAG 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SsiI CCGC 5 cut(s) 94, 107, 190, 203, 297
SspMI CTAG 2 cut(s) 300, 306
StyD4I CCNGG 2 cut(s) 23, 285
TaiI ACGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 90, 246
TseI GCWGC 2 cut(s) 51, 187
TspDTI ATGAA 2 cut(s) 17, 241
TspGWI ACGGA 1 cut(s) 104
XhoI CTCGAG 1 cut(s) 89
XspI CTAG 2 cut(s) 300, 306
Zsp2I ATGCAT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.