Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009411

Physical Location & Seq

Genomic Coordinates Reverse (-)

8073915 .. 8074647

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g06170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAATGCCCCAGACCGATATGAACGGTTTGTTGTTCCAGAGGGAACAAAAAAGGTGTCGTACGAGAGGGACACGAAGATCATAAATGCAGCATCATTTACAATTGAGAGAGAGGACCACACCATCGGCAACATCCTCCGCATGCAGCTACACAGGGATGAGAATGTTTTGTTTGCTGGCTACAAGCTTCCTCACCCTCTTCAGTACAAGATTATTGTCAGGATTCACACAAGCAGCCAGTCTTCACCAATGCAGGCATACAACCAGGCTATTAATGATCTTGACAAGGAACTTGATCATTTGAAGAATGGTTTTGAGGTATTGCTTTTTGATGCTTCTCCTTCTCAACGCTTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_L_2

Protein Analysis

120

Amino Acids

13.8

Weight (kDa)

6.51

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52090 AT3G52090
fragaria_vesca	FvH4_2g07830
malus_domestica	MD05G1071600.v1.1 MD10G1083600.v1.1
prunus_persica	Prupe.8G106600_v2.0.a1 Prupe.8G106600_v2.0.a1
pyrus_communis	pycom05g06170 pycom10g06570
rosa_chinensis	RchiOBHm_Chr6g0262241
rosa_multiflora	Rmu_sc0002510.1_g000027 Rmu_sc0010083.1_g000004
rosa_roxburghii	Rroxscaffold_7G00207930
rosa_rugosa	Rorug05G0595600 Rorug05G0595700 Rorug05G0595700
rosa_samantha	Rh2AG296400 Rh2DG320300 Rh6AG115800 Rh6BG110100 Rh6DG098100
rosa_wichuraiana	Rw6G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	185
AfaI	GTAC	2 cut(s)	62, 206
AgsI	TTSAA	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	2 cut(s)	148, 187
AluI	AGCT	2 cut(s)	148, 187
ApeKI	GCWGC	3 cut(s)	89, 145, 234
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AseI	ATTAAT	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	185, 237
AvaII	GGWCC	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	101, 157, 246
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	1 cut(s)	295
BisI	GCNGC	3 cut(s)	90, 146, 235
BlsI	GCNGC	3 cut(s)	91, 147, 236
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	2 cut(s)	101, 322
BpiI	GAAGAC	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	266
BseGI	GGATG	2 cut(s)	132, 163
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	101, 157, 246
BsiWI	CGTACG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	78, 277, 295
BspACI	CCGC	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	238
BssMI	GATC	3 cut(s)	78, 277, 295
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	4 cut(s)	143, 178, 255, 353
BstF5I	GGATG	2 cut(s)	132, 163
BstKTI	GATC	3 cut(s)	81, 280, 298
BstMBI	GATC	3 cut(s)	78, 277, 295
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	264
BstV1I	GCAGC	3 cut(s)	101, 157, 246
BstV2I	GAAGAC	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	132, 163
Cac8I	GCNNGC	4 cut(s)	143, 178, 255, 353
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	61, 205
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	5 cut(s)	148, 180, 187, 237, 269
CviKI_1	RGCY	5 cut(s)	148, 180, 187, 237, 269
CviQI	GTAC	2 cut(s)	61, 205
DpnI	GATC	3 cut(s)	80, 279, 297
DpnII	GATC	3 cut(s)	78, 277, 295
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	145
FaiI	YATR	4 cut(s)	21, 83, 143, 259
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	1 cut(s)	141
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	3 cut(s)	90, 146, 235
FokI	GGATG	2 cut(s)	119, 170
Fsp4HI	GCNGC	3 cut(s)	90, 146, 235
GluI	GCNGC	3 cut(s)	90, 146, 235
Hin1II	CATG	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	223
HphI	GGTGA	2 cut(s)	185, 237
Hpy188III	TCNNGA	3 cut(s)	38, 220, 281
HpyAV	CCTTC	1 cut(s)	351
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	3 cut(s)	89, 145, 253
Hsp92II	CATG	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	78, 277, 295
LpnPI	CCDG	9 cut(s)	24, 51, 139, 162, 205, 239, 251, 251, 278
Lsp1109I	GCAGC	3 cut(s)	101, 157, 246
LweI	GCATC	2 cut(s)	101, 322
MalI	GATC	3 cut(s)	80, 279, 297
MboI	GATC	3 cut(s)	78, 277, 295
MboII	GAAGA	4 cut(s)	88, 191, 234, 316
MfeI	CAATTG	1 cut(s)	102
MluCI	AATT	1 cut(s)	102
MnlI	CCTC	7 cut(s)	34, 60, 106, 146, 201, 207, 310
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	266
MunI	CAATTG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	266
NdeII	GATC	3 cut(s)	78, 277, 295
NlaIII	CATG	1 cut(s)	145
NspI	RCATGY	1 cut(s)	145
PaeI	GCATGC	1 cut(s)	145
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	223
Pfl23II	CGTACG	1 cut(s)	60
PkrI	GCNGC	3 cut(s)	91, 147, 236
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspLI	CGTACG	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	115
RsaI	GTAC	2 cut(s)	62, 206
RsaNI	GTAC	2 cut(s)	61, 205
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	3 cut(s)	90, 146, 235
Sau3AI	GATC	3 cut(s)	78, 277, 295
Sau96I	GGNCC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	266
SetI	ASST	4 cut(s)	57, 150, 189, 321
SfaNI	GCATC	2 cut(s)	101, 322
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	156
SphI	GCATGC	1 cut(s)	145
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	27
TaqII	GACCGA	1 cut(s)	30
TasI	AATT	1 cut(s)	102
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TseI	GCWGC	3 cut(s)	89, 145, 234
TspDTI	ATGAA	2 cut(s)	17, 36
VpaK11BI	GGWCC	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	273
XceI	RCATGY	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.