Prupe.8G068400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
10066309 .. 10067089
781 bp
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UTR
Exon/CDS
Intron
Prupe.8G068400.1

Sequence Viewer

Length: 366 bp
ATGGAGGGAATTGTAGTAGGGATCCCTGAGGGGAAGTTTGGCAATGGAGGCAATGTAACCTTAGGGATAGTTGGCATAGTGGGGAAACTTGGCAGTGGAGGCAGCTGTGTTGTAGGTTTAGGCAGCGATGGCTGGTTGGTTGGCAAGTTTGGTAAAGTGGGTTGTGGCAGTGTTGGGAGAGGAGGTAAAGGTGGTAGTGTTGAAGCAGGTTTAGGCAACGTCGGTACAGCCGTCTGCAAAAGATTACGCCCCGCTACGGTGACATGGATGCTGGATGAGCACAAGATAACGAAGATAGCTAGGAAGCAGTACTTGCAAGAGGCCATTGGTTCAAGCTATAGCTCTCTCAAAAAGATTTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

12.29

Weight (kDa)

9.8

Isoelectric Point (pI)

12.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022457)

Species Orthologous Gene IDs
prunus_persica Prupe.8G068400_v2.0.a1
pyrus_communis pycom05g03880 pycom05g03890 pycom10g04090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 197
AciI CCGC 1 cut(s) 252
AclWI GGATC 2 cut(s) 16, 29
AfaI GTAC 2 cut(s) 226, 311
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 2 cut(s) 203, 333
AluBI AGCT 4 cut(s) 105, 299, 336, 342
AluI AGCT 4 cut(s) 105, 299, 336, 342
Alw21I GWGCWC 1 cut(s) 282
AlwI GGATC 2 cut(s) 16, 29
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 2 cut(s) 102, 123
AsuHPI GGTGA 1 cut(s) 271
AxyI CCTNAGG 2 cut(s) 27, 61
BaeI ACNNNNGTAYC 2 cut(s) 216, 249
BamHI GGATCC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 114, 135
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 215
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 337
BfuAI ACCTGC 1 cut(s) 197
BisI GCNGC 2 cut(s) 103, 124
BlsI GCNGC 2 cut(s) 104, 125
BmcAI AGTACT 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 23
BmsI GCATC 1 cut(s) 258
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 169, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse21I CCTNAGG 2 cut(s) 27, 61
Bse3DI GCAATG 2 cut(s) 49, 58
BseGI GGATG 2 cut(s) 273, 280
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 2 cut(s) 49, 58
BseMII CTCAG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 195
BseXI GCAGC 2 cut(s) 114, 135
BshFI GGCC 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 256
BsnI GGCC 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 1 cut(s) 252
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 23
BspMI ACCTGC 1 cut(s) 197
BspPI GGATC 2 cut(s) 16, 29
BsrDI GCAATG 2 cut(s) 49, 58
BssMI GATC 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 259
BstAPI GCANNNNNTGC 1 cut(s) 313
BstDEI CTNAG 2 cut(s) 27, 61
BstF5I GGATG 2 cut(s) 273, 280
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 5 cut(s) 48, 99, 129, 277, 313
BstSFI CTRYAG 1 cut(s) 337
BstV1I GCAGC 2 cut(s) 114, 135
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
Bsu36I CCTNAGG 2 cut(s) 27, 61
BsuRI GGCC 1 cut(s) 323
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 2 cut(s) 273, 280
BtsI GCAGTG 2 cut(s) 100, 175
BtsIMutI CAGTG 2 cut(s) 100, 175
BveI ACCTGC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 225, 310
CviAII CATG 1 cut(s) 264
CviJI RGCY 7 cut(s) 105, 132, 230, 299, 323, 336, 342
CviKI_1 RGCY 7 cut(s) 105, 132, 230, 299, 323, 336, 342
CviQI GTAC 2 cut(s) 225, 310
DdeI CTNAG 2 cut(s) 27, 61
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eco81I CCTNAGG 2 cut(s) 27, 61
FaeI CATG 1 cut(s) 267
FaiI YATR 3 cut(s) 77, 265, 339
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FatI CATG 1 cut(s) 263
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 103, 124
FokI GGATG 2 cut(s) 280, 287
Fsp4HI GCNGC 2 cut(s) 103, 124
FspBI CTAG 1 cut(s) 300
GluI GCNGC 2 cut(s) 103, 124
HaeIII GGCC 1 cut(s) 323
Hin1II CATG 1 cut(s) 267
HphI GGTGA 1 cut(s) 271
Hpy99I CGWCG 1 cut(s) 224
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 2 cut(s) 237, 316
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 99, 129, 277, 313
HpyF3I CTNAG 2 cut(s) 27, 61
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 1 cut(s) 267
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 4 cut(s) 39, 118, 192, 257
Lsp1109I GCAGC 2 cut(s) 114, 135
LweI GCATC 1 cut(s) 258
MaeI CTAG 1 cut(s) 300
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 55, 259
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 1 cut(s) 304
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 1 cut(s) 9
MnlI CCTC 6 cut(s) 22, 41, 92, 173, 176, 313
MspA1I CMGCKG 1 cut(s) 105
MwoI GCNNNNNNNGC 5 cut(s) 48, 99, 129, 277, 313
NdeII GATC 1 cut(s) 21
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 1 cut(s) 23
NmuCI GTSAC 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PkrI GCNGC 2 cut(s) 104, 125
PspN4I GGNNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 105
RsaI GTAC 2 cut(s) 226, 311
RsaNI GTAC 2 cut(s) 225, 310
SatI GCNGC 2 cut(s) 103, 124
Sau3AI GATC 1 cut(s) 21
ScaI AGTACT 1 cut(s) 311
SduI GDGCHC 1 cut(s) 282
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 1 cut(s) 337
Sse9I AATT 1 cut(s) 9
SsiI CCGC 1 cut(s) 252
SspMI CTAG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 222
TasI AATT 1 cut(s) 9
TatI WGTACW 1 cut(s) 309
TscAI CASTG 2 cut(s) 100, 175
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 2 cut(s) 102, 123
Tsp45I GTSAC 1 cut(s) 259
TspRI CASTG 2 cut(s) 100, 175
XspI CTAG 1 cut(s) 300
ZrmI AGTACT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.