Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002510.1

Orthogroup ID

OG0009411

Physical Location & Seq

Genomic Coordinates Reverse (-)

116230 .. 117405

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002510.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgaatgccccagaccgatatgagcgatttgttgtccctgaagggacaaaaaaggtgtcgtatgagagggatacgaagatcataaatgctgcatcgtttacgattgagagagaggatcacactattggcaacatccttcgcatgcagctgcaccgggatgaaagtgttttatttgctggctacaagcttcctcacccacttcagtacaagataattgtcaggattcacacaaccagccagtcatcaccaatgcaggcatataaccaggcaattaatgatcttgacaaagaacttgaccttttgaagagtaattttgaggctgaggtagcaaagcattcaatgcaagtggactactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_L_2

Protein Analysis

118

Amino Acids

13.71

Weight (kDa)

6.19

Isoelectric Point (pI)

24.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52090 AT3G52090
fragaria_vesca	FvH4_2g07830
malus_domestica	MD05G1071600.v1.1 MD10G1083600.v1.1
prunus_persica	Prupe.8G106600_v2.0.a1 Prupe.8G106600_v2.0.a1
pyrus_communis	pycom05g06170 pycom10g06570
rosa_chinensis	RchiOBHm_Chr6g0262241
rosa_multiflora	Rmu_sc0002510.1_g000027 Rmu_sc0010083.1_g000004
rosa_roxburghii	Rroxscaffold_7G00207930
rosa_rugosa	Rorug05G0595600 Rorug05G0595700 Rorug05G0595700
rosa_samantha	Rh2AG296400 Rh2DG320300 Rh6AG115800 Rh6BG110100 Rh6DG098100
rosa_wichuraiana	Rw6G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	123
AcuI	CTGAAG	2 cut(s)	60, 185
AfaI	GTAC	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	304, 339
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	2 cut(s)	148, 187
AluI	AGCT	2 cut(s)	148, 187
AlwI	GGATC	1 cut(s)	123
ApeKI	GCWGC	3 cut(s)	89, 145, 148
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AseI	ATTAAT	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	185, 237
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	3 cut(s)	76, 135, 157
BciT130I	CCWGG	1 cut(s)	266
BciVI	GTATCC	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	155
BfaI	CTAG	1 cut(s)	355
BfuI	GTATCC	1 cut(s)	64
BisI	GCNGC	3 cut(s)	90, 146, 149
BlsI	GCNGC	3 cut(s)	91, 147, 150
Bme1390I	CCNGG	2 cut(s)	155, 266
BmrFI	CCNGG	2 cut(s)	155, 266
BmsI	GCATC	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	266
BseGI	GGATG	2 cut(s)	132, 163
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	76, 135, 157
BsgI	GTGCAG	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	2 cut(s)	20, 58
BsmFI	GGGAC	2 cut(s)	20, 58
BsmI	GAATGC	2 cut(s)	10, 334
Bsp143I	GATC	3 cut(s)	78, 115, 277
BspCNI	CTCAG	1 cut(s)	313
BspPI	GGATC	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	238
BssMI	GATC	3 cut(s)	78, 115, 277
Bst2UI	CCWGG	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	340
BstC8I	GCNNGC	3 cut(s)	143, 178, 255
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	2 cut(s)	132, 163
BstKTI	GATC	3 cut(s)	81, 118, 280
BstMBI	GATC	3 cut(s)	78, 115, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 340
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	153, 264
BstV1I	GCAGC	3 cut(s)	76, 135, 157
BsuI	GTATCC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	132, 163
Cac8I	GCNNGC	3 cut(s)	143, 178, 255
Csp6I	GTAC	1 cut(s)	205
CspCI	CAANNNNNGTGG	1 cut(s)	327
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	5 cut(s)	148, 180, 187, 237, 320
CviKI_1	RGCY	5 cut(s)	148, 180, 187, 237, 320
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	3 cut(s)	80, 117, 279
DpnII	GATC	3 cut(s)	78, 115, 277
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco57I	CTGAAG	2 cut(s)	60, 185
EcoRII	CCWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	145
FaiI	YATR	6 cut(s)	21, 63, 83, 143, 259, 261
FaqI	GGGAC	2 cut(s)	20, 58
FatI	CATG	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	90, 146, 149
FokI	GGATG	2 cut(s)	119, 170
Fsp4HI	GCNGC	3 cut(s)	90, 146, 149
FspBI	CTAG	1 cut(s)	355
GluI	GCNGC	3 cut(s)	90, 146, 149
HapII	CCGG	1 cut(s)	154
Hin1II	CATG	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	2 cut(s)	185, 237
Hpy166II	GTNNAC	2 cut(s)	99, 349
Hpy188III	TCNNGA	2 cut(s)	220, 281
Hpy8I	GTNNAC	2 cut(s)	99, 349
HpyAV	CCTTC	2 cut(s)	35, 146
HpyCH4V	TGCA	5 cut(s)	92, 145, 151, 253, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 340
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	78, 115, 277
Lsp1109I	GCAGC	3 cut(s)	76, 135, 157
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	1 cut(s)	355
MalI	GATC	3 cut(s)	80, 117, 279
MboI	GATC	3 cut(s)	78, 115, 277
MboII	GAAGA	2 cut(s)	88, 316
MluCI	AATT	3 cut(s)	213, 270, 310
MnlI	CCTC	5 cut(s)	60, 106, 201, 310, 316
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	2 cut(s)	155, 266
Mva1269I	GAATGC	2 cut(s)	10, 334
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	326, 340
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	3 cut(s)	78, 115, 277
NlaIII	CATG	1 cut(s)	145
NspI	RCATGY	1 cut(s)	145
PaeI	GCATGC	1 cut(s)	145
PctI	GAATGC	2 cut(s)	10, 334
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	91, 147, 150
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	3 cut(s)	90, 146, 149
Sau3AI	GATC	3 cut(s)	78, 115, 277
ScrFI	CCNGG	2 cut(s)	155, 266
SetI	ASST	5 cut(s)	57, 150, 189, 300, 327
SfaNI	GCATC	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	156
SphI	GCATGC	1 cut(s)	145
Sse9I	AATT	3 cut(s)	213, 270, 310
SspMI	CTAG	1 cut(s)	355
StyD4I	CCNGG	2 cut(s)	153, 264
TaqII	GACCGA	1 cut(s)	30
TasI	AATT	3 cut(s)	213, 270, 310
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TseI	GCWGC	3 cut(s)	89, 145, 148
TspDTI	ATGAA	2 cut(s)	17, 174
VspI	ATTAAT	1 cut(s)	273
XceI	RCATGY	1 cut(s)	145
XspI	CTAG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.