Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0016935

Physical Location & Seq

Genomic Coordinates Reverse (-)

18116375 .. 18117178

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G188300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCTTCTCATCAAACCCCTGAAACGCCTGCTGAACACAAGCTTCCTGTAACTGATCATGAAAACTACAAGACAAGGACTGAACAAGTGCAGAGAGCTCAGTGGCTTAGAGCTGCCATCCTTGGAGCAAGTGATGGATTGCTATCAACTACGTCGCTAATGCTTGGTGTTGGCGCAGTGAAGGAAGATCGTTGGTCGATGATCCTATCGGGCATAGCTGGAGCTATTGCAGGAGCTTGTAGCATGGCTGTGGGAGAGTTTGTTTCAGTTTCAACACAAAGAGATATTGAAAAGACTTCTCTAAGACAACAAAGCAGTTTAAATACTGAGTTGGGTAAGGAAGATATCAAGGGTAAGGTCAAGCTAGACATCCCTGAAAGATCAAACTTGACCATTTCAATTGAACTGACTCCTTCAAGAACAATCTCATGTGGAAAATCAACGTGTGATCATCCACCAGAGAAAATATTACCAACTATTGAGATCATAGAAAATGATGGAGGGAAAGAGTCATTGCCAAGTCCACAAAAGGCAGCATCTGCATCAGCTTTGGCATTTCTGTGTGGCTCACTTTTGCCTTTAATCTCAGCCATATTTATTGCTCATAGTACTGTGAGAATGGTGGTGGTTGTGGTGGTGGCTTCAATAGCTCTGGCTCTCTTCGGCAGTATGGGAGCACGTTTCGGTGGCTCACCGGCCATGCCGTCTGCAGTTAGAGTTTTAATTGGAGGGTGGATTGCCATGGCAATAACTTATAGCTTGCTCATGCCATTTGAAAAAGAAAATCGTAATGAAAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

268

Amino Acids

28.47

Weight (kDa)

6.54

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016935)

Species	Orthologous Gene IDs
malus_domestica	MD15G1227000.v1.1
prunus_persica	Prupe.7G188300_v2.0.a1
pyrus_communis	pycom02g08630
rosa_chinensis	RchiOBHm_Chr2g0096671
rosa_laevigata	RLG00000016660
rosa_multiflora	Rmu_sc0003565.1_g000019 Rmu_sc0003565.1_g000020
rosa_roxburghii	Rroxscaffold_2G00145430
rosa_rugosa	Rorug02G0059500
rosa_samantha	Rh2AG106900 Rh2BG109300 Rh2CG111100 Rh2DG110700
rosa_wichuraiana	Rw2G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	696
AfaI	GTAC	1 cut(s)	610
AflIII	ACRYGT	1 cut(s)	443
AgsI	TTSAA	7 cut(s)	273, 290, 399, 404, 417, 645, 776
Alw21I	GWGCWC	2 cut(s)	100, 679
AlwI	GGATC	1 cut(s)	196
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	1 cut(s)	696
ApeKI	GCWGC	2 cut(s)	113, 533
AspLEI	GCGC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	684
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	2 cut(s)	100, 679
BbvI	GCAGC	2 cut(s)	100, 545
BccI	CCATC	3 cut(s)	125, 128, 491
BceAI	ACGGC	1 cut(s)	688
BclI	TGATCA	2 cut(s)	55, 448
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	708
BisI	GCNGC	2 cut(s)	114, 534
BlsI	GCNGC	2 cut(s)	115, 535
BmcAI	AGTACT	1 cut(s)	610
BmsI	GCATC	2 cut(s)	545, 551
BpmI	CTGGAG	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	121, 741
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bse118I	RCCGGY	1 cut(s)	694
Bse3DI	GCAATG	1 cut(s)	512
Bse8I	GATNNNNATC	1 cut(s)	142
BseDI	CCNNGG	2 cut(s)	121, 741
BseGI	GGATG	3 cut(s)	117, 369, 451
BseJI	GATNNNNATC	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	3 cut(s)	113, 318, 600
BseXI	GCAGC	2 cut(s)	100, 545
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	698
BsiHKAI	GWGCWC	2 cut(s)	100, 679
BsiSI	CCGG	1 cut(s)	695
BsnI	GGCC	1 cut(s)	698
Bsp1286I	GDGCHC	2 cut(s)	100, 679
Bsp143I	GATC	6 cut(s)	55, 187, 201, 380, 448, 483
Bsp19I	CCATGG	1 cut(s)	741
BspANI	GGCC	1 cut(s)	698
BspCNI	CTCAG	3 cut(s)	112, 319, 599
BspHI	TCATGA	1 cut(s)	58
BspMAI	CTGCAG	1 cut(s)	712
BspPI	GGATC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	512
BsrFI	RCCGGY	1 cut(s)	694
BssAI	RCCGGY	1 cut(s)	694
BssECI	CCNNGG	2 cut(s)	121, 741
BssMI	GATC	6 cut(s)	55, 187, 201, 380, 448, 483
BssT1I	CCWWGG	2 cut(s)	121, 741
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	1 cut(s)	665
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	30, 761
BstDEI	CTNAG	5 cut(s)	99, 107, 302, 327, 586
BstDSI	CCRYGG	1 cut(s)	741
BstF5I	GGATG	3 cut(s)	117, 369, 451
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	6 cut(s)	58, 190, 204, 383, 451, 486
BstMBI	GATC	6 cut(s)	55, 187, 201, 380, 448, 483
BstMWI	GCNNNNNNNGC	2 cut(s)	539, 647
BstSFI	CTRYAG	1 cut(s)	708
BstV1I	GCAGC	2 cut(s)	100, 545
BsuRI	GGCC	1 cut(s)	698
BtgI	CCRYGG	1 cut(s)	741
BtsCI	GGATG	3 cut(s)	117, 369, 451
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	107, 183
Cac8I	GCNNGC	2 cut(s)	30, 761
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	1 cut(s)	58
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	694
Csp6I	GTAC	1 cut(s)	609
CviAII	CATG	6 cut(s)	59, 244, 429, 700, 742, 766
CviQI	GTAC	1 cut(s)	609
DdeI	CTNAG	5 cut(s)	99, 107, 302, 327, 586
DpnI	GATC	6 cut(s)	57, 189, 203, 382, 450, 485
DpnII	GATC	6 cut(s)	55, 187, 201, 380, 448, 483
DraI	TTTAAA	1 cut(s)	321
EaeI	YGGCCR	1 cut(s)	696
Eam1104I	CTCTTC	1 cut(s)	665
EarI	CTCTTC	1 cut(s)	665
Ecl136II	GAGCTC	1 cut(s)	98
Eco130I	CCWWGG	2 cut(s)	121, 741
Eco24I	GRGCYC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	346
Eco53kI	GAGCTC	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	98
EcoRV	GATATC	1 cut(s)	346
EcoT14I	CCWWGG	2 cut(s)	121, 741
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	2 cut(s)	121, 741
FaeI	CATG	6 cut(s)	62, 247, 432, 703, 745, 769
FatI	CATG	6 cut(s)	58, 243, 428, 699, 741, 765
FbaI	TGATCA	2 cut(s)	55, 448
Fnu4HI	GCNGC	2 cut(s)	114, 534
FokI	GGATG	3 cut(s)	104, 356, 438
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	2 cut(s)	114, 534
FspBI	CTAG	1 cut(s)	365
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	2 cut(s)	114, 534
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	698
HapII	CCGG	1 cut(s)	695
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	6 cut(s)	62, 247, 432, 703, 745, 769
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	2 cut(s)	409, 509
HpaII	CCGG	1 cut(s)	695
HphI	GGTGA	1 cut(s)	684
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188III	TCNNGA	2 cut(s)	59, 417
Hpy8I	GTNNAC	1 cut(s)	524
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	175, 423
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	3 cut(s)	152, 443, 679
HpyCH4V	TGCA	4 cut(s)	91, 230, 542, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	539, 647
HpyF3I	CTNAG	5 cut(s)	99, 107, 302, 327, 586
HpySE526I	ACGT	3 cut(s)	152, 443, 679
Hsp92II	CATG	6 cut(s)	62, 247, 432, 703, 745, 769
HspAI	GCGC	1 cut(s)	174
Ksp22I	TGATCA	2 cut(s)	55, 448
Kzo9I	GATC	6 cut(s)	55, 187, 201, 380, 448, 483
LmnI	GCTCC	4 cut(s)	125, 221, 233, 674
LpnPI	CCDG	9 cut(s)	33, 42, 60, 204, 216, 387, 471, 638, 708
Lsp1109I	GCAGC	2 cut(s)	100, 545
LweI	GCATC	2 cut(s)	545, 551
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	3 cut(s)	152, 443, 679
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	6 cut(s)	57, 189, 203, 382, 450, 485
MboI	GATC	6 cut(s)	55, 187, 201, 380, 448, 483
MboII	GAAGA	3 cut(s)	197, 353, 652
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	2 cut(s)	100, 679
MluCI	AATT	2 cut(s)	399, 723
MlyI	GAGTC	2 cut(s)	403, 518
MnlI	CCTC	2 cut(s)	494, 722
MseI	TTAA	3 cut(s)	320, 581, 722
MslI	CAYNNNNRTG	2 cut(s)	248, 559
MspI	CCGG	1 cut(s)	695
MunI	CAATTG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	539, 647
NcoI	CCATGG	1 cut(s)	741
NdeII	GATC	6 cut(s)	55, 187, 201, 380, 448, 483
NlaIII	CATG	6 cut(s)	62, 247, 432, 703, 745, 769
PagI	TCATGA	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	115, 535
PleI	GAGTC	2 cut(s)	403, 517
PpsI	GAGTC	2 cut(s)	403, 517
Psp124BI	GAGCTC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	712
PstNI	CAGNNNCTG	1 cut(s)	539
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
RseI	CAYNNNNRTG	2 cut(s)	248, 559
SacI	GAGCTC	1 cut(s)	100
SaqAI	TTAA	3 cut(s)	320, 581, 722
SatI	GCNGC	2 cut(s)	114, 534
Sau3AI	GATC	6 cut(s)	55, 187, 201, 380, 448, 483
ScaI	AGTACT	1 cut(s)	610
SchI	GAGTC	2 cut(s)	403, 518
SduI	GDGCHC	2 cut(s)	100, 679
SfaNI	GCATC	2 cut(s)	545, 551
SfcI	CTRYAG	1 cut(s)	708
SmiMI	CAYNNNNRTG	2 cut(s)	248, 559
Sse9I	AATT	2 cut(s)	399, 723
SspI	AATATT	1 cut(s)	468
SspMI	CTAG	1 cut(s)	365
SstI	GAGCTC	1 cut(s)	100
StyI	CCWWGG	2 cut(s)	121, 741
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	3 cut(s)	155, 446, 682
TaqI	TCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	399, 723
TatI	WGTACW	1 cut(s)	608
Tru1I	TTAA	3 cut(s)	320, 581, 722
Tru9I	TTAA	3 cut(s)	320, 581, 722
TscAI	CASTG	2 cut(s)	107, 183
TseI	GCWGC	2 cut(s)	113, 533
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	2 cut(s)	107, 183
XspI	CTAG	1 cut(s)	365
ZrmI	AGTACT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.