Retrotransposon gag protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g26082 |
| pyrus_communis | pycom01g06370 pycom02g18840 pycom15g08660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1700 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 989 |
| AccB1I | GGYRCC | 4 cut(s) | 219, 306, 533, 2950 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 529, 1371 |
| AccI | GTMKAC | 1 cut(s) | 1806 |
| AccII | CGCG | 1 cut(s) | 3351 |
| AciI | CCGC | 4 cut(s) | 1197, 1258, 1305, 1419 |
| AclWI | GGATC | 6 cut(s) | 559, 706, 776, 1040, 1053, 1912 |
| AcoI | YGGCCR | 2 cut(s) | 1255, 1515 |
| AcuI | CTGAAG | 7 cut(s) | 397, 442, 1246, 1443, 1704, 2574, 2594 |
| AcyI | GRCGYC | 1 cut(s) | 220 |
| AdeI | CACNNNGTG | 1 cut(s) | 373 |
| AgeI | ACCGGT | 2 cut(s) | 2274, 2334 |
| AjnI | CCWGG | 8 cut(s) | 302, 528, 862, 1025, 1662, 2154, 2219, 2379 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3118, 3150, 3228, 3260 |
| AleI | CACNNNNGTG | 1 cut(s) | 531 |
| Alw21I | GWGCWC | 1 cut(s) | 3424 |
| Alw26I | GTCTC | 6 cut(s) | 614, 933, 1590, 2760, 2789, 3291 |
| AlwI | GGATC | 6 cut(s) | 559, 706, 776, 1040, 1053, 1912 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 968 |
| AoxI | GGCC | 6 cut(s) | 1022, 1028, 1255, 1327, 1515, 3205 |
| ApeKI | GCWGC | 1 cut(s) | 638 |
| AsiGI | ACCGGT | 2 cut(s) | 2274, 2334 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 455, 1993 |
| AspA2I | CCTAGG | 2 cut(s) | 1019, 3202 |
| AspLEI | GCGC | 2 cut(s) | 222, 1286 |
| AspS9I | GGNCC | 3 cut(s) | 982, 1023, 1114 |
| AsuII | TTCGAA | 3 cut(s) | 1987, 3137, 3145 |
| AvaII | GGWCC | 2 cut(s) | 982, 1114 |
| AvrII | CCTAGG | 2 cut(s) | 1019, 3202 |
| BaeGI | GKGCMC | 3 cut(s) | 538, 2050, 2955 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3499, 3532 |
| BalI | TGGCCA | 1 cut(s) | 1517 |
| BamHI | GGATCC | 1 cut(s) | 1045 |
| BanI | GGYRCC | 4 cut(s) | 219, 306, 533, 2950 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1592, 1624 |
| BbsI | GAAGAC | 2 cut(s) | 1382, 2461 |
| Bbv12I | GWGCWC | 1 cut(s) | 3424 |
| BbvCI | CCTCAGC | 1 cut(s) | 1287 |
| BbvI | GCAGC | 1 cut(s) | 625 |
| BccI | CCATC | 6 cut(s) | 764, 929, 1387, 1661, 2111, 2321 |
| BceAI | ACGGC | 4 cut(s) | 207, 692, 1292, 2573 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 620, 654, 840, 874 |
| BciT130I | CCWGG | 8 cut(s) | 304, 530, 864, 1027, 1664, 2156, 2221, 2381 |
| BciVI | GTATCC | 1 cut(s) | 3500 |
| BclI | TGATCA | 3 cut(s) | 610, 907, 2917 |
| BcoDI | GTCTC | 6 cut(s) | 614, 933, 1590, 2760, 2789, 3291 |
| BfmI | CTRYAG | 1 cut(s) | 3435 |
| BfoI | RGCGCY | 1 cut(s) | 223 |
| BfuI | GTATCC | 1 cut(s) | 3500 |
| BglII | AGATCT | 2 cut(s) | 1509, 1706 |
| BisI | GCNGC | 2 cut(s) | 639, 1258 |
| BlnI | CCTAGG | 2 cut(s) | 1019, 3202 |
| BlsI | GCNGC | 2 cut(s) | 640, 1259 |
| Bme1390I | CCNGG | 8 cut(s) | 304, 530, 864, 1027, 1664, 2156, 2221, 2381 |
| Bme18I | GGWCC | 2 cut(s) | 982, 1114 |
| BmgT120I | GGNCC | 3 cut(s) | 982, 1023, 1114 |
| BmiI | GGNNCC | 8 cut(s) | 221, 308, 535, 984, 1047, 1116, 1445, 2952 |
| BmrFI | CCNGG | 8 cut(s) | 304, 530, 864, 1027, 1664, 2156, 2221, 2381 |
| BmrI | ACTGGG | 1 cut(s) | 1685 |
| BmsI | GCATC | 7 cut(s) | 216, 453, 682, 1152, 1544, 1922, 2715 |
| BmuI | ACTGGG | 1 cut(s) | 1685 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1307 |
| BpiI | GAAGAC | 2 cut(s) | 1382, 2461 |
| BpmI | CTGGAG | 1 cut(s) | 240 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1287 |
| Bpu14I | TTCGAA | 3 cut(s) | 1987, 3137, 3145 |
| BpuEI | CTTGAG | 4 cut(s) | 530, 754, 1025, 3390 |
| Bsa29I | ATCGAT | 1 cut(s) | 1916 |
| BsaAI | YACGTR | 2 cut(s) | 76, 1334 |
| BsaHI | GRCGYC | 1 cut(s) | 220 |
| BsaWI | WCCGGW | 3 cut(s) | 2274, 2334, 3293 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1044, 1074, 1400, 1430 |
| Bse118I | RCCGGY | 3 cut(s) | 1253, 2274, 2334 |
| Bse1I | ACTGG | 2 cut(s) | 1680, 2415 |
| Bse3DI | GCAATG | 1 cut(s) | 1530 |
| BseBI | CCWGG | 8 cut(s) | 304, 530, 864, 1027, 1664, 2156, 2221, 2381 |
| BseCI | ATCGAT | 1 cut(s) | 1916 |
| BseGI | GGATG | 6 cut(s) | 468, 756, 1167, 1672, 1961, 2671 |
| BseMI | GCAATG | 1 cut(s) | 1530 |
| BseMII | CTCAG | 6 cut(s) | 992, 1278, 1628, 1761, 3353, 3372 |
| BseNI | ACTGG | 2 cut(s) | 1680, 2415 |
| BseRI | GAGGAG | 3 cut(s) | 945, 1520, 2612 |
| BseSI | GKGCMC | 3 cut(s) | 538, 2050, 2955 |
| BseX3I | CGGCCG | 1 cut(s) | 1255 |
| BseXI | GCAGC | 1 cut(s) | 625 |
| BseYI | CCCAGC | 1 cut(s) | 634 |
| Bsh1236I | CGCG | 1 cut(s) | 3351 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1258, 3294 |
| BshFI | GGCC | 6 cut(s) | 1024, 1030, 1257, 1329, 1517, 3207 |
| BshNI | GGYRCC | 4 cut(s) | 219, 306, 533, 2950 |
| BshTI | ACCGGT | 2 cut(s) | 2274, 2334 |
| BshVI | ATCGAT | 1 cut(s) | 1916 |
| BsiEI | CGRYCG | 2 cut(s) | 1258, 3294 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3424 |
| BsiSI | CCGG | 4 cut(s) | 1254, 2275, 2335, 3294 |
| BslFI | GGGAC | 1 cut(s) | 3320 |
| BsmAI | GTCTC | 6 cut(s) | 614, 933, 1590, 2760, 2789, 3291 |
| BsmFI | GGGAC | 1 cut(s) | 3320 |
| BsmI | GAATGC | 2 cut(s) | 1192, 1781 |
| BsnI | GGCC | 6 cut(s) | 1024, 1030, 1257, 1329, 1517, 3207 |
| Bsp119I | TTCGAA | 3 cut(s) | 1987, 3137, 3145 |
| Bsp1286I | GDGCHC | 4 cut(s) | 538, 2050, 2955, 3424 |
| Bsp1407I | TGTACA | 6 cut(s) | 1209, 2123, 2168, 2268, 2328, 2473 |
| Bsp19I | CCATGG | 1 cut(s) | 1149 |
| Bsp68I | TCGCGA | 1 cut(s) | 3351 |
| BspACI | CCGC | 4 cut(s) | 1197, 1258, 1305, 1419 |
| BspANI | GGCC | 6 cut(s) | 1024, 1030, 1257, 1329, 1517, 3207 |
| BspCNI | CTCAG | 6 cut(s) | 991, 1279, 1627, 1762, 3352, 3371 |
| BspDI | ATCGAT | 1 cut(s) | 1916 |
| BspFNI | CGCG | 1 cut(s) | 3351 |
| BspLI | GGNNCC | 8 cut(s) | 221, 308, 535, 984, 1047, 1116, 1445, 2952 |
| BspPI | GGATC | 6 cut(s) | 559, 706, 776, 1040, 1053, 1912 |
| BspQI | GCTCTTC | 2 cut(s) | 461, 2593 |
| BspT104I | TTCGAA | 3 cut(s) | 1987, 3137, 3145 |
| BspT107I | GGYRCC | 4 cut(s) | 219, 306, 533, 2950 |
| BsrDI | GCAATG | 1 cut(s) | 1530 |
| BsrFI | RCCGGY | 3 cut(s) | 1253, 2274, 2334 |
| BsrGI | TGTACA | 6 cut(s) | 1209, 2123, 2168, 2268, 2328, 2473 |
| BsrI | ACTGG | 2 cut(s) | 1680, 2415 |
| BssAI | RCCGGY | 3 cut(s) | 1253, 2274, 2334 |
| BssNI | GRCGYC | 1 cut(s) | 220 |
| BssT1I | CCWWGG | 7 cut(s) | 785, 1019, 1149, 1438, 3202, 3331, 3365 |
| Bst2UI | CCWGG | 8 cut(s) | 304, 530, 864, 1027, 1664, 2156, 2221, 2381 |
| Bst4CI | ACNGT | 4 cut(s) | 722, 878, 1981, 2045 |
| Bst6I | CTCTTC | 4 cut(s) | 461, 1740, 2593, 2765 |
| BstACI | GRCGYC | 1 cut(s) | 220 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 373 |
| BstAUI | TGTACA | 6 cut(s) | 1209, 2123, 2168, 2268, 2328, 2473 |
| BstBAI | YACGTR | 2 cut(s) | 76, 1334 |
| BstBI | TTCGAA | 3 cut(s) | 1987, 3137, 3145 |
| BstC8I | GCNNGC | 8 cut(s) | 346, 859, 1190, 1255, 1327, 1620, 2548, 2704 |
| BstDSI | CCRYGG | 1 cut(s) | 1149 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 152 |
| BstF5I | GGATG | 6 cut(s) | 468, 756, 1167, 1672, 1961, 2671 |
| BstFNI | CGCG | 1 cut(s) | 3351 |
| BstH2I | RGCGCY | 1 cut(s) | 223 |
| BstHHI | GCGC | 2 cut(s) | 222, 1286 |
| BstMAI | GTCTC | 6 cut(s) | 614, 933, 1590, 2760, 2789, 3291 |
| BstMCI | CGRYCG | 2 cut(s) | 1258, 3294 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 373, 1234, 1263, 1313, 1322, 1787, 1981, 2209, 2309 |
| BstNI | CCWGG | 8 cut(s) | 304, 530, 864, 1027, 1664, 2156, 2221, 2381 |
| BstNSI | RCATGY | 3 cut(s) | 857, 1850, 3465 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1307 |
| BstSCI | CCNGG | 8 cut(s) | 302, 528, 862, 1025, 1662, 2154, 2219, 2379 |
| BstSFI | CTRYAG | 1 cut(s) | 3435 |
| BstSLI | GKGCMC | 3 cut(s) | 538, 2050, 2955 |
| BstUI | CGCG | 1 cut(s) | 3351 |
| BstV1I | GCAGC | 1 cut(s) | 625 |
| BstV2I | GAAGAC | 2 cut(s) | 1382, 2461 |
| BstX2I | RGATCY | 3 cut(s) | 1045, 1509, 1706 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2158 |
| BstYI | RGATCY | 3 cut(s) | 1045, 1509, 1706 |
| BstZI | CGGCCG | 1 cut(s) | 1255 |
| Bsu15I | ATCGAT | 1 cut(s) | 1916 |
| BsuI | GTATCC | 1 cut(s) | 3500 |
| BsuRI | GGCC | 6 cut(s) | 1024, 1030, 1257, 1329, 1517, 3207 |
| BsuTUI | ATCGAT | 1 cut(s) | 1916 |
| BtgI | CCRYGG | 1 cut(s) | 1149 |
| BtsCI | GGATG | 6 cut(s) | 468, 756, 1167, 1672, 1961, 2671 |
| BtsIMutI | CAGTG | 3 cut(s) | 2041, 2422, 3366 |
| BtuMI | TCGCGA | 1 cut(s) | 3351 |
| Cac8I | GCNNGC | 8 cut(s) | 346, 859, 1190, 1255, 1327, 1620, 2548, 2704 |
| CaiI | CAGNNNCTG | 1 cut(s) | 968 |
| CfoI | GCGC | 2 cut(s) | 222, 1286 |
| Cfr10I | RCCGGY | 3 cut(s) | 1253, 2274, 2334 |
| Cfr13I | GGNCC | 3 cut(s) | 982, 1023, 1114 |
| ClaI | ATCGAT | 1 cut(s) | 1916 |
| CsiI | ACCWGGT | 3 cut(s) | 2154, 2219, 2379 |
| CspAI | ACCGGT | 2 cut(s) | 2274, 2334 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2753, 2788 |
| DinI | GGCGCC | 1 cut(s) | 221 |
| DraI | TTTAAA | 1 cut(s) | 1741 |
| DraIII | CACNNNGTG | 1 cut(s) | 373 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 989 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 989 |
| EaeI | YGGCCR | 2 cut(s) | 1255, 1515 |
| EagI | CGGCCG | 1 cut(s) | 1255 |
| Eam1104I | CTCTTC | 4 cut(s) | 461, 1740, 2593, 2765 |
| EarI | CTCTTC | 4 cut(s) | 461, 1740, 2593, 2765 |
| EclXI | CGGCCG | 1 cut(s) | 1255 |
| Eco130I | CCWWGG | 7 cut(s) | 785, 1019, 1149, 1438, 3202, 3331, 3365 |
| Eco147I | AGGCCT | 2 cut(s) | 1329, 3207 |
| Eco32I | GATATC | 2 cut(s) | 574, 1184 |
| Eco47I | GGWCC | 2 cut(s) | 982, 1114 |
| Eco52I | CGGCCG | 1 cut(s) | 1255 |
| Eco57I | CTGAAG | 7 cut(s) | 397, 442, 1246, 1443, 1704, 2574, 2594 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 152 |
| EcoO109I | RGGNCCY | 2 cut(s) | 982, 1023 |
| EcoRI | GAATTC | 1 cut(s) | 1752 |
| EcoRII | CCWGG | 8 cut(s) | 302, 528, 862, 1025, 1662, 2154, 2219, 2379 |
| EcoRV | GATATC | 2 cut(s) | 574, 1184 |
| EcoT14I | CCWWGG | 7 cut(s) | 785, 1019, 1149, 1438, 3202, 3331, 3365 |
| EcoT22I | ATGCAT | 2 cut(s) | 1931, 1971 |
| EgeI | GGCGCC | 1 cut(s) | 221 |
| EheI | GGCGCC | 1 cut(s) | 221 |
| ErhI | CCWWGG | 7 cut(s) | 785, 1019, 1149, 1438, 3202, 3331, 3365 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1073, 1105, 1693, 1725, 3495, 3527 |
| FaqI | GGGAC | 1 cut(s) | 3320 |
| FauNDI | CATATG | 1 cut(s) | 1452 |
| FbaI | TGATCA | 3 cut(s) | 610, 907, 2917 |
| FblI | GTMKAC | 1 cut(s) | 1806 |
| Fnu4HI | GCNGC | 2 cut(s) | 639, 1258 |
| FokI | GGATG | 6 cut(s) | 475, 743, 1174, 1679, 1948, 2658 |
| Fsp4HI | GCNGC | 2 cut(s) | 639, 1258 |
| GlaI | GCGC | 2 cut(s) | 221, 1285 |
| GluI | GCNGC | 2 cut(s) | 639, 1258 |
| GsaI | CCCAGC | 1 cut(s) | 638 |
| GsuI | CTGGAG | 1 cut(s) | 240 |
| HaeII | RGCGCY | 1 cut(s) | 223 |
| HaeIII | GGCC | 6 cut(s) | 1024, 1030, 1257, 1329, 1517, 3207 |
| HapII | CCGG | 4 cut(s) | 1254, 2275, 2335, 3294 |
| HhaI | GCGC | 2 cut(s) | 222, 1286 |
| Hin1I | GRCGYC | 1 cut(s) | 220 |
| Hin6I | GCGC | 2 cut(s) | 220, 1284 |
| HinP1I | GCGC | 2 cut(s) | 220, 1284 |
| HincII | GTYRAC | 3 cut(s) | 520, 1459, 3282 |
| HindII | GTYRAC | 3 cut(s) | 520, 1459, 3282 |
| HinfI | GANTC | 8 cut(s) | 233, 801, 881, 956, 971, 1142, 1772, 3308 |
| HpaI | GTTAAC | 1 cut(s) | 1459 |
| HpaII | CCGG | 4 cut(s) | 1254, 2275, 2335, 3294 |
| Hpy188I | TCNGA | 7 cut(s) | 796, 1161, 1524, 1758, 1771, 2613, 3342 |
| Hpy99I | CGWCG | 2 cut(s) | 747, 1175 |
| HpyCH4III | ACNGT | 4 cut(s) | 722, 878, 1981, 2045 |
| HpyCH4IV | ACGT | 4 cut(s) | 75, 742, 1333, 1577 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 373, 1234, 1263, 1313, 1322, 1787, 1981, 2209, 2309 |
| HpySE526I | ACGT | 4 cut(s) | 75, 742, 1333, 1577 |
| Hsp92I | GRCGYC | 1 cut(s) | 220 |
| HspAI | GCGC | 2 cut(s) | 220, 1284 |
| KasI | GGCGCC | 1 cut(s) | 219 |
| KroI | GCCGGC | 1 cut(s) | 1253 |
| KroNI | GCCGGC | 1 cut(s) | 1255 |
| Ksp22I | TGATCA | 3 cut(s) | 610, 907, 2917 |
| KspAI | GTTAAC | 1 cut(s) | 1459 |
| LguI | GCTCTTC | 2 cut(s) | 461, 2593 |
| LmnI | GCTCC | 3 cut(s) | 471, 586, 3419 |
| Lsp1109I | GCAGC | 1 cut(s) | 625 |
| LweI | GCATC | 7 cut(s) | 216, 453, 682, 1152, 1544, 1922, 2715 |
| MabI | ACCWGGT | 3 cut(s) | 2154, 2219, 2379 |
| MaeII | ACGT | 4 cut(s) | 75, 742, 1333, 1577 |
| MaeIII | GTNAC | 8 cut(s) | 157, 592, 716, 1556, 1568, 1714, 1882, 2525 |
| MfeI | CAATTG | 1 cut(s) | 1119 |
| MflI | RGATCY | 3 cut(s) | 1045, 1509, 1706 |
| MhlI | GDGCHC | 4 cut(s) | 538, 2050, 2955, 3424 |
| MlsI | TGGCCA | 1 cut(s) | 1517 |
| MluNI | TGGCCA | 1 cut(s) | 1517 |
| Mly113I | GGCGCC | 1 cut(s) | 220 |
| MlyI | GAGTC | 5 cut(s) | 890, 965, 1151, 1781, 3302 |
| MmeI | TCCRAC | 3 cut(s) | 341, 1854, 1980 |
| Mox20I | TGGCCA | 1 cut(s) | 1517 |
| Mph1103I | ATGCAT | 2 cut(s) | 1931, 1971 |
| MroNI | GCCGGC | 1 cut(s) | 1253 |
| MroXI | GAANNNNTTC | 2 cut(s) | 455, 1993 |
| MscI | TGGCCA | 1 cut(s) | 1517 |
| MseI | TTAA | 7 cut(s) | 1131, 1458, 1740, 2283, 2582, 3414, 3522 |
| MslI | CAYNNNNRTG | 5 cut(s) | 531, 603, 1964, 2097, 2402 |
| Msp20I | TGGCCA | 1 cut(s) | 1517 |
| MspA1I | CMGCKG | 2 cut(s) | 638, 1421 |
| MspI | CCGG | 4 cut(s) | 1254, 2275, 2335, 3294 |
| MspR9I | CCNGG | 8 cut(s) | 304, 530, 864, 1027, 1664, 2156, 2221, 2381 |
| MunI | CAATTG | 1 cut(s) | 1119 |
| Mva1269I | GAATGC | 2 cut(s) | 1192, 1781 |
| MvaI | CCWGG | 8 cut(s) | 304, 530, 864, 1027, 1664, 2156, 2221, 2381 |
| MvnI | CGCG | 1 cut(s) | 3351 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 373, 1234, 1263, 1313, 1322, 1787, 1981, 2209, 2309 |
| NaeI | GCCGGC | 1 cut(s) | 1255 |
| NarI | GGCGCC | 1 cut(s) | 220 |
| NcoI | CCATGG | 1 cut(s) | 1149 |
| NdeI | CATATG | 1 cut(s) | 1452 |
| NgoMIV | GCCGGC | 1 cut(s) | 1253 |
| NlaIV | GGNNCC | 8 cut(s) | 221, 308, 535, 984, 1047, 1116, 1445, 2952 |
| NmuCI | GTSAC | 5 cut(s) | 157, 716, 1568, 1714, 2525 |
| NruI | TCGCGA | 1 cut(s) | 3351 |
| NsiI | ATGCAT | 2 cut(s) | 1931, 1971 |
| NspI | RCATGY | 3 cut(s) | 857, 1850, 3465 |
| NspV | TTCGAA | 3 cut(s) | 1987, 3137, 3145 |
| OliI | CACNNNNGTG | 1 cut(s) | 531 |
| PceI | AGGCCT | 2 cut(s) | 1329, 3207 |
| PciSI | GCTCTTC | 2 cut(s) | 461, 2593 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 501, 1913 |
| PctI | GAATGC | 2 cut(s) | 1192, 1781 |
| PdiI | GCCGGC | 1 cut(s) | 1255 |
| PdmI | GAANNNNTTC | 2 cut(s) | 455, 1993 |
| PfeI | GAWTC | 3 cut(s) | 233, 801, 956 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 529, 1371 |
| PinAI | ACCGGT | 2 cut(s) | 2274, 2334 |
| PkrI | GCNGC | 2 cut(s) | 640, 1259 |
| PleI | GAGTC | 5 cut(s) | 889, 965, 1150, 1780, 3302 |
| PluTI | GGCGCC | 1 cut(s) | 223 |
| PpsI | GAGTC | 5 cut(s) | 889, 965, 1150, 1780, 3302 |
| Ppu21I | YACGTR | 2 cut(s) | 76, 1334 |
| PpuMI | RGGWCCY | 1 cut(s) | 982 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1307 |
| PsiI | TTATAA | 1 cut(s) | 1700 |
| Psp5II | RGGWCCY | 1 cut(s) | 982 |
| Psp6I | CCWGG | 8 cut(s) | 302, 528, 862, 1025, 1662, 2154, 2219, 2379 |
| PspFI | CCCAGC | 1 cut(s) | 634 |
| PspGI | CCWGG | 8 cut(s) | 302, 528, 862, 1025, 1662, 2154, 2219, 2379 |
| PspN4I | GGNNCC | 8 cut(s) | 221, 308, 535, 984, 1047, 1116, 1445, 2952 |
| PspPI | GGNCC | 3 cut(s) | 982, 1023, 1114 |
| PspPPI | RGGWCCY | 1 cut(s) | 982 |
| PstNI | CAGNNNCTG | 1 cut(s) | 968 |
| PsuI | RGATCY | 3 cut(s) | 1045, 1509, 1706 |
| PvuII | CAGCTG | 1 cut(s) | 638 |
| RruI | TCGCGA | 1 cut(s) | 3351 |
| RseI | CAYNNNNRTG | 5 cut(s) | 531, 603, 1964, 2097, 2402 |
| SapI | GCTCTTC | 2 cut(s) | 461, 2593 |
| SaqAI | TTAA | 7 cut(s) | 1131, 1458, 1740, 2283, 2582, 3414, 3522 |
| SatI | GCNGC | 2 cut(s) | 639, 1258 |
| Sau96I | GGNCC | 3 cut(s) | 982, 1023, 1114 |
| SchI | GAGTC | 5 cut(s) | 890, 965, 1151, 1781, 3302 |
| ScrFI | CCNGG | 8 cut(s) | 304, 530, 864, 1027, 1664, 2156, 2221, 2381 |
| SduI | GDGCHC | 4 cut(s) | 538, 2050, 2955, 3424 |
| SexAI | ACCWGGT | 3 cut(s) | 2154, 2219, 2379 |
| SfaNI | GCATC | 7 cut(s) | 216, 453, 682, 1152, 1544, 1922, 2715 |
| SfcI | CTRYAG | 1 cut(s) | 3435 |
| SfoI | GGCGCC | 1 cut(s) | 221 |
| SfuI | TTCGAA | 3 cut(s) | 1987, 3137, 3145 |
| SinI | GGWCC | 2 cut(s) | 982, 1114 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 531, 603, 1964, 2097, 2402 |
| SmlI | CTYRAG | 4 cut(s) | 509, 733, 1004, 3405 |
| SmoI | CTYRAG | 4 cut(s) | 509, 733, 1004, 3405 |
| SseBI | AGGCCT | 2 cut(s) | 1329, 3207 |
| SsiI | CCGC | 4 cut(s) | 1197, 1258, 1305, 1419 |
| SspDI | GGCGCC | 1 cut(s) | 219 |
| StuI | AGGCCT | 2 cut(s) | 1329, 3207 |
| StyD4I | CCNGG | 8 cut(s) | 302, 528, 862, 1025, 1662, 2154, 2219, 2379 |
| StyI | CCWWGG | 7 cut(s) | 785, 1019, 1149, 1438, 3202, 3331, 3365 |
| TaaI | ACNGT | 4 cut(s) | 722, 878, 1981, 2045 |
| TaiI | ACGT | 4 cut(s) | 78, 745, 1336, 1580 |
| TauI | GCSGC | 1 cut(s) | 1260 |
| TfiI | GAWTC | 3 cut(s) | 233, 801, 956 |
| Tru1I | TTAA | 7 cut(s) | 1131, 1458, 1740, 2283, 2582, 3414, 3522 |
| Tru9I | TTAA | 7 cut(s) | 1131, 1458, 1740, 2283, 2582, 3414, 3522 |
| TscAI | CASTG | 3 cut(s) | 2048, 2422, 3366 |
| TseFI | GTSAC | 5 cut(s) | 157, 716, 1568, 1714, 2525 |
| TseI | GCWGC | 1 cut(s) | 638 |
| Tsp45I | GTSAC | 5 cut(s) | 157, 716, 1568, 1714, 2525 |
| TspGWI | ACGGA | 1 cut(s) | 961 |
| TspRI | CASTG | 3 cut(s) | 2048, 2422, 3366 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 529, 1371 |
| VpaK11BI | GGWCC | 2 cut(s) | 982, 1114 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 152 |
| XceI | RCATGY | 3 cut(s) | 857, 1850, 3465 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2155, 2458 |
| XmaJI | CCTAGG | 2 cut(s) | 1019, 3202 |
| XmiI | GTMKAC | 1 cut(s) | 1806 |
| XmnI | GAANNNNTTC | 2 cut(s) | 455, 1993 |
| Zsp2I | ATGCAT | 2 cut(s) | 1931, 1971 |