Prupe.7G180100_v2.0.a1

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
17664213 .. 17668152
3940 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G180100.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 687 bp
ATGGCTGTAGCGTTGAAGCGGGGGAGAGTAAAGCGGTGGATTTTTGAGTCCATTACAGAGAAGTTTACAGGGGCTGTACCCAATAACTCCGACGATTTCAAGAGCCGTATGCTCAGGCGGAACCCATATATATGGCTATTTGAAACCACGGGTGCAGCAGCCCCAAAATCTGGCAATTCTGAATGTCAGAAGGTAGTTGATATGATTCCTGTTCCTCCTCAACAGGCCTCCAGAGAGCATCAGCATTCCCAAAATGATGGAAAGCACGGGGGCTCGATGAAGCGGGGGAGAGTAAAGCGGCAGATTTTTGAGTCGATTATAGAGAATTTTACAGGGGCTGTACCCAATAACTCCGACGATTTCAAGAGCTGTATGCTCAGGTGGAACCCATATGTATGGCTATTTGAAACCACGGGTGCAGCAGCCCCAGAATATGGCAATTCTGAATGTCAGGAGGTAGTTGATATGATTCCTGTTCCTCCTCAACAGGCCTCTAGAGAGCATGAGCATTCCCAAAATGATGGAAAGCACGGGGGCTCTGTCTTCAACACCATTATTAGTGGCAATATAATTTACGCTAACAATTCCACCAGGGTAGGAATTTCGCATTCTAATTCTATGAATGAGGTGAGAGAAATACGGAATCTGGTTTTGGATTTTGGATGCCAACGCATCAAAGACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

229

Amino Acids

25.67

Weight (kDa)

8.68

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 170, 434
AciI CCGC 5 cut(s) 19, 34, 118, 283, 298
AcsI RAATTY 2 cut(s) 325, 600
AfaI GTAC 2 cut(s) 78, 342
AfiI CCNNNNNNNGG 2 cut(s) 170, 434
AgsI TTSAA 6 cut(s) 16, 100, 143, 364, 407, 547
AjnI CCWGG 1 cut(s) 590
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
AluBI AGCT 1 cut(s) 369
AluI AGCT 1 cut(s) 369
AlwNI CAGNNNCTG 2 cut(s) 74, 338
AoxI GGCC 2 cut(s) 225, 489
ApeKI GCWGC 4 cut(s) 155, 158, 419, 422
ApoI RAATTY 2 cut(s) 325, 600
AsuHPI GGTGA 1 cut(s) 640
BanII GRGCYC 2 cut(s) 275, 539
BbsI GAAGAC 1 cut(s) 535
BbvI GCAGC 4 cut(s) 167, 170, 431, 434
BccI CCATC 2 cut(s) 251, 515
BceAI ACGGC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 592
BfaI CTAG 1 cut(s) 495
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 5 cut(s) 156, 159, 299, 420, 423
BlsI GCNGC 5 cut(s) 157, 160, 300, 421, 424
Bme1390I CCNGG 1 cut(s) 592
BmiI GGNNCC 2 cut(s) 122, 386
BmrFI CCNGG 1 cut(s) 592
BmsI GCATC 3 cut(s) 247, 653, 681
BpiI GAAGAC 1 cut(s) 535
BpmI CTGGAG 1 cut(s) 214
Bpu10I CCTNAGC 2 cut(s) 113, 377
BsaJI CCNNGG 3 cut(s) 147, 411, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 434
BseBI CCWGG 1 cut(s) 592
BseDI CCNNGG 3 cut(s) 147, 411, 591
BseGI GGATG 1 cut(s) 668
BseLI CCNNNNNNNGG 2 cut(s) 170, 434
BseMII CTCAG 2 cut(s) 127, 391
BseRI GAGGAG 2 cut(s) 207, 471
BseXI GCAGC 4 cut(s) 167, 170, 431, 434
BsgI GTGCAG 2 cut(s) 174, 438
BshFI GGCC 2 cut(s) 227, 491
BslI CCNNNNNNNGG 2 cut(s) 170, 434
BsmI GAATGC 3 cut(s) 244, 508, 607
BsnI GGCC 2 cut(s) 227, 491
Bsp1286I GDGCHC 2 cut(s) 275, 539
BspACI CCGC 5 cut(s) 19, 34, 118, 283, 298
BspANI GGCC 2 cut(s) 227, 491
BspCNI CTCAG 2 cut(s) 126, 390
BspLI GGNNCC 2 cut(s) 122, 386
BssECI CCNNGG 3 cut(s) 147, 411, 591
Bst2UI CCWGG 1 cut(s) 592
BstDEI CTNAG 2 cut(s) 113, 377
BstDSI CCRYGG 2 cut(s) 147, 411
BstF5I GGATG 1 cut(s) 668
BstNI CCWGG 1 cut(s) 592
BstSCI CCNGG 1 cut(s) 590
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 4 cut(s) 167, 170, 431, 434
BstV2I GAAGAC 1 cut(s) 535
BstXI CCANNNNNNTGG 4 cut(s) 132, 257, 396, 521
BsuRI GGCC 2 cut(s) 227, 491
BtgI CCRYGG 2 cut(s) 147, 411
BtsCI GGATG 1 cut(s) 668
CaiI CAGNNNCTG 2 cut(s) 74, 338
Csp6I GTAC 2 cut(s) 77, 341
CviAII CATG 1 cut(s) 503
CviQI GTAC 2 cut(s) 77, 341
DdeI CTNAG 2 cut(s) 113, 377
EciI GGCGGA 1 cut(s) 133
Eco147I AGGCCT 2 cut(s) 227, 491
Eco24I GRGCYC 2 cut(s) 275, 539
EcoRII CCWGG 1 cut(s) 590
EcoT38I GRGCYC 2 cut(s) 275, 539
FaeI CATG 1 cut(s) 506
FatI CATG 1 cut(s) 502
FauI CCCGC 2 cut(s) 12, 276
FauNDI CATATG 1 cut(s) 391
Fnu4HI GCNGC 5 cut(s) 156, 159, 299, 420, 423
FokI GGATG 1 cut(s) 675
FriOI GRGCYC 2 cut(s) 275, 539
Fsp4HI GCNGC 5 cut(s) 156, 159, 299, 420, 423
FspBI CTAG 1 cut(s) 495
GluI GCNGC 5 cut(s) 156, 159, 299, 420, 423
GsuI CTGGAG 1 cut(s) 214
HaeIII GGCC 2 cut(s) 227, 491
Hin1II CATG 1 cut(s) 506
HinfI GANTC 5 cut(s) 47, 205, 311, 469, 643
HphI GGTGA 1 cut(s) 640
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 5 cut(s) 91, 181, 189, 355, 445
Hpy188III TCNNGA 5 cut(s) 100, 231, 364, 452, 495
Hpy8I GTNNAC 1 cut(s) 66
Hpy99I CGWCG 2 cut(s) 95, 359
HpyAV CCTTC 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 155, 419
HpyF3I CTNAG 2 cut(s) 113, 377
Hsp92II CATG 1 cut(s) 506
Lsp1109I GCAGC 4 cut(s) 167, 170, 431, 434
LweI GCATC 3 cut(s) 247, 653, 681
MaeI CTAG 1 cut(s) 495
MboII GAAGA 1 cut(s) 535
MfeI CAATTG 1 cut(s) 682
MhlI GDGCHC 2 cut(s) 275, 539
MluCI AATT 8 cut(s) 175, 325, 439, 570, 583, 600, 613, 682
MlyI GAGTC 2 cut(s) 56, 320
MmeI TCCRAC 2 cut(s) 114, 378
MnlI CCTC 8 cut(s) 225, 228, 238, 448, 489, 492, 502, 619
MslI CAYNNNNRTG 2 cut(s) 130, 394
MspR9I CCNGG 1 cut(s) 592
MunI CAATTG 1 cut(s) 682
Mva1269I GAATGC 3 cut(s) 244, 508, 607
MvaI CCWGG 1 cut(s) 592
NdeI CATATG 1 cut(s) 391
NlaIII CATG 1 cut(s) 506
NlaIV GGNNCC 2 cut(s) 122, 386
PceI AGGCCT 2 cut(s) 227, 491
PctI GAATGC 3 cut(s) 244, 508, 607
PfeI GAWTC 3 cut(s) 205, 469, 643
PflMI CCANNNNNTGG 2 cut(s) 170, 434
PkrI GCNGC 5 cut(s) 157, 160, 300, 421, 424
PleI GAGTC 2 cut(s) 55, 319
PpsI GAGTC 2 cut(s) 55, 319
Psp6I CCWGG 1 cut(s) 590
PspGI CCWGG 1 cut(s) 590
PspN4I GGNNCC 2 cut(s) 122, 386
PstNI CAGNNNCTG 2 cut(s) 74, 338
RsaI GTAC 2 cut(s) 78, 342
RsaNI GTAC 2 cut(s) 77, 341
RseI CAYNNNNRTG 2 cut(s) 130, 394
SatI GCNGC 5 cut(s) 156, 159, 299, 420, 423
SchI GAGTC 2 cut(s) 56, 320
ScrFI CCNGG 1 cut(s) 592
SduI GDGCHC 2 cut(s) 275, 539
SetI ASST 5 cut(s) 195, 371, 383, 459, 630
SfaNI GCATC 3 cut(s) 247, 653, 681
SfcI CTRYAG 1 cut(s) 6
SmiMI CAYNNNNRTG 2 cut(s) 130, 394
Sse9I AATT 8 cut(s) 175, 325, 439, 570, 583, 600, 613, 682
SseBI AGGCCT 2 cut(s) 227, 491
SsiI CCGC 5 cut(s) 19, 34, 118, 283, 298
SspMI CTAG 1 cut(s) 495
StuI AGGCCT 2 cut(s) 227, 491
StyD4I CCNGG 1 cut(s) 590
TaqI TCGA 2 cut(s) 275, 314
TasI AATT 8 cut(s) 175, 325, 439, 570, 583, 600, 613, 682
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 3 cut(s) 205, 469, 643
TseI GCWGC 4 cut(s) 155, 158, 419, 422
TspDTI ATGAA 2 cut(s) 293, 635
TspGWI ACGGA 1 cut(s) 655
Van91I CCANNNNNTGG 2 cut(s) 170, 434
XapI RAATTY 2 cut(s) 325, 600
XbaI TCTAGA 1 cut(s) 494
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.