pycom01g06370

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0022195
Physical Location & Seq
Reverse (-)
6592709 .. 6593344
636 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06370.2

Sequence Viewer

Length: 537 bp
ATGCACACCGACGAAGAACGATGTCTTCTCTTCCCCTCTACCTTCTCTAGCGGAGCTCTGAATTGGTATTGTCGTCTTCCACCTGAGACAAAGCCGGACGAGCCACTGCAAAAGTATGCCGACCACTTCAGCCATAAGTCTTCTCGCTGCACTGAGGCAGATGACAAGACCGCCCTTAAAGCCTTCATGGCAGGTCTACGTGATTGTTTCTTCAAGTACATAATCAATGCCAACACTTGGAAGACTTACTCTGGGGTGATGGCACATGCTTACAACCACGCCTCCACCAAAGCAAGGACATACCAAGGGAGCCCCTATATGGTTAACCCCTATCAACAAGTGGGAAGTGGAAGTCAAGTTCTACCAAGTGAGGAGATCTTGGCCATTCAGACACACATTGCATCATCTCTTACCTCATTTAGCTACTCGCTAAGTCACCAAACGTATTTGTCTCTTGGTAAGAGGAAGAATTTTTACTCTCAGCAAGCTTATTACAACAAGAGGGATAAAAGTTCGTATCAAGACAACCATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

179

Amino Acids

20.43

Weight (kDa)

8.95

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g26082
pyrus_communis pycom01g06370 pycom02g18840 pycom15g08660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 182
AccB7I CCANNNNNTGG 1 cut(s) 237
AccI GTMKAC 1 cut(s) 196
AciI CCGC 2 cut(s) 51, 171
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 1 cut(s) 469
AcuI CTGAAG 1 cut(s) 112
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 3 cut(s) 237, 294, 319
AgsI TTSAA 1 cut(s) 214
AloI GAACNNNNNNTCC 2 cut(s) 342, 374
AluBI AGCT 3 cut(s) 56, 423, 488
AluI AGCT 3 cut(s) 56, 423, 488
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 2 cut(s) 80, 456
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 469
AsuHPI GGTGA 2 cut(s) 268, 428
BalI TGGCCA 1 cut(s) 383
BanII GRGCYC 2 cut(s) 58, 314
BarI GAAGNNNNNNTAC 2 cut(s) 458, 490
BbsI GAAGAC 4 cut(s) 17, 68, 132, 248
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 134
BccI CCATC 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 80, 456
BfaI CTAG 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 182
BglI GCCNNNNNGGC 1 cut(s) 188
BglII AGATCT 1 cut(s) 375
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 311
BmsI GCATC 1 cut(s) 410
BpiI GAAGAC 4 cut(s) 17, 68, 132, 248
BsaAI YACGTR 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 294, 319
Bse3DI GCAATG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 304
BseLI CCNNNNNNNGG 3 cut(s) 237, 294, 319
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 3 cut(s) 75, 144, 494
BseRI GAGGAG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 133
BshFI GGCC 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 3 cut(s) 237, 294, 319
BsmAI GTCTC 2 cut(s) 80, 456
BsnI GGCC 1 cut(s) 383
Bsp1286I GDGCHC 2 cut(s) 58, 314
Bsp143I GATC 1 cut(s) 375
BspACI CCGC 2 cut(s) 51, 171
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 3 cut(s) 76, 145, 493
BspLI GGNNCC 1 cut(s) 311
BspMI ACCTGC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 396
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 1 cut(s) 375
BssT1I CCWWGG 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 35
BstBAI YACGTR 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 4 cut(s) 84, 153, 431, 480
BstKTI GATC 1 cut(s) 378
BstMAI GTCTC 2 cut(s) 80, 456
BstMBI GATC 1 cut(s) 375
BstMWI GCNNNNNNNGC 3 cut(s) 100, 179, 188
BstNSI RCATGY 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 134
BstV2I GAAGAC 4 cut(s) 17, 68, 132, 248
BstX2I RGATCY 1 cut(s) 375
BstYI RGATCY 1 cut(s) 375
BsuRI GGCC 1 cut(s) 383
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 2 cut(s) 104, 150
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 486
Csp6I GTAC 1 cut(s) 217
CviAII CATG 2 cut(s) 187, 266
CviJI RGCY 9 cut(s) 56, 94, 103, 132, 182, 312, 383, 423, 488
CviKI_1 RGCY 9 cut(s) 56, 94, 103, 132, 182, 312, 383, 423, 488
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 4 cut(s) 84, 153, 431, 480
DpnI GATC 1 cut(s) 377
DpnII GATC 1 cut(s) 375
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 304
Eco24I GRGCYC 2 cut(s) 58, 314
Eco53kI GAGCTC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 304
EcoT38I GRGCYC 2 cut(s) 58, 314
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 2 cut(s) 190, 269
FaiI YATR 9 cut(s) 117, 135, 188, 221, 267, 301, 318, 320, 531
FatI CATG 2 cut(s) 186, 265
FblI GTMKAC 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 148
FriOI GRGCYC 2 cut(s) 58, 314
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 1 cut(s) 48
GluI GCNGC 1 cut(s) 148
HaeIII GGCC 1 cut(s) 383
HapII CCGG 1 cut(s) 95
Hin1II CATG 2 cut(s) 190, 269
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 486
HpaI GTTAAC 1 cut(s) 325
HpaII CCGG 1 cut(s) 95
HphI GGTGA 2 cut(s) 268, 428
Hpy166II GTNNAC 2 cut(s) 197, 325
Hpy188I TCNGA 2 cut(s) 60, 390
Hpy188III TCNNGA 1 cut(s) 521
Hpy8I GTNNAC 2 cut(s) 197, 325
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 52, 193
HpyCH4IV ACGT 2 cut(s) 199, 443
HpyCH4V TGCA 4 cut(s) 4, 109, 150, 401
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 179, 188
HpyF3I CTNAG 4 cut(s) 84, 153, 431, 480
HpySE526I ACGT 2 cut(s) 199, 443
Hsp92II CATG 2 cut(s) 190, 269
KspAI GTTAAC 1 cut(s) 325
Kzo9I GATC 1 cut(s) 375
LmnI GCTCC 2 cut(s) 53, 309
LpnPI CCDG 4 cut(s) 96, 108, 177, 237
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 1 cut(s) 410
MaeI CTAG 1 cut(s) 48
MaeII ACGT 2 cut(s) 199, 443
MaeIII GTNAC 1 cut(s) 434
MalI GATC 1 cut(s) 377
MboI GATC 1 cut(s) 375
MboII GAAGA 8 cut(s) 17, 22, 26, 68, 132, 202, 253, 478
MflI RGATCY 1 cut(s) 375
MhlI GDGCHC 2 cut(s) 58, 314
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 2 cut(s) 61, 469
MluNI TGGCCA 1 cut(s) 383
MnlI CCTC 7 cut(s) 46, 148, 292, 364, 424, 456, 495
Mox20I TGGCCA 1 cut(s) 383
MscI TGGCCA 1 cut(s) 383
MseI TTAA 2 cut(s) 177, 324
Msp20I TGGCCA 1 cut(s) 383
MspI CCGG 1 cut(s) 95
MwoI GCNNNNNNNGC 3 cut(s) 100, 179, 188
NdeII GATC 1 cut(s) 375
NlaIII CATG 2 cut(s) 190, 269
NlaIV GGNNCC 1 cut(s) 311
NmuCI GTSAC 1 cut(s) 434
NspI RCATGY 1 cut(s) 269
PflMI CCANNNNNTGG 1 cut(s) 237
PkrI GCNGC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 311
PsuI RGATCY 1 cut(s) 375
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SacI GAGCTC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 177, 324
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 1 cut(s) 375
SduI GDGCHC 2 cut(s) 58, 314
SfaNI GCATC 1 cut(s) 410
Sse9I AATT 2 cut(s) 61, 469
SsiI CCGC 2 cut(s) 51, 171
SspMI CTAG 1 cut(s) 48
SstI GAGCTC 1 cut(s) 58
StyI CCWWGG 1 cut(s) 304
TaiI ACGT 2 cut(s) 202, 446
TasI AATT 2 cut(s) 61, 469
TatI WGTACW 1 cut(s) 216
Tru1I TTAA 2 cut(s) 177, 324
Tru9I TTAA 2 cut(s) 177, 324
TscAI CASTG 2 cut(s) 111, 157
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 1 cut(s) 147
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 1 cut(s) 175
TspRI CASTG 2 cut(s) 111, 157
Van91I CCANNNNNTGG 1 cut(s) 237
XapI RAATTY 1 cut(s) 469
XceI RCATGY 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 196
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.