pycom13g07570

Protein ALTERED XYLOGLUCAN

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0024609
Physical Location & Seq
Forward (+)
5030522 .. 5030803
282 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g07570.1

Sequence Viewer

Length: 282 bp
ATGGATGCTGAGATGAGGCAGCTGGAGGTGGAAGAAGTAGAGGCTGCTAGGGCAAATGGTGAGAAATTTGTAGGGTTTAGGCTGGAGGCATTGGATGTGACTAAATTGTCCTTGATGAGGCCAGATGGGCATCCAGGGCCCTACATGAATAAGTTTCCATTTGCTGATGGGGTTCCTGAGAGGGTGCAGAATGATTGTGTGCATTGGTGCTTGCCAGGGCCTATTGACACATGGAATGAGATTCTGCTGGAGGTCATGAAGAAATGGAATCAGGGGAAGTGA

Protein Analysis

94

Amino Acids

10.67

Weight (kDa)

4.94

Isoelectric Point (pI)

28.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 2 - 84 1.4e-26 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024609)

Species Orthologous Gene IDs
pyrus_communis pycom01g10620 pycom13g07570
rosa_samantha Rh6BG327700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 117
AjnI CCWGG 2 cut(s) 133, 214
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
AoxI GGCC 3 cut(s) 119, 137, 218
ApaI GGGCCC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 19, 44
ApoI RAATTY 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 137, 138, 218
AsuHPI GGTGA 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 141
BanII GRGCYC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 31, 31
BccI CCATC 2 cut(s) 119, 161
BciT130I CCWGG 2 cut(s) 135, 216
BfaI CTAG 1 cut(s) 48
BglI GCCNNNNNGGC 1 cut(s) 127
BisI GCNGC 2 cut(s) 20, 45
BlsI GCNGC 2 cut(s) 21, 46
Bme1390I CCNGG 2 cut(s) 135, 216
BmgT120I GGNCC 3 cut(s) 137, 138, 218
BmiI GGNNCC 2 cut(s) 139, 174
BmrFI CCNGG 2 cut(s) 135, 216
BmsI GCATC 1 cut(s) 139
BpmI CTGGAG 3 cut(s) 44, 104, 269
BsaBI GATNNNNATC 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 134, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse8I GATNNNNATC 1 cut(s) 129
BseBI CCWGG 2 cut(s) 135, 216
BseDI CCNNGG 2 cut(s) 134, 215
BseGI GGATG 3 cut(s) 10, 100, 130
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 168
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 2 cut(s) 31, 31
BsgI GTGCAG 1 cut(s) 206
BshFI GGCC 3 cut(s) 121, 139, 220
BslI CCNNNNNNNGG 1 cut(s) 117
BsnI GGCC 3 cut(s) 121, 139, 220
Bsp120I GGGCCC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 141
BspANI GGCC 3 cut(s) 121, 139, 220
BspCNI CTCAG 1 cut(s) 169
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 139, 174
BssECI CCNNGG 2 cut(s) 134, 215
Bst2UI CCWGG 2 cut(s) 135, 216
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 9, 177
BstENI CCTNNNNNAGG 1 cut(s) 115
BstF5I GGATG 3 cut(s) 10, 100, 130
BstMWI GCNNNNNNNGC 3 cut(s) 50, 127, 136
BstNI CCWGG 2 cut(s) 135, 216
BstSCI CCNGG 2 cut(s) 133, 214
BstSLI GKGCMC 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 31, 31
BsuRI GGCC 3 cut(s) 121, 139, 220
BtsCI GGATG 3 cut(s) 10, 100, 130
Cac8I GCNNGC 1 cut(s) 212
CciI TCATGA 1 cut(s) 255
Cfr13I GGNCC 3 cut(s) 137, 138, 218
CviAII CATG 3 cut(s) 145, 231, 256
CviJI RGCY 6 cut(s) 22, 44, 82, 121, 139, 220
CviKI_1 RGCY 6 cut(s) 22, 44, 82, 121, 139, 220
DdeI CTNAG 2 cut(s) 9, 177
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 141
EcoNI CCTNNNNNAGG 1 cut(s) 115
EcoO109I RGGNCCY 3 cut(s) 137, 138, 218
EcoRII CCWGG 2 cut(s) 133, 214
EcoT38I GRGCYC 1 cut(s) 141
FaeI CATG 3 cut(s) 148, 234, 259
FaiI YATR 3 cut(s) 146, 232, 257
FatI CATG 3 cut(s) 144, 230, 255
Fnu4HI GCNGC 2 cut(s) 20, 45
FokI GGATG 3 cut(s) 17, 107, 117
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 2 cut(s) 20, 45
FspBI CTAG 1 cut(s) 48
GluI GCNGC 2 cut(s) 20, 45
GsuI CTGGAG 3 cut(s) 44, 104, 269
HaeIII GGCC 3 cut(s) 121, 139, 220
Hin1II CATG 3 cut(s) 148, 234, 259
HinfI GANTC 2 cut(s) 241, 268
HphI GGTGA 1 cut(s) 71
Hpy188III TCNNGA 2 cut(s) 176, 256
HpyCH4V TGCA 2 cut(s) 187, 202
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 127, 136
HpyF3I CTNAG 2 cut(s) 9, 177
Hsp92II CATG 3 cut(s) 148, 234, 259
Lsp1109I GCAGC 2 cut(s) 31, 31
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 97
MboII GAAGA 2 cut(s) 44, 271
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 2 cut(s) 65, 104
MnlI CCTC 7 cut(s) 9, 19, 34, 79, 111, 174, 244
MspA1I CMGCKG 1 cut(s) 22
MspR9I CCNGG 2 cut(s) 135, 216
MvaI CCWGG 2 cut(s) 135, 216
MwoI GCNNNNNNNGC 3 cut(s) 50, 127, 136
NlaIII CATG 3 cut(s) 148, 234, 259
NlaIV GGNNCC 2 cut(s) 139, 174
NmuCI GTSAC 1 cut(s) 97
PagI TCATGA 1 cut(s) 255
PfeI GAWTC 2 cut(s) 241, 268
PkrI GCNGC 2 cut(s) 21, 46
Psp6I CCWGG 2 cut(s) 133, 214
PspGI CCWGG 2 cut(s) 133, 214
PspN4I GGNNCC 2 cut(s) 139, 174
PspOMI GGGCCC 1 cut(s) 137
PspPI GGNCC 3 cut(s) 137, 138, 218
PvuII CAGCTG 1 cut(s) 22
SatI GCNGC 2 cut(s) 20, 45
Sau96I GGNCC 3 cut(s) 137, 138, 218
ScrFI CCNGG 2 cut(s) 135, 216
SduI GDGCHC 1 cut(s) 141
SetI ASST 3 cut(s) 24, 30, 255
SfaNI GCATC 1 cut(s) 139
Sse9I AATT 2 cut(s) 65, 104
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 2 cut(s) 133, 214
TasI AATT 2 cut(s) 65, 104
TfiI GAWTC 2 cut(s) 241, 268
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 2 cut(s) 19, 44
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 2 cut(s) 161, 272
XagI CCTNNNNNAGG 1 cut(s) 115
XapI RAATTY 1 cut(s) 65
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.