Prupe.8G191500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0018762
Physical Location & Seq
Reverse (-)
18587742 .. 18588032
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G191500.1

Sequence Viewer

Length: 291 bp
ATGTTGAGGAGAGGTAGTATTGCCATCTGTTTATCAAATTCCACCATGTTGGTTGGCTGGTGCCGGCCACGGAGGCGGCTGAGAAGGCGGAGAGGGAGCACGATTTGGCTAGGAAATAAGCGCCGCGGGTTCGGCCTAGGGTCACGGCCGGCGCTACAATGGGGGGCCGTGGTCAGCCCTATAAGGATGCTGAAGAAGATGTTCATGGAGATGGTACCTAATGAAAGGTGGATAGAAGCTTACAATTGGTCTCTGCCATTTTTACGTCCTCAAATATTTCCTCTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.33

Weight (kDa)

12.0

Isoelectric Point (pI)

100.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018762)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07425
prunus_persica Prupe.8G191500_v2.0.a1
pyrus_communis pycom10g13180
rosa_chinensis RchiOBHm_Chr6g0283141
rosa_roxburghii Rroxscaffold_7G00185740
rosa_samantha Rh6BG267400 Rh6CG266400 Rh6DG259700
rosa_wichuraiana Rw6G022890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 214
AccB1I GGYRCC 2 cut(s) 60, 214
AccII CGCG 1 cut(s) 126
AciI CCGC 4 cut(s) 76, 88, 124, 126
AcoI YGGCCR 2 cut(s) 65, 146
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 1 cut(s) 216
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 255
AoxI GGCC 4 cut(s) 65, 133, 146, 165
ApoI RAATTY 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 200
Asp718I GGTACC 1 cut(s) 214
AspA2I CCTAGG 1 cut(s) 136
AspLEI GCGC 2 cut(s) 123, 154
AspS9I GGNCC 1 cut(s) 165
AvrII CCTAGG 1 cut(s) 136
BanI GGYRCC 2 cut(s) 60, 214
Bbv12I GWGCWC 1 cut(s) 101
BccI CCATC 2 cut(s) 32, 205
BceAI ACGGC 2 cut(s) 152, 161
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 2 cut(s) 110, 137
BfoI RGCGCY 2 cut(s) 124, 155
BglI GCCNNNNNGGC 1 cut(s) 73
BisI GCNGC 2 cut(s) 77, 124
BlnI CCTAGG 1 cut(s) 136
BlsI GCNGC 2 cut(s) 78, 125
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 3 cut(s) 62, 166, 216
BmsI GCATC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 255
BsaJI CCNNGG 4 cut(s) 68, 124, 136, 168
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bse118I RCCGGY 2 cut(s) 63, 148
BseDI CCNNGG 4 cut(s) 68, 124, 136, 168
BseGI GGATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 22
BseX3I CGGCCG 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 4 cut(s) 67, 135, 148, 167
BshNI GGYRCC 2 cut(s) 60, 214
BsiEI CGRYCG 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 101
BsiSI CCGG 2 cut(s) 64, 149
BsmAI GTCTC 1 cut(s) 255
BsnI GGCC 4 cut(s) 67, 135, 148, 167
Bso31I GGTCTC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 101
BspACI CCGC 4 cut(s) 76, 88, 124, 126
BspANI GGCC 4 cut(s) 67, 135, 148, 167
BspCNI CTCAG 1 cut(s) 72
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 3 cut(s) 62, 166, 216
BspT107I GGYRCC 2 cut(s) 60, 214
BspTNI GGTCTC 1 cut(s) 255
BsrFI RCCGGY 2 cut(s) 63, 148
BssAI RCCGGY 2 cut(s) 63, 148
BssECI CCNNGG 4 cut(s) 68, 124, 136, 168
BssT1I CCWWGG 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 65, 150
BstDEI CTNAG 1 cut(s) 80
BstDSI CCRYGG 3 cut(s) 68, 124, 168
BstF5I GGATG 1 cut(s) 192
BstFNI CGCG 1 cut(s) 126
BstH2I RGCGCY 2 cut(s) 124, 155
BstHHI GCGC 2 cut(s) 123, 154
BstMAI GTCTC 1 cut(s) 255
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 3 cut(s) 73, 85, 132
BstUI CGCG 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 49
BstZI CGGCCG 1 cut(s) 146
BsuRI GGCC 4 cut(s) 67, 135, 148, 167
BtgI CCRYGG 3 cut(s) 68, 124, 168
BtsCI GGATG 1 cut(s) 192
Cac8I GCNNGC 2 cut(s) 65, 150
CfoI GCGC 2 cut(s) 123, 154
Cfr10I RCCGGY 2 cut(s) 63, 148
Cfr13I GGNCC 1 cut(s) 165
Cfr42I CCGCGG 1 cut(s) 127
Csp6I GTAC 1 cut(s) 215
CviAII CATG 2 cut(s) 46, 205
CviJI RGCY 9 cut(s) 57, 67, 79, 109, 135, 148, 167, 177, 239
CviKI_1 RGCY 9 cut(s) 57, 67, 79, 109, 135, 148, 167, 177, 239
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 1 cut(s) 80
EaeI YGGCCR 2 cut(s) 65, 146
EagI CGGCCG 1 cut(s) 146
EciI GGCGGA 1 cut(s) 103
EclXI CGGCCG 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 136
Eco31I GGTCTC 1 cut(s) 255
Eco52I CGGCCG 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 2 cut(s) 49, 208
FaiI YATR 3 cut(s) 47, 182, 206
FatI CATG 2 cut(s) 45, 204
FauI CCCGC 1 cut(s) 119
Fnu4HI GCNGC 2 cut(s) 77, 124
FokI GGATG 1 cut(s) 199
Fsp4HI GCNGC 2 cut(s) 77, 124
FspBI CTAG 2 cut(s) 110, 137
GlaI GCGC 2 cut(s) 122, 153
GluI GCNGC 2 cut(s) 77, 124
HaeII RGCGCY 2 cut(s) 124, 155
HaeIII GGCC 4 cut(s) 67, 135, 148, 167
HapII CCGG 2 cut(s) 64, 149
HhaI GCGC 2 cut(s) 123, 154
Hin1II CATG 2 cut(s) 49, 208
Hin6I GCGC 2 cut(s) 121, 152
HinP1I GCGC 2 cut(s) 121, 152
HindIII AAGCTT 1 cut(s) 237
HpaII CCGG 2 cut(s) 64, 149
HpyAV CCTTC 1 cut(s) 78
HpyCH4IV ACGT 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 85, 132
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 2 cut(s) 49, 208
HspAI GCGC 2 cut(s) 121, 152
KpnI GGTACC 1 cut(s) 218
KroI GCCGGC 2 cut(s) 63, 148
KroNI GCCGGC 2 cut(s) 65, 150
KspI CCGCGG 1 cut(s) 127
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 3 cut(s) 43, 77, 162
LweI GCATC 1 cut(s) 177
MaeI CTAG 2 cut(s) 110, 137
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 1 cut(s) 141
MboII GAAGA 2 cut(s) 205, 208
MfeI CAATTG 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 2 cut(s) 37, 244
MnlI CCTC 5 cut(s) 5, 66, 86, 279, 291
MroNI GCCGGC 2 cut(s) 63, 148
MroXI GAANNNNTTC 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 126
MspI CCGG 2 cut(s) 64, 149
MunI CAATTG 1 cut(s) 244
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 3 cut(s) 73, 85, 132
NaeI GCCGGC 2 cut(s) 65, 150
NgoMIV GCCGGC 2 cut(s) 63, 148
NlaIII CATG 2 cut(s) 49, 208
NlaIV GGNNCC 3 cut(s) 62, 166, 216
NmuCI GTSAC 1 cut(s) 141
PdiI GCCGGC 2 cut(s) 65, 150
PdmI GAANNNNTTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 78, 125
PspN4I GGNNCC 3 cut(s) 62, 166, 216
PspPI GGNCC 1 cut(s) 165
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 209
SacII CCGCGG 1 cut(s) 127
SatI GCNGC 2 cut(s) 77, 124
Sau96I GGNCC 1 cut(s) 165
SduI GDGCHC 1 cut(s) 101
SetI ASST 5 cut(s) 16, 220, 230, 241, 268
SfaNI GCATC 1 cut(s) 177
Sfr303I CCGCGG 1 cut(s) 127
SgrBI CCGCGG 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 209
Sse9I AATT 2 cut(s) 37, 244
SsiI CCGC 4 cut(s) 76, 88, 124, 126
SspI AATATT 1 cut(s) 276
SspMI CTAG 2 cut(s) 110, 137
StyI CCWWGG 1 cut(s) 136
TaiI ACGT 1 cut(s) 268
TasI AATT 2 cut(s) 37, 244
TauI GCSGC 2 cut(s) 79, 126
TseFI GTSAC 1 cut(s) 141
Tsp45I GTSAC 1 cut(s) 141
TspDTI ATGAA 2 cut(s) 193, 237
TspGWI ACGGA 1 cut(s) 85
XapI RAATTY 1 cut(s) 37
XmaJI CCTAGG 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 2 cut(s) 110, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.