Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0024609

Physical Location & Seq

Genomic Coordinates Forward (+)

11390238 .. 11390504

Gene Structure 267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCGAAATATCGAGCTGGAAGAATTCGAGAAGGCTGCAGCCGAAGGATCGGAGAAGGGAGTAAACTTTAAACTACTGGACACAACCTACCTTTCACTACTGAGACCTGATGGGCACCCAGGTCCATACAGGCAGTTCCAGCCATTTGCAAAGGATAAGAATGCCAAAGTTCAGAATGATTGCCTACATTGGTGCTTGCCCGGGCCAATAGACTCTTGGAATGATTTGGTTATGGAATTGTTAGTCAATGGTGAAAAATATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

89

Amino Acids

10.14

Weight (kDa)

5.29

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	2 - 79	1.7e-25	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0024609)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g10620 pycom13g07570
rosa_samantha	Rh6BG327700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	114
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	2 cut(s)	35, 38
ApoI	RAATTY	1 cut(s)	23
AspS9I	GGNCC	2 cut(s)	122, 203
AsuC2I	CCSGG	2 cut(s)	201, 202
AsuHPI	GGTGA	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	22, 50
BccI	CCATC	1 cut(s)	104
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BciT130I	CCWGG	1 cut(s)	120
BcnI	CCSGG	2 cut(s)	201, 202
BcoDI	GTCTC	1 cut(s)	97
BfmI	CTRYAG	1 cut(s)	36
BisI	GCNGC	2 cut(s)	36, 39
BlsI	GCNGC	2 cut(s)	37, 40
Bme1390I	CCNGG	3 cut(s)	120, 201, 202
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	122, 203
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	3 cut(s)	120, 201, 202
BpuMI	CCSGG	2 cut(s)	201, 202
Bsa29I	ATCGAT	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	118, 200
Bse1I	ACTGG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	118, 200
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	22, 50
BshFI	GGCC	1 cut(s)	205
BshNI	GGYRCC	1 cut(s)	114
BshVI	ATCGAT	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	205
Bso31I	GGTCTC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	1 cut(s)	93
BspDI	ATCGAT	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	116
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	118, 200
BssMI	GATC	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	101
BstKTI	GATC	1 cut(s)	50
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	47
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	3 cut(s)	118, 199, 200
BstSFI	CTRYAG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	22, 50
Bsu15I	ATCGAT	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	205
BsuTUI	ATCGAT	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	122, 203
Cfr9I	CCCGGG	1 cut(s)	200
ClaI	ATCGAT	1 cut(s)	262
CviJI	RGCY	5 cut(s)	16, 35, 41, 142, 205
CviKI_1	RGCY	5 cut(s)	16, 35, 41, 142, 205
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	1 cut(s)	49
DpnII	GATC	1 cut(s)	47
DraI	TTTAAA	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	200
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	118
FaiI	YATR	2 cut(s)	127, 233
Fnu4HI	GCNGC	2 cut(s)	36, 39
Fsp4HI	GCNGC	2 cut(s)	36, 39
GluI	GCNGC	2 cut(s)	36, 39
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	1 cut(s)	201
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	52, 174
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	25, 38, 49
HpyCH4V	TGCA	2 cut(s)	38, 149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	47
LpnPI	CCDG	8 cut(s)	2, 62, 105, 115, 120, 132, 152, 214
Lsp1109I	GCAGC	2 cut(s)	22, 50
MalI	GATC	1 cut(s)	49
MboI	GATC	1 cut(s)	47
MboII	GAAGA	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	2 cut(s)	23, 236
MlyI	GAGTC	1 cut(s)	206
MseI	TTAA	1 cut(s)	69
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	3 cut(s)	120, 201, 202
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	139
NciI	CCSGG	2 cut(s)	201, 202
NdeII	GATC	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	116
PctI	GAATGC	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	37, 40
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	2 cut(s)	122, 203
PstI	CTGCAG	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	2 cut(s)	36, 39
Sau3AI	GATC	1 cut(s)	47
Sau96I	GGNCC	2 cut(s)	122, 203
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	3 cut(s)	120, 201, 202
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	5 cut(s)	18, 89, 93, 109, 124
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	122
SmaI	CCCGGG	1 cut(s)	202
SrfI	GCCCGGGC	1 cut(s)	202
Sse9I	AATT	2 cut(s)	23, 236
StyD4I	CCNGG	3 cut(s)	118, 199, 200
TaqI	TCGA	3 cut(s)	12, 27, 262
TasI	AATT	2 cut(s)	23, 236
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseI	GCWGC	2 cut(s)	35, 38
TspMI	CCCGGG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	213
XmaI	CCCGGG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.