Prupe.7G221300_v2.0.a1

GRF zinc finger containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0021154
Physical Location & Seq
Reverse (-)
19784393 .. 19787370
2978 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G221300.1

Sequence Viewer

Length: 993 bp
ATGAATAATCAGAGCAATTTGAAACGCAGTTGCATAGAGATGGCGGATGCCGCCGATCATCTCTCTTCACCTATCAACCACTTTCACAGCAGCAGTAGCAATGACATGGTCGAGCCACAGACGGCCATGGCCGACGATGCTTGTATACAACCACAACCACAACTGCAGCAGCAGCAGCAGCAACAGCACATTGCTCTGCCTCCGTTGGTGGAGGATTTGCTGAACCAACTTTGTAATGAGAGAAAGCAACCCCAGCCAGACTACAACGTCAGGCGGAGGTTGGGTTTGCTGGGCGAGGAGAAGGCCCTCCAACTCCTCCATGAAATCAACGAGGCAAAAGTAATCAAAACCCTCAGTGGCTTCATCATGTGGATGATCCGTAATAAACCACAATATCAATGTCCCTCTCCTTCTCCCTCTCCTTCAAAGTATTGCCCTGCTTCTCTTCTGCAAACCCAATTGTCCGCTTCTCCATTTACGCCTTCTGTTCGCAAAGAGCAACCTGGACGAGACCACGGAGGGCTGAGGCCACGTTATTCCTATTCCTCTGCCTCACCTTCAAAAGCTCTCCGTGTTTCTCCGTATCAAGGCCCATCATATGCTCCTCCTTCTACTATTACTCCTGTTCAACTTTTTAAGGACACTCTGCCTCTACCTCTACCTTTTACTCAAGATTTTATTTTTTTTTTCACTTTGTCAATTTCATGCTTTTCATTTATTGTGATTAATTATCCGTCGATAGCCCAAACAAGAAAAGATATTATGTCTCTGTTCGAGTCTGCGTGTGTTGGTGAGACTCTCACTAATTCCTCAGTTCTAGTAATGAACGTGTTTATAACCTTTACTTTGATGAAGTATACACAACTAGCTCTTCTAAATGTGTACTTTTGTTTCCCTCTTTTCGGCCGAAGCGGCCAACGGAAGGAACTTTTGATCATTCTTCTCTTGAGTGTGGGGCGTGCCACCACAACCACCACCACCACCAAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-GRF

Protein Analysis

331

Amino Acids

37.0

Weight (kDa)

8.86

Isoelectric Point (pI)

69.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021154)

Species Orthologous Gene IDs
malus_domestica MD02G1064500.v1.1 MD02G1064700.v1.1 MD15G1195200.v1.1
prunus_persica Prupe.7G221300_v2.0.a1
pyrus_communis pycom02g05080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 836
AasI GACNNNNNNGTC 1 cut(s) 266
AccI GTMKAC 2 cut(s) 145, 857
AciI CCGC 5 cut(s) 44, 51, 274, 465, 912
AclWI GGATC 1 cut(s) 370
AcoI YGGCCR 4 cut(s) 123, 129, 904, 913
AfaI GTAC 1 cut(s) 884
AfiI CCNNNNNNNGG 3 cut(s) 587, 902, 922
AflIII ACRYGT 1 cut(s) 828
AgsI TTSAA 4 cut(s) 22, 426, 561, 629
AjnI CCWGG 1 cut(s) 502
AluBI AGCT 2 cut(s) 566, 869
AluI AGCT 2 cut(s) 566, 869
Alw26I GTCTC 3 cut(s) 504, 771, 788
AlwI GGATC 1 cut(s) 370
AoxI GGCC 7 cut(s) 123, 129, 303, 527, 589, 904, 913
ApeKI GCWGC 6 cut(s) 90, 166, 169, 172, 175, 178
AseI ATTAAT 1 cut(s) 726
AspS9I GGNCC 2 cut(s) 304, 590
AsuHPI GGTGA 3 cut(s) 60, 546, 803
BbvCI CCTCAGC 1 cut(s) 524
BbvI GCAGC 6 cut(s) 102, 178, 181, 184, 187, 190
BccI CCATC 2 cut(s) 34, 601
BceAI ACGGC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 504
BclI TGATCA 1 cut(s) 933
BcoDI GTCTC 3 cut(s) 504, 771, 788
BfaI CTAG 2 cut(s) 818, 866
BfmI CTRYAG 1 cut(s) 164
BglI GCCNNNNNGGC 1 cut(s) 912
BisI GCNGC 8 cut(s) 51, 91, 167, 170, 173, 176, 179, 913
BlsI GCNGC 8 cut(s) 52, 92, 168, 171, 174, 177, 180, 914
Bme1390I CCNGG 1 cut(s) 504
BmgT120I GGNCC 2 cut(s) 304, 590
BmrFI CCNGG 1 cut(s) 504
BmsI GCATC 2 cut(s) 37, 127
Bpu10I CCTNAGC 1 cut(s) 524
BpuEI CTTGAG 2 cut(s) 654, 967
BsaI GGTCTC 1 cut(s) 504
BsaJI CCNNGG 2 cut(s) 126, 514
BsaXI ACNNNNNCTCC 4 cut(s) 268, 298, 604, 634
Bsc4I CCNNNNNNNGG 3 cut(s) 587, 902, 922
Bse3DI GCAATG 2 cut(s) 106, 189
BseBI CCWGG 1 cut(s) 504
BseDI CCNNGG 2 cut(s) 126, 514
BseGI GGATG 2 cut(s) 52, 378
BseLI CCNNNNNNNGG 3 cut(s) 587, 902, 922
BseMI GCAATG 2 cut(s) 106, 189
BseMII CTCAG 3 cut(s) 367, 515, 825
BseRI GAGGAG 3 cut(s) 305, 311, 594
BseX3I CGGCCG 1 cut(s) 904
BseXI GCAGC 6 cut(s) 102, 178, 181, 184, 187, 190
BseYI CCCAGC 2 cut(s) 252, 289
Bsh1285I CGRYCG 1 cut(s) 907
BshFI GGCC 7 cut(s) 125, 131, 305, 529, 591, 906, 915
BsiEI CGRYCG 1 cut(s) 907
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 3 cut(s) 587, 902, 922
BsmAI GTCTC 3 cut(s) 504, 771, 788
BsmFI GGGAC 1 cut(s) 387
BsnI GGCC 7 cut(s) 125, 131, 305, 529, 591, 906, 915
Bso31I GGTCTC 1 cut(s) 504
Bsp143I GATC 3 cut(s) 55, 375, 933
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 5 cut(s) 44, 51, 274, 465, 912
BspANI GGCC 7 cut(s) 125, 131, 305, 529, 591, 906, 915
BspCNI CTCAG 3 cut(s) 366, 516, 824
BspMAI CTGCAG 1 cut(s) 168
BspPI GGATC 1 cut(s) 370
BspQI GCTCTTC 1 cut(s) 876
BspTNI GGTCTC 1 cut(s) 504
BsrDI GCAATG 2 cut(s) 106, 189
BssECI CCNNGG 2 cut(s) 126, 514
BssMI GATC 3 cut(s) 55, 375, 933
BssNAI GTATAC 2 cut(s) 146, 858
BssT1I CCWWGG 1 cut(s) 126
Bst1107I GTATAC 2 cut(s) 146, 858
Bst2UI CCWGG 1 cut(s) 504
Bst6I CTCTTC 3 cut(s) 70, 450, 876
BstC8I GCNNGC 1 cut(s) 960
BstDEI CTNAG 3 cut(s) 353, 524, 811
BstDSI CCRYGG 2 cut(s) 126, 514
BstF5I GGATG 2 cut(s) 52, 378
BstKTI GATC 3 cut(s) 58, 378, 936
BstMAI GTCTC 3 cut(s) 504, 771, 788
BstMBI GATC 3 cut(s) 55, 375, 933
BstMCI CGRYCG 1 cut(s) 907
BstMWI GCNNNNNNNGC 9 cut(s) 50, 96, 137, 172, 175, 178, 184, 253, 912
BstNI CCWGG 1 cut(s) 504
BstSCI CCNGG 1 cut(s) 502
BstSFI CTRYAG 1 cut(s) 164
BstV1I GCAGC 6 cut(s) 102, 178, 181, 184, 187, 190
BstZ17I GTATAC 2 cut(s) 146, 858
BstZI CGGCCG 1 cut(s) 904
BsuRI GGCC 7 cut(s) 125, 131, 305, 529, 591, 906, 915
BtgI CCRYGG 2 cut(s) 126, 514
BtsCI GGATG 2 cut(s) 52, 378
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 960
Cfr13I GGNCC 2 cut(s) 304, 590
Csp6I GTAC 1 cut(s) 883
CviAII CATG 5 cut(s) 106, 127, 320, 367, 705
CviQI GTAC 1 cut(s) 883
DdeI CTNAG 3 cut(s) 353, 524, 811
DpnI GATC 3 cut(s) 57, 377, 935
DpnII GATC 3 cut(s) 55, 375, 933
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 4 cut(s) 123, 129, 904, 913
EagI CGGCCG 1 cut(s) 904
Eam1104I CTCTTC 3 cut(s) 70, 450, 876
EarI CTCTTC 3 cut(s) 70, 450, 876
EciI GGCGGA 2 cut(s) 59, 289
EclXI CGGCCG 1 cut(s) 904
Eco130I CCWWGG 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 504
Eco52I CGGCCG 1 cut(s) 904
EcoO109I RGGNCCY 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 502
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 5 cut(s) 109, 130, 323, 370, 708
FaqI GGGAC 1 cut(s) 387
FatI CATG 5 cut(s) 105, 126, 319, 366, 704
FauNDI CATATG 1 cut(s) 598
FbaI TGATCA 1 cut(s) 933
FblI GTMKAC 2 cut(s) 145, 857
Fnu4HI GCNGC 8 cut(s) 51, 91, 167, 170, 173, 176, 179, 913
FokI GGATG 2 cut(s) 59, 385
Fsp4HI GCNGC 8 cut(s) 51, 91, 167, 170, 173, 176, 179, 913
FspBI CTAG 2 cut(s) 818, 866
GluI GCNGC 8 cut(s) 51, 91, 167, 170, 173, 176, 179, 913
GsaI CCCAGC 2 cut(s) 256, 293
HaeIII GGCC 7 cut(s) 125, 131, 305, 529, 591, 906, 915
Hin1II CATG 5 cut(s) 109, 130, 323, 370, 708
HinfI GANTC 2 cut(s) 776, 796
HphI GGTGA 3 cut(s) 60, 546, 803
Hpy166II GTNNAC 3 cut(s) 146, 858, 883
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 2 cut(s) 671, 946
Hpy8I GTNNAC 3 cut(s) 146, 858, 883
Hpy99I CGWCG 2 cut(s) 137, 739
HpyAV CCTTC 7 cut(s) 295, 420, 432, 492, 567, 618, 916
HpyCH4IV ACGT 3 cut(s) 267, 532, 828
HpyCH4V TGCA 3 cut(s) 33, 166, 451
HpyF10VI GCNNNNNNNGC 9 cut(s) 50, 96, 137, 172, 175, 178, 184, 253, 912
HpyF3I CTNAG 3 cut(s) 353, 524, 811
HpySE526I ACGT 3 cut(s) 267, 532, 828
Hsp92II CATG 5 cut(s) 109, 130, 323, 370, 708
Ksp22I TGATCA 1 cut(s) 933
Kzo9I GATC 3 cut(s) 55, 375, 933
LguI GCTCTTC 1 cut(s) 876
LmnI GCTCC 1 cut(s) 607
LpnPI CCDG 8 cut(s) 256, 266, 270, 275, 450, 489, 516, 636
Lsp1109I GCAGC 6 cut(s) 102, 178, 181, 184, 187, 190
LweI GCATC 2 cut(s) 37, 127
MaeI CTAG 2 cut(s) 818, 866
MaeII ACGT 3 cut(s) 267, 532, 828
MalI GATC 3 cut(s) 57, 377, 935
MboI GATC 3 cut(s) 55, 375, 933
MboII GAAGA 4 cut(s) 57, 437, 863, 932
MfeI CAATTG 1 cut(s) 458
MluCI AATT 5 cut(s) 16, 458, 699, 727, 805
MlyI GAGTC 2 cut(s) 785, 790
MmeI TCCRAC 1 cut(s) 334
MseI TTAA 2 cut(s) 636, 726
MslI CAYNNNNRTG 2 cut(s) 38, 371
MspR9I CCNGG 1 cut(s) 504
MunI CAATTG 1 cut(s) 458
MvaI CCWGG 1 cut(s) 504
MwoI GCNNNNNNNGC 9 cut(s) 50, 96, 137, 172, 175, 178, 184, 253, 912
NcoI CCATGG 1 cut(s) 126
NdeI CATATG 1 cut(s) 598
NdeII GATC 3 cut(s) 55, 375, 933
NlaIII CATG 5 cut(s) 109, 130, 323, 370, 708
PciSI GCTCTTC 1 cut(s) 876
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 8 cut(s) 52, 92, 168, 171, 174, 177, 180, 914
PleI GAGTC 2 cut(s) 784, 790
PpsI GAGTC 2 cut(s) 784, 790
PshBI ATTAAT 1 cut(s) 726
PsiI TTATAA 1 cut(s) 836
Psp6I CCWGG 1 cut(s) 502
PspFI CCCAGC 2 cut(s) 252, 289
PspGI CCWGG 1 cut(s) 502
PspPI GGNCC 2 cut(s) 304, 590
PstI CTGCAG 1 cut(s) 168
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 1 cut(s) 884
RsaNI GTAC 1 cut(s) 883
RseI CAYNNNNRTG 2 cut(s) 38, 371
SapI GCTCTTC 1 cut(s) 876
SaqAI TTAA 2 cut(s) 636, 726
SatI GCNGC 8 cut(s) 51, 91, 167, 170, 173, 176, 179, 913
Sau3AI GATC 3 cut(s) 55, 375, 933
Sau96I GGNCC 2 cut(s) 304, 590
SchI GAGTC 2 cut(s) 785, 790
ScrFI CCNGG 1 cut(s) 504
SfaNI GCATC 2 cut(s) 37, 127
SfcI CTRYAG 1 cut(s) 164
SfiI GGCCNNNNNGGCC 1 cut(s) 912
SmiMI CAYNNNNRTG 2 cut(s) 38, 371
SmlI CTYRAG 2 cut(s) 669, 946
SmoI CTYRAG 2 cut(s) 669, 946
Sse9I AATT 5 cut(s) 16, 458, 699, 727, 805
SsiI CCGC 5 cut(s) 44, 51, 274, 465, 912
SspMI CTAG 2 cut(s) 818, 866
StyD4I CCNGG 1 cut(s) 502
StyI CCWWGG 1 cut(s) 126
TaiI ACGT 3 cut(s) 270, 535, 831
TaqI TCGA 3 cut(s) 111, 737, 774
TasI AATT 5 cut(s) 16, 458, 699, 727, 805
TatI WGTACW 1 cut(s) 882
TauI GCSGC 2 cut(s) 53, 915
Tru1I TTAA 2 cut(s) 636, 726
Tru9I TTAA 2 cut(s) 636, 726
TscAI CASTG 1 cut(s) 361
TseI GCWGC 6 cut(s) 90, 166, 169, 172, 175, 178
TspDTI ATGAA 7 cut(s) 17, 336, 352, 693, 702, 839, 866
TspGWI ACGGA 7 cut(s) 192, 368, 531, 560, 570, 723, 934
TspRI CASTG 1 cut(s) 361
Tth111I GACNNNGTC 1 cut(s) 107
VspI ATTAAT 1 cut(s) 726
XmiI GTMKAC 2 cut(s) 145, 857
XspI CTAG 2 cut(s) 818, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.