Rh2CG111900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017964
Physical Location & Seq
Forward (+)
9840338 .. 9841278
941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG111900.1

Sequence Viewer

Length: 360 bp
ATGGGTCACATGAGCTACAACAGAGTTGGGAATGTTAGGGCAAACAGAGGATTCAGGCTAAACCCGAGAAGATTTTCGGTCTCCAGACTGCGCACGAGGTTCTTGTGCTTCTTCAAGTTCTTGAGCAGATGGAGATGCTCATGCATGAGAAGAGCTAGTACTACAAGTTCTAATGGAAGCAGCAGTAGCAGAGGTTTGGTCAGAAAGAAGTTACAAAACAAGGGTAGTCGAGTTGATTGTGGAAGATTGAGATCATATGGAAGGTCGAATTCTTTTTATGCAGAAGCCATTGCTGATTGCTTGGAGTTCATCAAGAGGTCTTCTATTTCTGTGGATCAGAAAAGTAAAACAACCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.72

Weight (kDa)

11.66

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017964)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09950
prunus_persica Prupe.7G187700_v2.0.a1
pyrus_communis pycom02g08680
rosa_chinensis RchiOBHm_Chr2g0096741
rosa_laevigata RLG00000016666
rosa_roxburghii Rroxscaffold_2G00145360
rosa_rugosa Rorug02G0060400
rosa_samantha Rh2AG107600 Rh2BG110000 Rh2CG111900 Rh2DG111300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 92
AclWI GGATC 1 cut(s) 342
AcsI RAATTY 1 cut(s) 268
AfaI GTAC 1 cut(s) 160
AgsI TTSAA 1 cut(s) 115
AluBI AGCT 2 cut(s) 15, 155
AluI AGCT 2 cut(s) 15, 155
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 1 cut(s) 342
Ama87I CYCGRG 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 180
ApoI RAATTY 1 cut(s) 268
Asp700I GAANNNNTTC 1 cut(s) 73
AspLEI GCGC 1 cut(s) 93
AvaI CYCGRG 1 cut(s) 64
BarI GAAGNNNNNNTAC 2 cut(s) 142, 174
BauI CACGAG 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 192
BccI CCATC 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
BmcAI AGTACT 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 125
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 250
BsaI GGTCTC 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 355
Bse3DI GCAATG 1 cut(s) 288
Bse8I GATNNNNATC 1 cut(s) 250
BseJI GATNNNNATC 1 cut(s) 250
BseMI GCAATG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 355
BseXI GCAGC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 85
Bso31I GGTCTC 1 cut(s) 85
BsoBI CYCGRG 1 cut(s) 64
Bsp143I GATC 2 cut(s) 251, 334
BspPI GGATC 1 cut(s) 342
BspQI GCTCTTC 1 cut(s) 145
BspTNI GGTCTC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 1 cut(s) 355
BssMI GATC 2 cut(s) 251, 334
BssSI CACGAG 1 cut(s) 94
Bst2BI CACGAG 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 145
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 2 cut(s) 254, 337
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 2 cut(s) 251, 334
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 312
CfoI GCGC 1 cut(s) 93
Csp6I GTAC 1 cut(s) 159
CviAII CATG 3 cut(s) 10, 141, 145
CviJI RGCY 4 cut(s) 15, 58, 155, 287
CviKI_1 RGCY 4 cut(s) 15, 58, 155, 287
CviQI GTAC 1 cut(s) 159
DpnI GATC 2 cut(s) 253, 336
DpnII GATC 2 cut(s) 251, 334
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 268
EcoT22I ATGCAT 1 cut(s) 146
FaeI CATG 3 cut(s) 13, 144, 148
FaiI YATR 6 cut(s) 11, 142, 146, 256, 258, 279
FatI CATG 3 cut(s) 9, 140, 144
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 181
FspBI CTAG 1 cut(s) 156
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 181
GsuI CTGGAG 1 cut(s) 67
HhaI GCGC 1 cut(s) 93
Hin1II CATG 3 cut(s) 13, 144, 148
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 203, 339
Hpy188III TCNNGA 3 cut(s) 84, 121, 313
HpyAV CCTTC 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 144, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
Hsp92II CATG 3 cut(s) 13, 144, 148
HspAI GCGC 1 cut(s) 91
Kzo9I GATC 2 cut(s) 251, 334
LguI GCTCTTC 1 cut(s) 145
LpnPI CCDG 2 cut(s) 40, 97
Lsp1109I GCAGC 1 cut(s) 192
LweI GCATC 1 cut(s) 125
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 5, 210
MalI GATC 2 cut(s) 253, 336
MboI GATC 2 cut(s) 251, 334
MboII GAAGA 5 cut(s) 81, 103, 162, 255, 312
MluCI AATT 1 cut(s) 268
MnlI CCTC 4 cut(s) 41, 90, 185, 309
Mph1103I ATGCAT 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 73
MwoI GCNNNNNNNGC 1 cut(s) 186
NdeI CATATG 1 cut(s) 256
NdeII GATC 2 cut(s) 251, 334
NlaIII CATG 3 cut(s) 13, 144, 148
NmuCI GTSAC 1 cut(s) 5
NsbI TGCGCA 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 51
PkrI GCNGC 1 cut(s) 182
PsrI GAACNNNNNNTAC 2 cut(s) 151, 183
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 145
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 2 cut(s) 251, 334
ScaI AGTACT 1 cut(s) 160
SetI ASST 6 cut(s) 17, 101, 157, 196, 266, 320
SfaNI GCATC 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
Sse9I AATT 1 cut(s) 268
SspMI CTAG 1 cut(s) 156
TaqI TCGA 2 cut(s) 229, 266
TaqII GACCGA 1 cut(s) 67
TasI AATT 1 cut(s) 268
TatI WGTACW 1 cut(s) 158
TfiI GAWTC 1 cut(s) 51
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 180
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 298
XapI RAATTY 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 160
Zsp2I ATGCAT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.