Prupe.7G180600_v2.0.a1

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0021225
Physical Location & Seq
Reverse (-)
17679866 .. 17680678
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G180600.1

Sequence Viewer

Length: 813 bp
ATGAAGCGGATTCGTGGGATTGAATCCAAACCCTCCGATCGAGTCGGATCGACGCGGATCGGACAATATCAAACGGAAATCGGTTGTGTGACTCCTAGGCTTTTCTCAGAGGCGGTGCGGCGGATTGTAGAGGAGTATAGATGGATTAGATCCAATCCCTCCGACGATTTTGACTGCCGCATGCTCGAGCGGAACCCATATGAATGGCAATTTGGAATCAGAGGCGCTAGTGGAACTGAATTCGAGGGTGGGATTTATCATGGGCGGATCCAGTTTCCGAAGGAGTACCCATCGAAGCCTCCTTCATTCACGCTTTTGACGGAAAATGGTCGCTTCAAAACCCACAACAAGATCAGGATAAGGCGACTGAATGATTGGCAGCCATCATGGAGGGTGCGAGATGCTTTAGATGCACTTATCGATGAAATGCCCACCTACCCAGATGGTGAATTGGGCTCAGTAGAATACAATAAGGAAGAAAGGCGTGATCTAACCGTCAAATCTCATGCAGCAGCCCCAAAATATGGCACTTCTGAACGTCAGAAGTTAATTGATGAGATTCATGAATATCTGCTAAGCAAGTCACCACCTGTTCCTTTTCCTCAACTTCCTCAACTGATCCCCTCACAGGCCTCCAACGGCACTGGCGGCAGCTATGTCGTCAACGGCGGCTATGTCGTCAGTGGGAATACATTTCATGCTACCAATTCCAACGGGGTAGGAATTTTGGATTCTATGAATGCCTTCTCCGACGAAGACCACAAGCTTTTACCTTCTTGGCTAAAACTTTTTAGGTGGAGAAAGCAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 ko04141 ko05012 map04120 map04141 map05012
Pfam Domains
Protein Families
UQ_con

Protein Analysis

271

Amino Acids

30.98

Weight (kDa)

8.95

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 524
AccBSI CCGCTC 1 cut(s) 190
AccII CGCG 1 cut(s) 55
AclWI GGATC 6 cut(s) 55, 65, 144, 262, 275, 613
AcsI RAATTY 2 cut(s) 239, 723
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 2 cut(s) 524, 628
AgsI TTSAA 2 cut(s) 23, 337
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AluBI AGCT 2 cut(s) 654, 766
AluI AGCT 2 cut(s) 654, 766
AlwI GGATC 6 cut(s) 55, 65, 144, 262, 275, 613
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 1 cut(s) 630
ApeKI GCWGC 4 cut(s) 379, 509, 512, 651
ApoI RAATTY 2 cut(s) 239, 723
Asp700I GAANNNNTTC 1 cut(s) 743
AspA2I CCTAGG 1 cut(s) 95
AspLEI GCGC 1 cut(s) 227
AsuHPI GGTGA 2 cut(s) 458, 576
AvaI CYCGRG 1 cut(s) 185
AvrII CCTAGG 1 cut(s) 95
BamHI GGATCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 762
BbvI GCAGC 4 cut(s) 391, 521, 524, 663
BccI CCATC 4 cut(s) 135, 298, 391, 437
BceAI ACGGC 2 cut(s) 655, 682
BcgI CGANNNNNNTGC 2 cut(s) 640, 674
BfaI CTAG 3 cut(s) 96, 228, 811
BfoI RGCGCY 1 cut(s) 228
BisI GCNGC 8 cut(s) 119, 178, 380, 510, 513, 649, 652, 670
BlnI CCTAGG 1 cut(s) 95
BlpI GCTNAGC 1 cut(s) 575
BlsI GCNGC 8 cut(s) 120, 179, 381, 511, 514, 650, 653, 671
BmeT110I CYCGRG 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 194, 269
BmsI GCATC 2 cut(s) 391, 400
BpiI GAAGAC 1 cut(s) 762
Bpu1102I GCTNAGC 1 cut(s) 575
Bsa29I ATCGAT 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 2 cut(s) 524, 628
Bse1I ACTGG 2 cut(s) 271, 649
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 95
BseLI CCNNNNNNNGG 2 cut(s) 524, 628
BseMII CTCAG 2 cut(s) 120, 471
BseNI ACTGG 2 cut(s) 271, 649
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 4 cut(s) 391, 521, 524, 663
Bsh1236I CGCG 1 cut(s) 55
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 632
BshVI ATCGAT 1 cut(s) 420
BsiEI CGRYCG 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 185
BslI CCNNNNNNNGG 2 cut(s) 524, 628
BsmI GAATGC 1 cut(s) 745
BsnI GGCC 1 cut(s) 632
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 8 cut(s) 37, 47, 57, 149, 267, 351, 487, 618
Bsp1720I GCTNAGC 1 cut(s) 575
BspANI GGCC 1 cut(s) 632
BspCNI CTCAG 2 cut(s) 119, 470
BspDI ATCGAT 1 cut(s) 420
BspFNI CGCG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 2 cut(s) 194, 269
BspPI GGATC 6 cut(s) 55, 65, 144, 262, 275, 613
BsrBI CCGCTC 1 cut(s) 190
BsrI ACTGG 2 cut(s) 271, 649
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 8 cut(s) 37, 47, 57, 149, 267, 351, 487, 618
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 496
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 3 cut(s) 106, 457, 575
BstFNI CGCG 1 cut(s) 55
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 8 cut(s) 40, 50, 60, 152, 270, 354, 490, 621
BstMBI GATC 8 cut(s) 37, 47, 57, 149, 267, 351, 487, 618
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 410, 648
BstNSI RCATGY 1 cut(s) 184
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 4 cut(s) 391, 521, 524, 663
BstV2I GAAGAC 1 cut(s) 762
BstX2I RGATCY 2 cut(s) 149, 267
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 2 cut(s) 149, 267
Bsu15I ATCGAT 1 cut(s) 420
BsuRI GGCC 1 cut(s) 632
BsuTUI ATCGAT 1 cut(s) 420
BtsIMutI CAGTG 2 cut(s) 642, 688
Cac8I GCNNGC 1 cut(s) 182
CciI TCATGA 1 cut(s) 562
CfoI GCGC 1 cut(s) 227
ClaI ATCGAT 1 cut(s) 420
CseI GACGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 286
CviAII CATG 6 cut(s) 181, 260, 387, 506, 563, 698
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 3 cut(s) 106, 457, 575
DpnI GATC 8 cut(s) 39, 49, 59, 151, 269, 353, 489, 620
DpnII GATC 8 cut(s) 37, 47, 57, 149, 267, 351, 487, 618
EciI GGCGGA 2 cut(s) 136, 280
Eco130I CCWWGG 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 632
Eco24I GRGCYC 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 458
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 6 cut(s) 184, 263, 390, 509, 566, 701
FatI CATG 6 cut(s) 180, 259, 386, 505, 562, 697
FauNDI CATATG 1 cut(s) 199
Fnu4HI GCNGC 8 cut(s) 119, 178, 380, 510, 513, 649, 652, 670
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 8 cut(s) 119, 178, 380, 510, 513, 649, 652, 670
FspBI CTAG 3 cut(s) 96, 228, 811
GlaI GCGC 1 cut(s) 226
GluI GCNGC 8 cut(s) 119, 178, 380, 510, 513, 649, 652, 670
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 1 cut(s) 632
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 227
Hin1II CATG 6 cut(s) 184, 263, 390, 509, 566, 701
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 7 cut(s) 10, 23, 42, 91, 216, 559, 731
HphI GGTGA 2 cut(s) 458, 576
Hpy166II GTNNAC 1 cut(s) 664
Hpy188III TCNNGA 2 cut(s) 355, 563
Hpy8I GTNNAC 1 cut(s) 664
Hpy99I CGWCG 3 cut(s) 55, 167, 755
HpyAV CCTTC 4 cut(s) 274, 312, 754, 783
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4IV ACGT 1 cut(s) 538
HpyCH4V TGCA 2 cut(s) 413, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 648
HpyF3I CTNAG 3 cut(s) 106, 457, 575
HpySE526I ACGT 1 cut(s) 538
Hsp92II CATG 6 cut(s) 184, 263, 390, 509, 566, 701
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 8 cut(s) 37, 47, 57, 149, 267, 351, 487, 618
LpnPI CCDG 6 cut(s) 284, 340, 453, 603, 614, 630
Lsp1109I GCAGC 4 cut(s) 391, 521, 524, 663
LweI GCATC 2 cut(s) 391, 400
MaeI CTAG 3 cut(s) 96, 228, 811
MaeII ACGT 1 cut(s) 538
MaeIII GTNAC 2 cut(s) 88, 582
MalI GATC 8 cut(s) 39, 49, 59, 151, 269, 353, 489, 620
MbiI CCGCTC 1 cut(s) 190
MboI GATC 8 cut(s) 37, 47, 57, 149, 267, 351, 487, 618
MboII GAAGA 2 cut(s) 488, 767
MflI RGATCY 2 cut(s) 149, 267
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 6 cut(s) 209, 239, 449, 549, 706, 723
MlyI GAGTC 2 cut(s) 51, 85
MmeI TCCRAC 5 cut(s) 25, 186, 660, 735, 774
MroXI GAANNNNTTC 1 cut(s) 743
MseI TTAA 1 cut(s) 548
MslI CAYNNNNRTG 1 cut(s) 202
Mva1269I GAATGC 1 cut(s) 745
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 410, 648
NdeI CATATG 1 cut(s) 199
NdeII GATC 8 cut(s) 37, 47, 57, 149, 267, 351, 487, 618
NlaIII CATG 6 cut(s) 184, 263, 390, 509, 566, 701
NlaIV GGNNCC 2 cut(s) 194, 269
NmuCI GTSAC 2 cut(s) 88, 582
NspI RCATGY 1 cut(s) 184
PaeI GCATGC 1 cut(s) 184
PaeR7I CTCGAG 1 cut(s) 185
PagI TCATGA 1 cut(s) 562
PceI AGGCCT 1 cut(s) 632
PctI GAATGC 1 cut(s) 745
PdmI GAANNNNTTC 1 cut(s) 743
PfeI GAWTC 5 cut(s) 10, 23, 216, 559, 731
PflMI CCANNNNNTGG 1 cut(s) 524
PkrI GCNGC 8 cut(s) 120, 179, 381, 511, 514, 650, 653, 671
Ple19I CGATCG 1 cut(s) 40
PleI GAGTC 2 cut(s) 50, 85
PpsI GAGTC 2 cut(s) 50, 85
PspN4I GGNNCC 2 cut(s) 194, 269
PspXI VCTCGAGB 1 cut(s) 185
PsuI RGATCY 2 cut(s) 149, 267
PvuI CGATCG 1 cut(s) 40
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 202
SaqAI TTAA 1 cut(s) 548
SatI GCNGC 8 cut(s) 119, 178, 380, 510, 513, 649, 652, 670
Sau3AI GATC 8 cut(s) 37, 47, 57, 149, 267, 351, 487, 618
SchI GAGTC 2 cut(s) 51, 85
SduI GDGCHC 1 cut(s) 458
SetI ASST 7 cut(s) 437, 541, 592, 656, 768, 775, 797
SfaNI GCATC 2 cut(s) 391, 400
Sfr274I CTCGAG 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SphI GCATGC 1 cut(s) 184
Sse9I AATT 6 cut(s) 209, 239, 449, 549, 706, 723
SseBI AGGCCT 1 cut(s) 632
SspMI CTAG 3 cut(s) 96, 228, 811
StuI AGGCCT 1 cut(s) 632
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 496
TaiI ACGT 1 cut(s) 541
TaqI TCGA 6 cut(s) 40, 50, 186, 243, 293, 420
TasI AATT 6 cut(s) 209, 239, 449, 549, 706, 723
TauI GCSGC 4 cut(s) 121, 180, 651, 672
TfiI GAWTC 5 cut(s) 10, 23, 216, 559, 731
Tru1I TTAA 1 cut(s) 548
Tru9I TTAA 1 cut(s) 548
TscAI CASTG 2 cut(s) 649, 688
TseFI GTSAC 2 cut(s) 88, 582
TseI GCWGC 4 cut(s) 379, 509, 512, 651
Tsp45I GTSAC 2 cut(s) 88, 582
TspDTI ATGAA 8 cut(s) 17, 216, 294, 438, 551, 579, 686, 752
TspGWI ACGGA 2 cut(s) 89, 335
TspRI CASTG 2 cut(s) 649, 688
Van91I CCANNNNNTGG 1 cut(s) 524
XapI RAATTY 2 cut(s) 239, 723
XceI RCATGY 1 cut(s) 184
XhoI CTCGAG 1 cut(s) 185
XmaJI CCTAGG 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 743
XspI CTAG 3 cut(s) 96, 228, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.