Rh6BG267400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0018762
Physical Location & Seq
Reverse (-)
48430928 .. 48431618
691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG267400.1

Sequence Viewer

Length: 255 bp
ATGTTGGTTGGGTGGTGCCGGCCACGGAGGCGGATTAGAAGGCGGAGAGGTAGCACAATATGGCTCGGGAATAAGCGCCGACGGTTCTGCCTAGGCTCGCGTTCAGTGCTACAATGGGGGGCAATGGCTGGTCCTATTCGGATGTACAATCAGAAGTTCAGATACAAGTTCGATACAACAGAAAGGATCACTACACTGCCTAGCCGCAAAAGATGGGGAAACATAGGAGATTACACAGTACCGACTGTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

10.06

Weight (kDa)

11.96

Isoelectric Point (pI)

103.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018762)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07425
prunus_persica Prupe.8G191500_v2.0.a1
pyrus_communis pycom10g13180
rosa_chinensis RchiOBHm_Chr6g0283141
rosa_roxburghii Rroxscaffold_7G00185740
rosa_samantha Rh6BG267400 Rh6CG266400 Rh6DG259700
rosa_wichuraiana Rw6G022890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 15
AccII CGCG 1 cut(s) 100
AciI CCGC 3 cut(s) 31, 43, 205
AclWI GGATC 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 20
AfaI GTAC 2 cut(s) 146, 240
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
AlwI GGATC 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 1 cut(s) 20
AspA2I CCTAGG 1 cut(s) 91
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 65
AvaII GGWCC 1 cut(s) 131
AvrII CCTAGG 1 cut(s) 91
BanI GGYRCC 1 cut(s) 15
BarI GAAGNNNNNNTAC 2 cut(s) 146, 178
BccI CCATC 1 cut(s) 207
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BfaI CTAG 2 cut(s) 92, 201
BfmI CTRYAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 79
BglI GCCNNNNNGGC 1 cut(s) 28
BisI GCNGC 1 cut(s) 205
BlnI CCTAGG 1 cut(s) 91
BlsI GCNGC 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 23, 91
Bse118I RCCGGY 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 23, 91
BseGI GGATG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 22
BshNI GGYRCC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 1 cut(s) 19
BsnI GGCC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 65
Bsp1407I TGTACA 1 cut(s) 144
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 3 cut(s) 31, 43, 205
BspANI GGCC 1 cut(s) 22
BspFNI CGCG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 17
BspPI GGATC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 18
BsrGI TGTACA 1 cut(s) 144
BssAI RCCGGY 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 23, 91
BssMI GATC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 91
Bst4CI ACNGT 3 cut(s) 84, 238, 247
BstAUI TGTACA 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 20, 98
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 2 cut(s) 28, 106
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 1 cut(s) 100
BsuRI GGCC 1 cut(s) 22
BtgI CCRYGG 1 cut(s) 23
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 2 cut(s) 111, 194
Cac8I GCNNGC 2 cut(s) 20, 98
CfoI GCGC 1 cut(s) 78
Cfr10I RCCGGY 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 2 cut(s) 145, 239
CviJI RGCY 6 cut(s) 22, 64, 96, 128, 204, 251
CviKI_1 RGCY 6 cut(s) 22, 64, 96, 128, 204, 251
CviQI GTAC 2 cut(s) 145, 239
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
EaeI YGGCCR 1 cut(s) 20
EciI GGCGGA 2 cut(s) 46, 58
Eco130I CCWWGG 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaiI YATR 2 cut(s) 61, 224
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 2 cut(s) 92, 201
GlaI GCGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 205
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 19
HhaI GCGC 1 cut(s) 78
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HpaII CCGG 1 cut(s) 19
Hpy188I TCNGA 3 cut(s) 141, 153, 161
Hpy188III TCNNGA 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 3 cut(s) 84, 238, 247
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 106
HspAI GCGC 1 cut(s) 76
KroI GCCGGC 1 cut(s) 18
KroNI GCCGGC 1 cut(s) 20
Kzo9I GATC 1 cut(s) 186
LpnPI CCDG 2 cut(s) 32, 114
MaeI CTAG 2 cut(s) 92, 201
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MnlI CCTC 2 cut(s) 21, 41
MroNI GCCGGC 1 cut(s) 18
MspI CCGG 1 cut(s) 19
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 2 cut(s) 28, 106
NaeI GCCGGC 1 cut(s) 20
NdeII GATC 1 cut(s) 186
NgoMIV GCCGGC 1 cut(s) 18
NlaIV GGNNCC 1 cut(s) 17
PdiI GCCGGC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 17
PspPI GGNCC 1 cut(s) 131
RsaI GTAC 2 cut(s) 146, 240
RsaNI GTAC 2 cut(s) 145, 239
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 1 cut(s) 186
Sau96I GGNCC 1 cut(s) 131
SetI ASST 2 cut(s) 52, 253
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 131
SsiI CCGC 3 cut(s) 31, 43, 205
SspMI CTAG 2 cut(s) 92, 201
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 3 cut(s) 84, 238, 247
TaqI TCGA 1 cut(s) 171
TatI WGTACW 1 cut(s) 144
TauI GCSGC 1 cut(s) 207
TscAI CASTG 2 cut(s) 111, 201
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 2 cut(s) 111, 201
VpaK11BI GGWCC 1 cut(s) 131
XmaJI CCTAGG 1 cut(s) 91
XspI CTAG 2 cut(s) 92, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.