pycom05g03880

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
4445295 .. 4445606
312 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g03880.1

Sequence Viewer

Length: 312 bp
ATGTGCCAACATATATGCATGATTTACGGTTTACCGGTTGCAGGTGGTGGAGAGAAAAATGGGAAAGAGGGAATTGTAGTAGGGATATTGGTTGGGAGTACCGAGGGAAAATTTGGCAGTGGAGGCAGTGTAACCTTAGGGATATTTGGGAATGACGTAGTAGGGAAATTGGGAAGTGGAGGCAGCTGTGTCTGTGTGGAGCCGCCGCCGGTGGGCATAGGTAGAGACGGTAGGTTGTTTGGTATGTTTGGCAATGTGGGTTGTGGGAATGTTGGCAGGGGAGGGAAAGGTGGTAGTGTTGAAGCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

9.94

Weight (kDa)

7.61

Isoelectric Point (pI)

19.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022457)

Species Orthologous Gene IDs
prunus_persica Prupe.8G068400_v2.0.a1
pyrus_communis pycom05g03880 pycom05g03890 pycom10g04090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 32
Acc36I ACCTGC 2 cut(s) 32, 296
AciI CCGC 2 cut(s) 203, 206
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 41, 212
AgeI ACCGGT 1 cut(s) 34
AgsI TTSAA 1 cut(s) 302
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 110
AsiGI ACCGGT 1 cut(s) 34
AxyI CCTNAGG 1 cut(s) 136
BbvI GCAGC 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 219
BfuAI ACCTGC 2 cut(s) 32, 296
BisI GCNGC 3 cut(s) 184, 203, 206
BlsI GCNGC 3 cut(s) 185, 204, 207
BmiI GGNNCC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 212
Bse118I RCCGGY 2 cut(s) 34, 208
Bse21I CCTNAGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 41, 212
BseMI GCAATG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 195
BshTI ACCGGT 1 cut(s) 34
BsiSI CCGG 2 cut(s) 35, 209
BslI CCNNNNNNNGG 2 cut(s) 41, 212
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
BspACI CCGC 2 cut(s) 203, 206
BspLI GGNNCC 1 cut(s) 201
BspMI ACCTGC 2 cut(s) 32, 296
BsrDI GCAATG 1 cut(s) 259
BsrFI RCCGGY 2 cut(s) 34, 208
BssAI RCCGGY 2 cut(s) 34, 208
BssECI CCNNGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 29, 230
BstDEI CTNAG 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 219
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 195
Bsu36I CCTNAGG 1 cut(s) 136
BtsI GCAGTG 2 cut(s) 124, 133
BtsIMutI CAGTG 2 cut(s) 124, 133
BveI ACCTGC 2 cut(s) 32, 296
Cfr10I RCCGGY 2 cut(s) 34, 208
Csp6I GTAC 1 cut(s) 99
CspAI ACCGGT 1 cut(s) 34
CviAII CATG 1 cut(s) 19
CviJI RGCY 2 cut(s) 186, 202
CviKI_1 RGCY 2 cut(s) 186, 202
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 1 cut(s) 136
Eco81I CCTNAGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 20
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 1 cut(s) 22
FaiI YATR 6 cut(s) 12, 14, 16, 20, 218, 245
FatI CATG 1 cut(s) 18
Fnu4HI GCNGC 3 cut(s) 184, 203, 206
Fsp4HI GCNGC 3 cut(s) 184, 203, 206
GluI GCNGC 3 cut(s) 184, 203, 206
HapII CCGG 2 cut(s) 35, 209
Hin1II CATG 1 cut(s) 22
HpaII CCGG 2 cut(s) 35, 209
Hpy166II GTNNAC 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 32
HpyCH4III ACNGT 2 cut(s) 29, 230
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 18, 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 1 cut(s) 22
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 5 cut(s) 27, 48, 222, 262, 291
Lsp1109I GCAGC 1 cut(s) 195
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 130
MluCI AATT 3 cut(s) 72, 110, 167
MnlI CCTC 5 cut(s) 61, 97, 116, 173, 275
Mph1103I ATGCAT 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 186
MspI CCGG 2 cut(s) 35, 209
MwoI GCNNNNNNNGC 1 cut(s) 123
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 201
NsiI ATGCAT 1 cut(s) 20
PaqCI CACCTGC 1 cut(s) 32
PinAI ACCGGT 1 cut(s) 34
PkrI GCNGC 3 cut(s) 185, 204, 207
PspN4I GGNNCC 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 186
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SatI GCNGC 3 cut(s) 184, 203, 206
SetI ASST 8 cut(s) 46, 137, 159, 188, 223, 236, 292, 310
SgeI CNNG 6 cut(s) 31, 47, 54, 115, 221, 289
SgrAI CRCCGGYG 1 cut(s) 208
Sse9I AATT 3 cut(s) 72, 110, 167
SsiI CCGC 2 cut(s) 203, 206
TaaI ACNGT 2 cut(s) 29, 230
TaiI ACGT 1 cut(s) 159
TasI AATT 3 cut(s) 72, 110, 167
TauI GCSGC 2 cut(s) 205, 208
TscAI CASTG 2 cut(s) 124, 133
TseI GCWGC 1 cut(s) 183
TspRI CASTG 2 cut(s) 124, 133
XapI RAATTY 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.