Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0022384

Physical Location & Seq

Genomic Coordinates Forward (+)

9417197 .. 9418576

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGAGAAATATCTAATAAGTTGTGTTGTATACATATTTAGCCTTCCCAATAGTTACGTTCCACTGCAGCTCTCGTTCCAAATGTGGACTGACCAAATGCAGGAATCATTAGAACCAAAGAAAAAGGGGGATCCTGCTTTTAAGCACAAGGACTTCAGAACTGCAATTGAGTGTTATTCACAGATATGGAAGCCACGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

68

Amino Acids

8.01

Weight (kDa)

8.62

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	22 - 63	3.8e-18	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022384)

Species	Orthologous Gene IDs
malus_domestica	MD01G1057200.v1.1
pyrus_communis	pycom01g08370 pycom01g08510 pycom01g08620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	30
AclWI	GGATC	2 cut(s)	125, 138
AcuI	CTGAAG	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	100
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
AlwI	GGATC	2 cut(s)	125, 138
ApeKI	GCWGC	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	79
BfmI	CTRYAG	1 cut(s)	65
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	132
BspMAI	CTGCAG	1 cut(s)	69
BspPI	GGATC	2 cut(s)	125, 138
BssMI	GATC	1 cut(s)	130
BssNAI	GTATAC	1 cut(s)	31
Bst1107I	GTATAC	1 cut(s)	31
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BstZ17I	GTATAC	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	62
CviJI	RGCY	3 cut(s)	42, 70, 193
CviKI_1	RGCY	3 cut(s)	42, 70, 193
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	139
FaiI	YATR	3 cut(s)	31, 35, 187
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
HinfI	GANTC	1 cut(s)	104
Hpy166II	GTNNAC	2 cut(s)	31, 87
Hpy188I	TCNGA	1 cut(s)	158
Hpy8I	GTNNAC	2 cut(s)	31, 87
HpyAV	CCTTC	1 cut(s)	53
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	3 cut(s)	67, 100, 164
HpySE526I	ACGT	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	2 cut(s)	86, 147
Lsp1109I	GCAGC	1 cut(s)	79
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	130
MluCI	AATT	1 cut(s)	165
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	184
MunI	CAATTG	1 cut(s)	165
NdeII	GATC	1 cut(s)	130
NlaIV	GGNNCC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	132
PstI	CTGCAG	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	1 cut(s)	130
SetI	ASST	2 cut(s)	60, 72
SfcI	CTRYAG	1 cut(s)	65
SgeI	CNNG	4 cut(s)	85, 113, 146, 160
SmiMI	CAYNNNNRTG	1 cut(s)	184
Sse9I	AATT	1 cut(s)	165
TaiI	ACGT	1 cut(s)	60
TasI	AATT	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	69
TseI	GCWGC	1 cut(s)	67
TspRI	CASTG	1 cut(s)	69
XmiI	GTMKAC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.