RchiOBHm_Chr6g0283141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0018762
Physical Location & Seq
Reverse (-)
46324111 .. 46324404
294 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25385

Sequence Viewer

Length: 294 bp
ATGTTGAGGAGAGGTTCTATAACCATATCTATGTTGTCAGACTCTACTATGTTGGTTGGGTGGTGCCGGCCACGGAGGCGGATTAGAAGGCGGAGAGGTAGCACAATATGGCTCGGGAATAAGCGCCGACGGTTCTGCCTAGGCTCGCGTTCAGTGCTACAATGGGGGGCAATGGCTGGTCCTATTCGGATGGTAAGGAAAATCATTATGGAGATGGTACCTAATGGAAGATGGATAGAAGCTTATAATTGGTCTTTGCCAATTTTACGTCCACAAATATTTCCCATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.49

Weight (kDa)

12.0

Isoelectric Point (pI)

98.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018762)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07425
prunus_persica Prupe.8G191500_v2.0.a1
pyrus_communis pycom10g13180
rosa_chinensis RchiOBHm_Chr6g0283141
rosa_roxburghii Rroxscaffold_7G00185740
rosa_samantha Rh6BG267400 Rh6CG266400 Rh6DG259700
rosa_wichuraiana Rw6G022890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
Acc65I GGTACC 1 cut(s) 217
AccB1I GGYRCC 2 cut(s) 63, 217
AccII CGCG 1 cut(s) 148
AciI CCGC 2 cut(s) 79, 91
AcoI YGGCCR 1 cut(s) 68
AfaI GTAC 1 cut(s) 219
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 1 cut(s) 68
Asp718I GGTACC 1 cut(s) 217
AspA2I CCTAGG 1 cut(s) 139
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 1 cut(s) 179
AvrII CCTAGG 1 cut(s) 139
BanI GGYRCC 2 cut(s) 63, 217
BccI CCATC 3 cut(s) 184, 208, 225
BcgI CGANNNNNNTGC 2 cut(s) 117, 151
BfaI CTAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 127
BglI GCCNNNNNGGC 1 cut(s) 76
BlnI CCTAGG 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 2 cut(s) 65, 219
BsaJI CCNNGG 2 cut(s) 71, 139
Bse118I RCCGGY 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 71, 139
BseGI GGATG 1 cut(s) 195
BseMI GCAATG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 22
Bsh1236I CGCG 1 cut(s) 148
BshFI GGCC 1 cut(s) 70
BshNI GGYRCC 2 cut(s) 63, 217
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 1 cut(s) 67
BsnI GGCC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 113
BspACI CCGC 2 cut(s) 79, 91
BspANI GGCC 1 cut(s) 70
BspFNI CGCG 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 65, 219
BspT107I GGYRCC 2 cut(s) 63, 217
BsrDI GCAATG 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 71, 139
BssT1I CCWWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 68, 146
BstDSI CCRYGG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 195
BstFNI CGCG 1 cut(s) 148
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstMWI GCNNNNNNNGC 2 cut(s) 76, 154
BstUI CGCG 1 cut(s) 148
BsuRI GGCC 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 71
BtsCI GGATG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 2 cut(s) 68, 146
CfoI GCGC 1 cut(s) 126
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 218
CviAII CATG 1 cut(s) 286
CviJI RGCY 5 cut(s) 70, 112, 144, 176, 242
CviKI_1 RGCY 5 cut(s) 70, 112, 144, 176, 242
CviQI GTAC 1 cut(s) 218
EaeI YGGCCR 1 cut(s) 68
EciI GGCGGA 2 cut(s) 94, 106
Eco130I CCWWGG 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 1 cut(s) 289
FaiI YATR 8 cut(s) 20, 26, 32, 50, 109, 209, 246, 287
FatI CATG 1 cut(s) 285
FokI GGATG 1 cut(s) 202
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 125
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 1 cut(s) 70
HapII CCGG 1 cut(s) 67
HhaI GCGC 1 cut(s) 126
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 1 cut(s) 41
HpaII CCGG 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 2 cut(s) 40, 189
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 154
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 1 cut(s) 124
KpnI GGTACC 1 cut(s) 221
KroI GCCGGC 1 cut(s) 66
KroNI GCCGGC 1 cut(s) 68
LpnPI CCDG 2 cut(s) 80, 162
MaeI CTAG 1 cut(s) 140
MaeII ACGT 1 cut(s) 268
MboII GAAGA 1 cut(s) 240
MluCI AATT 2 cut(s) 247, 261
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 3 cut(s) 5, 69, 89
MroNI GCCGGC 1 cut(s) 66
MseI TTAA 1 cut(s) 292
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 1 cut(s) 67
MvnI CGCG 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 76, 154
NaeI GCCGGC 1 cut(s) 68
NgoMIV GCCGGC 1 cut(s) 66
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 2 cut(s) 65, 219
PdiI GCCGGC 1 cut(s) 68
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PsiI TTATAA 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 65, 219
PspPI GGNCC 1 cut(s) 179
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 1 cut(s) 35
SetI ASST 5 cut(s) 16, 100, 223, 244, 271
SgeI CNNG 8 cut(s) 79, 84, 125, 127, 152, 157, 159, 189
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 2 cut(s) 247, 261
SsiI CCGC 2 cut(s) 79, 91
SspI AATATT 1 cut(s) 279
SspMI CTAG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 132
TaiI ACGT 1 cut(s) 271
TasI AATT 2 cut(s) 247, 261
Tru1I TTAA 1 cut(s) 292
Tru9I TTAA 1 cut(s) 292
TscAI CASTG 1 cut(s) 159
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 179
XmaJI CCTAGG 1 cut(s) 139
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.