pycom05g03890

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
4490951 .. 4491367
417 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g03890.1

Sequence Viewer

Length: 417 bp
ATGTGCCAACATATATGCATGATTTACGGTTTGCCGGTTGCAGGTGGTGGAGAGAAAAATGGGAAAGAGGGAATTGTAGTAGGGATATTGGTTGGGAGTACTGAGGGAACGTTTGGCAGCGGAGGTAGTGTAACCTTAGGGATATTTGGGAATGACGTGGTAGGGAAATTGGGAAGTGGAGGCAGCTGTGTCTGTGTGGAGCCGCCGCCGGTGGGCATAGGTAGAGATGGTAGGTTGTTTGGTATGTTTGGCAATGTGGGTTGTGGGAATGTTGGCAGGGGAGGGAAAGGTGGTAGTGTTGAAGCAGGTTTAGGCAAAGACGGTGCAGTCGTCGTCTGGAGAAGATTGCGAGCAGCTACGGAGACATGGATGCTTGAAGAAAACAGGACAATGAACAAGACAGCAGATAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

13.97

Weight (kDa)

8.68

Isoelectric Point (pI)

27.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022457)

Species Orthologous Gene IDs
prunus_persica Prupe.8G068400_v2.0.a1
pyrus_communis pycom05g03880 pycom05g03890 pycom10g04090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 32
AasI GACNNNNNNGTC 1 cut(s) 326
Acc36I ACCTGC 2 cut(s) 32, 296
AciI CCGC 3 cut(s) 120, 203, 206
AclI AACGTT 1 cut(s) 110
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 41, 212
AgsI TTSAA 2 cut(s) 302, 377
AjiI CACGTC 1 cut(s) 157
AluBI AGCT 2 cut(s) 186, 356
AluI AGCT 2 cut(s) 186, 356
Alw26I GTCTC 1 cut(s) 356
ApeKI GCWGC 3 cut(s) 117, 183, 353
AxyI CCTNAGG 1 cut(s) 136
BbvI GCAGC 3 cut(s) 129, 195, 365
BccI CCATC 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 356
BfuAI ACCTGC 2 cut(s) 32, 296
BisI GCNGC 5 cut(s) 118, 184, 203, 206, 354
BlsI GCNGC 5 cut(s) 119, 185, 204, 207, 355
BmcAI AGTACT 1 cut(s) 100
BmgBI CACGTC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 201
BmsI GCATC 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 358
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 212
Bse118I RCCGGY 2 cut(s) 34, 208
Bse21I CCTNAGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 259
BseGI GGATG 1 cut(s) 375
BseLI CCNNNNNNNGG 2 cut(s) 41, 212
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 93
BseXI GCAGC 3 cut(s) 129, 195, 365
BsgI GTGCAG 1 cut(s) 345
BsiSI CCGG 2 cut(s) 35, 209
BslI CCNNNNNNNGG 2 cut(s) 41, 212
BsmAI GTCTC 1 cut(s) 356
BspACI CCGC 3 cut(s) 120, 203, 206
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 201
BspMI ACCTGC 2 cut(s) 32, 296
BsrDI GCAATG 1 cut(s) 259
BsrFI RCCGGY 2 cut(s) 34, 208
BssAI RCCGGY 2 cut(s) 34, 208
Bst4CI ACNGT 2 cut(s) 29, 323
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 102, 136
BstF5I GGATG 1 cut(s) 375
BstMAI GTCTC 1 cut(s) 356
BstV1I GCAGC 3 cut(s) 129, 195, 365
Bsu36I CCTNAGG 1 cut(s) 136
BtrI CACGTC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 375
BveI ACCTGC 2 cut(s) 32, 296
Cac8I GCNNGC 1 cut(s) 351
Cfr10I RCCGGY 2 cut(s) 34, 208
Csp6I GTAC 1 cut(s) 99
CviAII CATG 2 cut(s) 19, 366
CviJI RGCY 3 cut(s) 186, 202, 356
CviKI_1 RGCY 3 cut(s) 186, 202, 356
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 2 cut(s) 102, 136
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
Eco81I CCTNAGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 20
FaeI CATG 2 cut(s) 22, 369
FaiI YATR 7 cut(s) 12, 14, 16, 20, 218, 245, 367
FatI CATG 2 cut(s) 18, 365
Fnu4HI GCNGC 5 cut(s) 118, 184, 203, 206, 354
FokI GGATG 1 cut(s) 382
Fsp4HI GCNGC 5 cut(s) 118, 184, 203, 206, 354
GluI GCNGC 5 cut(s) 118, 184, 203, 206, 354
GsuI CTGGAG 1 cut(s) 358
HapII CCGG 2 cut(s) 35, 209
Hin1II CATG 2 cut(s) 22, 369
HpaII CCGG 2 cut(s) 35, 209
Hpy188III TCNNGA 1 cut(s) 337
Hpy99I CGWCG 1 cut(s) 335
HpyCH4III ACNGT 2 cut(s) 29, 323
HpyCH4IV ACGT 2 cut(s) 110, 156
HpyCH4V TGCA 3 cut(s) 18, 41, 326
HpyF3I CTNAG 2 cut(s) 102, 136
HpySE526I ACGT 2 cut(s) 110, 156
Hsp92II CATG 2 cut(s) 22, 369
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 7 cut(s) 27, 48, 222, 262, 291, 322, 370
Lsp1109I GCAGC 3 cut(s) 129, 195, 365
LweI GCATC 1 cut(s) 360
MaeII ACGT 2 cut(s) 110, 156
MaeIII GTNAC 1 cut(s) 130
MboII GAAGA 2 cut(s) 354, 389
MluCI AATT 2 cut(s) 72, 167
MnlI CCTC 5 cut(s) 61, 97, 116, 173, 275
Mph1103I ATGCAT 1 cut(s) 20
MspA1I CMGCKG 2 cut(s) 120, 186
MspI CCGG 2 cut(s) 35, 209
NlaIII CATG 2 cut(s) 22, 369
NlaIV GGNNCC 1 cut(s) 201
NsiI ATGCAT 1 cut(s) 20
PaqCI CACCTGC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PkrI GCNGC 5 cut(s) 119, 185, 204, 207, 355
Psp1406I AACGTT 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 186
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SatI GCNGC 5 cut(s) 118, 184, 203, 206, 354
ScaI AGTACT 1 cut(s) 100
SfaNI GCATC 1 cut(s) 360
SgrAI CRCCGGYG 1 cut(s) 208
Sse9I AATT 2 cut(s) 72, 167
SsiI CCGC 3 cut(s) 120, 203, 206
TaaI ACNGT 2 cut(s) 29, 323
TaiI ACGT 2 cut(s) 113, 159
TasI AATT 2 cut(s) 72, 167
TatI WGTACW 1 cut(s) 98
TauI GCSGC 2 cut(s) 205, 208
TseI GCWGC 3 cut(s) 117, 183, 353
TspDTI ATGAA 1 cut(s) 407
TspGWI ACGGA 1 cut(s) 374
ZrmI AGTACT 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.