Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009411

Physical Location & Seq

Genomic Coordinates Forward (+)

13775970 .. 13778299

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G106600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAATGCCCCAGATCGATACGAAAGATTTGTTGTCCCTGAAGGCACCAAAAAGGTGTCATATGAGAGGGACACAAAGATCATAAACGCAGCATCCTTTACAATTGAGAGAGAGGACCACACCATTGGAAACATCCTCCGCATGCAGTTGCACAGGGATGAGAATGTTCTATTTGCGGGTTACAAGCTTCCTCACCCCCTTCAGTACAAGATTATTGTCAGGATTCACACCACCAGCCAGTCTTCACCAATGCAGGCATATAACCAGGCTATTAATGATCTTGACAAGGAACTGGACCATTTAAAGAGTTGTTTTGAGGCTGAGGTGGCAAAGCATTCAGTGGAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_L_2

Protein Analysis

117

Amino Acids

13.51

Weight (kDa)

6.29

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52090 AT3G52090
fragaria_vesca	FvH4_2g07830
malus_domestica	MD05G1071600.v1.1 MD10G1083600.v1.1
prunus_persica	Prupe.8G106600_v2.0.a1 Prupe.8G106600_v2.0.a1
pyrus_communis	pycom05g06170 pycom10g06570
rosa_chinensis	RchiOBHm_Chr6g0262241
rosa_multiflora	Rmu_sc0002510.1_g000027 Rmu_sc0010083.1_g000004
rosa_roxburghii	Rroxscaffold_7G00207930
rosa_rugosa	Rorug05G0595600 Rorug05G0595700 Rorug05G0595700
rosa_samantha	Rh2AG296400 Rh2DG320300 Rh6AG115800 Rh6BG110100 Rh6DG098100
rosa_wichuraiana	Rw6G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	44
AciI	CCGC	2 cut(s)	139, 176
AcuI	CTGAAG	2 cut(s)	60, 185
AfaI	GTAC	2 cut(s)	206, 347
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	89
AseI	ATTAAT	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	115, 295
AsuHPI	GGTGA	2 cut(s)	185, 237
AvaII	GGWCC	2 cut(s)	115, 295
BanI	GGYRCC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	234
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	266
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	2 cut(s)	115, 295
BmgT120I	GGNCC	2 cut(s)	115, 295
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	321
Bsa29I	ATCGAT	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	238, 297
BseBI	CCWGG	1 cut(s)	266
BseCI	ATCGAT	1 cut(s)	16
BseGI	GGATG	3 cut(s)	92, 132, 163
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	238, 297
BseXI	GCAGC	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	44
BshVI	ATCGAT	1 cut(s)	16
BslFI	GGGAC	2 cut(s)	20, 83
BsmFI	GGGAC	2 cut(s)	20, 83
BsmI	GAATGC	2 cut(s)	10, 334
Bsp143I	GATC	3 cut(s)	13, 78, 277
BspACI	CCGC	2 cut(s)	139, 176
BspCNI	CTCAG	1 cut(s)	313
BspDI	ATCGAT	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	238, 297
BssMI	GATC	3 cut(s)	13, 78, 277
Bst2UI	CCWGG	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	143, 255
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	3 cut(s)	92, 132, 163
BstKTI	GATC	3 cut(s)	16, 81, 280
BstMBI	GATC	3 cut(s)	13, 78, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	234
BstXI	CCANNNNNNTGG	1 cut(s)	125
Bsu15I	ATCGAT	1 cut(s)	16
BsuTUI	ATCGAT	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	92, 132, 163
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	143, 255
Cfr13I	GGNCC	2 cut(s)	115, 295
ClaI	ATCGAT	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	205, 346
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	4 cut(s)	187, 237, 269, 320
CviKI_1	RGCY	4 cut(s)	187, 237, 269, 320
CviQI	GTAC	2 cut(s)	205, 346
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	3 cut(s)	15, 80, 279
DpnII	GATC	3 cut(s)	13, 78, 277
DraI	TTTAAA	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	115, 295
Eco57I	CTGAAG	2 cut(s)	60, 185
EcoRII	CCWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	145
FaiI	YATR	6 cut(s)	61, 63, 83, 143, 259, 261
FaqI	GGGAC	2 cut(s)	20, 83
FatI	CATG	1 cut(s)	141
FauI	CCCGC	1 cut(s)	169
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	3 cut(s)	79, 119, 170
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	223
HphI	GGTGA	2 cut(s)	185, 237
Hpy188III	TCNNGA	2 cut(s)	220, 281
HpyAV	CCTTC	2 cut(s)	35, 209
HpyCH4V	TGCA	3 cut(s)	145, 151, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	13, 78, 277
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	3 cut(s)	15, 80, 279
MboI	GATC	3 cut(s)	13, 78, 277
MboII	GAAGA	1 cut(s)	234
MfeI	CAATTG	1 cut(s)	102
MluCI	AATT	1 cut(s)	102
MnlI	CCTC	6 cut(s)	60, 106, 146, 201, 310, 316
MseI	TTAA	2 cut(s)	273, 302
MslI	CAYNNNNRTG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	266
MunI	CAATTG	1 cut(s)	102
Mva1269I	GAATGC	2 cut(s)	10, 334
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	3 cut(s)	13, 78, 277
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	145
PaeI	GCATGC	1 cut(s)	145
PctI	GAATGC	2 cut(s)	10, 334
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	91
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	2 cut(s)	115, 295
RsaI	GTAC	2 cut(s)	206, 347
RsaNI	GTAC	2 cut(s)	205, 346
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	273, 302
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	3 cut(s)	13, 78, 277
Sau96I	GGNCC	2 cut(s)	115, 295
ScaI	AGTACT	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	266
SetI	ASST	3 cut(s)	57, 189, 327
SfaNI	GCATC	1 cut(s)	101
SinI	GGWCC	2 cut(s)	115, 295
SmiMI	CAYNNNNRTG	1 cut(s)	156
SphI	GCATGC	1 cut(s)	145
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	2 cut(s)	139, 176
StyD4I	CCNGG	1 cut(s)	264
TaqI	TCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	102
TatI	WGTACW	2 cut(s)	204, 345
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	273, 302
Tru9I	TTAA	2 cut(s)	273, 302
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	345
VpaK11BI	GGWCC	2 cut(s)	115, 295
VspI	ATTAAT	1 cut(s)	273
XceI	RCATGY	1 cut(s)	145
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.