Prupe.7G187700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0017964
Physical Location & Seq
Reverse (-)
18081512 .. 18081928
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G187700.1

Sequence Viewer

Length: 417 bp
ATGGGCCACATGAACTACAACAGAGTTGGAAATGGCAGAGGAAGCAGAGGTTTCAGGCTAAACCCAAGAAGATTTTCAGTCTCGAGGCTCCTACGTGCCCGGTTCGTGTGCTTGTTCAGGTTCTTGAGATGTTCATATGGGCAAGCTTTGCAGTCTCTAAAGAAAGGCATGAGCAGAAGTAGCAGGCCAAGTGCTGGCTCTGGCCCTAGCAATATCAAGAGGAACAACAGCAGCTCAAGAAGGATTTTGGTCACAGAAACACACCAAAACAAGGCACGGTCAGAACCAGCTGATTACTGCAGGTTGAGATCATTTGCACGGTCCAACTCCTTTTATGCAGAAGCCATTGCTGATTGCTTGGAGTTCATCAAAAGGTCTTCTATTTCTCTTGATCAAAACCCAGTCAACCAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.74

Weight (kDa)

11.6

Isoelectric Point (pI)

79.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017964)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09950
prunus_persica Prupe.7G187700_v2.0.a1
pyrus_communis pycom02g08680
rosa_chinensis RchiOBHm_Chr2g0096741
rosa_laevigata RLG00000016666
rosa_roxburghii Rroxscaffold_2G00145360
rosa_rugosa Rorug02G0060400
rosa_samantha Rh2AG107600 Rh2BG110000 Rh2CG111900 Rh2DG111300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 291
AccB7I CCANNNNNTGG 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 194, 271
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AluBI AGCT 3 cut(s) 146, 234, 290
AluI AGCT 3 cut(s) 146, 234, 290
Alw26I GTCTC 2 cut(s) 85, 159
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 3 cut(s) 4, 185, 202
ApeKI GCWGC 1 cut(s) 231
Asp700I GAANNNNTTC 1 cut(s) 73
AspS9I GGNCC 3 cut(s) 4, 203, 321
AsuC2I CCSGG 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 1 cut(s) 321
BaeGI GKGCMC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 243
BclI TGATCA 1 cut(s) 391
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 2 cut(s) 85, 159
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 298
BfuAI ACCTGC 1 cut(s) 291
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 321
BmeT110I CYCGRG 1 cut(s) 82
BmgT120I GGNCC 3 cut(s) 4, 203, 321
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 100
BmrI ACTGGG 1 cut(s) 395
BmuI ACTGGG 1 cut(s) 395
BpiI GAAGAC 1 cut(s) 369
BpuEI CTTGAG 2 cut(s) 145, 220
BpuMI CCSGG 1 cut(s) 100
BsaAI YACGTR 1 cut(s) 95
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 271
Bse1I ACTGG 1 cut(s) 401
Bse3DI GCAATG 1 cut(s) 345
BseLI CCNNNNNNNGG 2 cut(s) 194, 271
BseMI GCAATG 1 cut(s) 345
BseNI ACTGG 1 cut(s) 401
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 1 cut(s) 243
BshFI GGCC 3 cut(s) 6, 187, 204
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 1 cut(s) 100
BslI CCNNNNNNNGG 2 cut(s) 194, 271
BsmAI GTCTC 2 cut(s) 85, 159
BsnI GGCC 3 cut(s) 6, 187, 204
BsoBI CYCGRG 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 100
Bsp143I GATC 2 cut(s) 308, 391
BspANI GGCC 3 cut(s) 6, 187, 204
BspLI GGNNCC 1 cut(s) 89
BspMAI CTGCAG 1 cut(s) 302
BspMI ACCTGC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 345
BsrI ACTGG 1 cut(s) 401
BssMI GATC 2 cut(s) 308, 391
Bst4CI ACNGT 2 cut(s) 279, 321
BstAPI GCANNNNNTGC 1 cut(s) 148
BstBAI YACGTR 1 cut(s) 95
BstC8I GCNNGC 3 cut(s) 144, 185, 196
BstKTI GATC 2 cut(s) 311, 394
BstMAI GTCTC 2 cut(s) 85, 159
BstMBI GATC 2 cut(s) 308, 391
BstMWI GCNNNNNNNGC 3 cut(s) 42, 148, 180
BstSCI CCNGG 1 cut(s) 98
BstSFI CTRYAG 1 cut(s) 298
BstSLI GKGCMC 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 243
BstV2I GAAGAC 1 cut(s) 369
BsuRI GGCC 3 cut(s) 6, 187, 204
BveI ACCTGC 1 cut(s) 291
Cac8I GCNNGC 3 cut(s) 144, 185, 196
Cfr13I GGNCC 3 cut(s) 4, 203, 321
CviAII CATG 2 cut(s) 10, 169
DpnI GATC 2 cut(s) 310, 393
DpnII GATC 2 cut(s) 308, 391
Eco47I GGWCC 1 cut(s) 321
Eco88I CYCGRG 1 cut(s) 82
FaeI CATG 2 cut(s) 13, 172
FaiI YATR 5 cut(s) 11, 136, 138, 170, 336
FatI CATG 2 cut(s) 9, 168
FauNDI CATATG 1 cut(s) 136
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 1 cut(s) 207
GluI GCNGC 1 cut(s) 232
HaeIII GGCC 3 cut(s) 6, 187, 204
HapII CCGG 1 cut(s) 100
Hin1II CATG 2 cut(s) 13, 172
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 144
HpaII CCGG 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 5 cut(s) 82, 124, 217, 237, 389
Hpy8I GTNNAC 1 cut(s) 406
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 2 cut(s) 279, 321
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 4 cut(s) 151, 300, 317, 338
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 148, 180
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 2 cut(s) 13, 172
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 2 cut(s) 308, 391
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 8 cut(s) 40, 103, 113, 169, 180, 186, 286, 300
Lsp1109I GCAGC 1 cut(s) 243
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 250
MalI GATC 2 cut(s) 310, 393
MboI GATC 2 cut(s) 308, 391
MboII GAAGA 2 cut(s) 81, 369
MhlI GDGCHC 1 cut(s) 100
MmeI TCCRAC 2 cut(s) 7, 348
MnlI CCTC 4 cut(s) 32, 41, 78, 213
MroXI GAANNNNTTC 1 cut(s) 73
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 1 cut(s) 100
MwoI GCNNNNNNNGC 3 cut(s) 42, 148, 180
NciI CCSGG 1 cut(s) 100
NdeI CATATG 1 cut(s) 136
NdeII GATC 2 cut(s) 308, 391
NlaIII CATG 2 cut(s) 13, 172
NlaIV GGNNCC 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 250
PaeR7I CTCGAG 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 194
PkrI GCNGC 1 cut(s) 233
Ppu21I YACGTR 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 3 cut(s) 4, 203, 321
PstI CTGCAG 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 290
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 2 cut(s) 308, 391
Sau96I GGNCC 3 cut(s) 4, 203, 321
ScrFI CCNGG 1 cut(s) 100
SduI GDGCHC 1 cut(s) 100
SetI ASST 8 cut(s) 52, 97, 122, 148, 236, 292, 305, 377
SfcI CTRYAG 1 cut(s) 298
Sfr274I CTCGAG 1 cut(s) 82
SinI GGWCC 1 cut(s) 321
SlaI CTCGAG 1 cut(s) 82
SmlI CTYRAG 3 cut(s) 82, 124, 235
SmoI CTYRAG 3 cut(s) 82, 124, 235
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 98
TaaI ACNGT 2 cut(s) 279, 321
TaiI ACGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 83
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 231
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 26, 123, 355
Van91I CCANNNNNTGG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 321
XhoI CTCGAG 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.