Prupe.7G180200_v2.0.a1

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0021225
Physical Location & Seq
Reverse (-)
17669843 .. 17671259
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G180200.1

Sequence Viewer

Length: 1038 bp
ATGGTGATGGTGTATCAAGTCGGATCGACGAAGATCGCACAAAATCAAATAGAATTGGATCGCTGCCCAGCGATGAAGCGAAATCTAGAGGAGCATAGTGAGATTGAATCCAAACCCTCCGACGATCGAGTCGGATCGACGCAGATCGAACAAAATCAAATGGAATTGGATCGCTACCCGGCGATGAAGCGGATTCGTGGGATTGAATCCAAACCCTCCGATCGAGTCGGACCTACTGTCGCTAGGGTGGTGGGGCGGCTTGGAGAGGAGTATATAGAGATTATATCCAATCCCTCCGACGATTTTGACTGCCGCATGCTCGAGCGGAACCCATATGAATGGCAATTTGGAGTCAGAGGCGCTAGTGGAACTGAATTCGAGGGTGGGATTTATCATGGGCGGATCCAGTTTCCGAAGGAGTACCCATCGAAGCCTCCTTCATTCACGCTTTTGACGGAAAATGGTCGCTTCCAAACCCACAAGAAGATCAGGATAAGGCGACTGGATGATTGGGAGCCATCATGGAGGGTGCGAGATGCTTTAGGTGCACTTATCGATGAAATGCCCACCTACCCAGATGGTGAATTGGGTTCAGTAGAATACAATAAGGAAGAAAGGCGTGATCTCGCCATCAAATCTCGTGTAGCAGCCCCAAAATGTGGCACTTCTGAACGTCAGAAGTTAAGTGCTGAGATTCATAAATATCTGCTAAGCAAATCACCACCTGTTCCTGTTCCTCAACTGATCCCCTCACAGGCCTCCAACGGCACAGGCGGCGGCTATGTCGTCAACGGCGGCTATGTCGTCAGTGGGAATACATTTCATGCTACCAATTCCAACGGGTCAAATAAAATTTGTAATATCAAAGACAAAAAGGGACCGCCATCATCCGCCTGCAAACCAGCAGATAAACCAGCAGATGGTGAAATGGAAAATGGATGGTCCCCCACAACTCACAAATTGATTCACAACCATGGAACTCATCACTTCAATGGTAACGCGAACGAGAGTAACAGAGTCAAAGACAAAACCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 ko04141 ko05012 map04120 map04141 map05012
Pfam Domains
Protein Families
UQ_con

Protein Analysis

346

Amino Acids

38.56

Weight (kDa)

8.16

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AccB7I CCANNNNNTGG 2 cut(s) 659, 920
AccBSI CCGCTC 1 cut(s) 325
AccII CGCG 1 cut(s) 1001
AclWI GGATC 7 cut(s) 31, 66, 142, 177, 397, 410, 739
AcsI RAATTY 2 cut(s) 374, 852
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 3 cut(s) 659, 754, 920
AgsI TTSAA 3 cut(s) 107, 206, 991
AhdI GACNNNNNGTC 1 cut(s) 236
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AluBI AGCT 1 cut(s) 1035
AluI AGCT 1 cut(s) 1035
Alw21I GWGCWC 1 cut(s) 550
Alw44I GTGCAC 1 cut(s) 546
AlwI GGATC 7 cut(s) 31, 66, 142, 177, 397, 410, 739
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 1 cut(s) 756
ApaLI GTGCAC 1 cut(s) 546
ApeKI GCWGC 2 cut(s) 63, 647
ApoI RAATTY 2 cut(s) 374, 852
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 3 cut(s) 230, 878, 942
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 4 cut(s) 16, 593, 711, 935
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 3 cut(s) 230, 878, 942
BaeGI GKGCMC 1 cut(s) 550
BamHI GGATCC 1 cut(s) 402
BauI CACGAG 1 cut(s) 639
Bbv12I GWGCWC 1 cut(s) 550
BbvI GCAGC 2 cut(s) 50, 659
BccI CCATC 7 cut(s) 433, 526, 572, 638, 892, 914, 933
BceAI ACGGC 2 cut(s) 781, 808
BcnI CCSGG 1 cut(s) 179
BfaI CTAG 3 cut(s) 86, 243, 363
BfoI RGCGCY 1 cut(s) 363
BisI GCNGC 7 cut(s) 64, 257, 313, 648, 775, 778, 796
BlpI GCTNAGC 1 cut(s) 710
BlsI GCNGC 7 cut(s) 65, 258, 314, 649, 776, 779, 797
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 3 cut(s) 230, 878, 942
BmeRI GACNNNNNGTC 1 cut(s) 236
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 3 cut(s) 230, 878, 942
BmiI GGNNCC 5 cut(s) 329, 404, 516, 879, 944
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 1 cut(s) 526
Bpu1102I GCTNAGC 1 cut(s) 710
BpuMI CCSGG 1 cut(s) 179
Bsa29I ATCGAT 1 cut(s) 555
BsaJI CCNNGG 1 cut(s) 973
Bsc4I CCNNNNNNNGG 3 cut(s) 659, 754, 920
Bse1I ACTGG 2 cut(s) 406, 507
BseCI ATCGAT 1 cut(s) 555
BseDI CCNNGG 1 cut(s) 973
BseGI GGATG 3 cut(s) 511, 887, 944
BseLI CCNNNNNNNGG 3 cut(s) 659, 754, 920
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 2 cut(s) 406, 507
BseRI GAGGAG 2 cut(s) 104, 281
BseSI GKGCMC 1 cut(s) 550
BseXI GCAGC 2 cut(s) 50, 659
BseYI CCCAGC 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 1001
Bsh1285I CGRYCG 2 cut(s) 127, 223
BshFI GGCC 1 cut(s) 758
BshVI ATCGAT 1 cut(s) 555
BsiEI CGRYCG 2 cut(s) 127, 223
BsiHKAI GWGCWC 1 cut(s) 550
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 2 cut(s) 891, 928
BslI CCNNNNNNNGG 3 cut(s) 659, 754, 920
BsmFI GGGAC 2 cut(s) 891, 928
BsnI GGCC 1 cut(s) 758
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 550
Bsp1720I GCTNAGC 1 cut(s) 710
Bsp19I CCATGG 1 cut(s) 973
BspANI GGCC 1 cut(s) 758
BspCNI CTCAG 1 cut(s) 682
BspDI ATCGAT 1 cut(s) 555
BspFNI CGCG 1 cut(s) 1001
BspLI GGNNCC 5 cut(s) 329, 404, 516, 879, 944
BspPI GGATC 7 cut(s) 31, 66, 142, 177, 397, 410, 739
BsrBI CCGCTC 1 cut(s) 325
BsrI ACTGG 2 cut(s) 406, 507
BssECI CCNNGG 1 cut(s) 973
BssSI CACGAG 1 cut(s) 639
BssT1I CCWWGG 1 cut(s) 973
Bst2BI CACGAG 1 cut(s) 639
Bst4CI ACNGT 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 317, 895
BstDEI CTNAG 2 cut(s) 690, 710
BstDSI CCRYGG 1 cut(s) 973
BstF5I GGATG 3 cut(s) 511, 887, 944
BstFNI CGCG 1 cut(s) 1001
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 1 cut(s) 362
BstMCI CGRYCG 2 cut(s) 127, 223
BstMWI GCNNNNNNNGC 2 cut(s) 545, 774
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 550
BstUI CGCG 1 cut(s) 1001
BstV1I GCAGC 2 cut(s) 50, 659
BstX2I RGATCY 1 cut(s) 402
BstXI CCANNNNNNTGG 1 cut(s) 339
BstYI RGATCY 1 cut(s) 402
Bsu15I ATCGAT 1 cut(s) 555
BsuRI GGCC 1 cut(s) 758
BsuTUI ATCGAT 1 cut(s) 555
BtgI CCRYGG 1 cut(s) 973
BtgZI GCGATG 2 cut(s) 86, 197
BtsCI GGATG 3 cut(s) 511, 887, 944
BtsIMutI CAGTG 1 cut(s) 814
Cac8I GCNNGC 2 cut(s) 317, 895
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 3 cut(s) 230, 878, 942
ClaI ATCGAT 1 cut(s) 555
CseI GACGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 421
CviAII CATG 5 cut(s) 316, 395, 522, 824, 974
CviJI RGCY 8 cut(s) 259, 433, 517, 650, 758, 780, 798, 1035
CviKI_1 RGCY 8 cut(s) 259, 433, 517, 650, 758, 780, 798, 1035
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 2 cut(s) 690, 710
DrdI GACNNNNNNGTC 1 cut(s) 128
DriI GACNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 128
Eam1105I GACNNNNNGTC 1 cut(s) 236
EciI GGCGGA 2 cut(s) 415, 880
Eco130I CCWWGG 1 cut(s) 973
Eco147I AGGCCT 1 cut(s) 758
Eco47I GGWCC 3 cut(s) 230, 878, 942
Eco88I CYCGRG 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 973
ErhI CCWWGG 1 cut(s) 973
FaeI CATG 5 cut(s) 319, 398, 525, 827, 977
FaqI GGGAC 2 cut(s) 891, 928
FatI CATG 5 cut(s) 315, 394, 521, 823, 973
FauNDI CATATG 1 cut(s) 334
Fnu4HI GCNGC 7 cut(s) 64, 257, 313, 648, 775, 778, 796
FokI GGATG 3 cut(s) 518, 874, 951
Fsp4HI GCNGC 7 cut(s) 64, 257, 313, 648, 775, 778, 796
FspBI CTAG 3 cut(s) 86, 243, 363
GlaI GCGC 1 cut(s) 361
GluI GCNGC 7 cut(s) 64, 257, 313, 648, 775, 778, 796
GsaI CCCAGC 1 cut(s) 71
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 1 cut(s) 758
HapII CCGG 1 cut(s) 179
HgaI GACGC 1 cut(s) 148
HhaI GCGC 1 cut(s) 362
Hin1II CATG 5 cut(s) 319, 398, 525, 827, 977
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HinfI GANTC 9 cut(s) 107, 129, 193, 206, 225, 351, 694, 964, 1017
HpaII CCGG 1 cut(s) 179
HphI GGTGA 4 cut(s) 16, 593, 711, 935
Hpy166II GTNNAC 2 cut(s) 548, 790
Hpy188III TCNNGA 2 cut(s) 86, 490
Hpy8I GTNNAC 2 cut(s) 548, 790
Hpy99I CGWCG 4 cut(s) 31, 125, 142, 302
HpyAV CCTTC 2 cut(s) 409, 447
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 2 cut(s) 548, 897
HpyF10VI GCNNNNNNNGC 2 cut(s) 545, 774
HpyF3I CTNAG 2 cut(s) 690, 710
HpySE526I ACGT 1 cut(s) 673
Hsp92II CATG 5 cut(s) 319, 398, 525, 827, 977
HspAI GCGC 1 cut(s) 360
LmnI GCTCC 2 cut(s) 91, 514
Lsp1109I GCAGC 2 cut(s) 50, 659
LweI GCATC 1 cut(s) 526
MaeI CTAG 3 cut(s) 86, 243, 363
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 2 cut(s) 995, 1010
MbiI CCGCTC 1 cut(s) 325
MboII GAAGA 3 cut(s) 43, 496, 623
MflI RGATCY 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 550
MluCI AATT 8 cut(s) 53, 164, 344, 374, 584, 832, 852, 959
MlyI GAGTC 4 cut(s) 138, 234, 360, 1026
MmeI TCCRAC 6 cut(s) 112, 144, 208, 321, 786, 861
MseI TTAA 1 cut(s) 683
MslI CAYNNNNRTG 3 cut(s) 337, 972, 990
MspA1I CMGCKG 1 cut(s) 1035
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 1001
MwoI GCNNNNNNNGC 2 cut(s) 545, 774
NciI CCSGG 1 cut(s) 179
NcoI CCATGG 1 cut(s) 973
NdeI CATATG 1 cut(s) 334
NlaIII CATG 5 cut(s) 319, 398, 525, 827, 977
NlaIV GGNNCC 5 cut(s) 329, 404, 516, 879, 944
NspI RCATGY 1 cut(s) 319
PaeI GCATGC 1 cut(s) 319
PaeR7I CTCGAG 1 cut(s) 320
PceI AGGCCT 1 cut(s) 758
PfeI GAWTC 5 cut(s) 107, 193, 206, 694, 964
PflMI CCANNNNNTGG 2 cut(s) 659, 920
PkrI GCNGC 7 cut(s) 65, 258, 314, 649, 776, 779, 797
Ple19I CGATCG 2 cut(s) 127, 223
PleI GAGTC 4 cut(s) 137, 233, 359, 1025
PpsI GAGTC 4 cut(s) 137, 233, 359, 1025
PspFI CCCAGC 1 cut(s) 67
PspN4I GGNNCC 5 cut(s) 329, 404, 516, 879, 944
PspPI GGNCC 3 cut(s) 230, 878, 942
PspXI VCTCGAGB 1 cut(s) 320
PsuI RGATCY 1 cut(s) 402
PvuI CGATCG 2 cut(s) 127, 223
PvuII CAGCTG 1 cut(s) 1035
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
RseI CAYNNNNRTG 3 cut(s) 337, 972, 990
SaqAI TTAA 1 cut(s) 683
SatI GCNGC 7 cut(s) 64, 257, 313, 648, 775, 778, 796
Sau96I GGNCC 3 cut(s) 230, 878, 942
SchI GAGTC 4 cut(s) 138, 234, 360, 1026
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 1 cut(s) 550
SetI ASST 6 cut(s) 235, 547, 572, 676, 727, 1037
SfaNI GCATC 1 cut(s) 526
Sfr274I CTCGAG 1 cut(s) 320
SinI GGWCC 3 cut(s) 230, 878, 942
SlaI CTCGAG 1 cut(s) 320
SmiMI CAYNNNNRTG 3 cut(s) 337, 972, 990
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SphI GCATGC 1 cut(s) 319
Sse9I AATT 8 cut(s) 53, 164, 344, 374, 584, 832, 852, 959
SseBI AGGCCT 1 cut(s) 758
SspMI CTAG 3 cut(s) 86, 243, 363
StuI AGGCCT 1 cut(s) 758
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 973
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 1 cut(s) 676
TaqI TCGA 9 cut(s) 26, 127, 137, 147, 223, 321, 378, 428, 555
TasI AATT 8 cut(s) 53, 164, 344, 374, 584, 832, 852, 959
TauI GCSGC 5 cut(s) 259, 315, 777, 780, 798
TfiI GAWTC 5 cut(s) 107, 193, 206, 694, 964
Tru1I TTAA 1 cut(s) 683
Tru9I TTAA 1 cut(s) 683
TscAI CASTG 1 cut(s) 814
TseI GCWGC 2 cut(s) 63, 647
TspDTI ATGAA 7 cut(s) 89, 200, 351, 429, 573, 686, 812
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 1 cut(s) 814
Van91I CCANNNNNTGG 2 cut(s) 659, 920
VneI GTGCAC 1 cut(s) 546
VpaK11BI GGWCC 3 cut(s) 230, 878, 942
XapI RAATTY 2 cut(s) 374, 852
XbaI TCTAGA 1 cut(s) 85
XceI RCATGY 1 cut(s) 319
XhoI CTCGAG 1 cut(s) 320
XspI CTAG 3 cut(s) 86, 243, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.