pycom01g11390

Leucine Rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0007885
Physical Location & Seq
Forward (+)
12402475 .. 12403288
814 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11390.3

Sequence Viewer

Length: 420 bp
ATGGGCTCCACTTCCGCCATCTCTCTCTGGTCTCATCCCAAGATTTTACTGCGGTCTCAAAGGTTTAGGAGTGCTTTTCTGGGCTATCGTGGGCTGGGCGTGGTTTTACTTGCTATCCTACCGCGAAGGAGGAGATGCTTAGCGGTAAAAGCCGCTTCTAGGCCATCCGGTGTTCGAAGAGTGTACAGAGAATCGCAGAACGGAGGCTCATTGTCTGTTGCTCCTGTCAAGCAGCTTGCTTCCTTCGTTGTTCCCGCCGCCTCCTTCTTGGCCGTCACTTTTGATTTCTTGACTGATAAATGTGGATGGGTTAATTGGTATCTTGTGGGAAAATTTGTGAAGAAATATTTTTATGCATTGGAACTATTTGAGAAAATGTCTGAGAAAGGTAGTGAAGACAAAATGGAAATATCTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

140

Amino Acids

15.64

Weight (kDa)

10.28

Isoelectric Point (pI)

65.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 124
AciI CCGC 7 cut(s) 15, 52, 122, 143, 153, 255, 258
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 332
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 159
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 36, 60
AoxI GGCC 2 cut(s) 161, 270
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 1 cut(s) 332
AsuII TTCGAA 1 cut(s) 175
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 244
BccI CCATC 3 cut(s) 26, 172, 300
BceAI ACGGC 1 cut(s) 257
BcoDI GTCTC 2 cut(s) 36, 60
BfaI CTAG 2 cut(s) 159, 418
BisI GCNGC 3 cut(s) 153, 233, 258
BlpI GCTNAGC 1 cut(s) 139
BlsI GCNGC 3 cut(s) 154, 234, 259
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 125
BpiI GAAGAC 1 cut(s) 402
Bpu1102I GCTNAGC 1 cut(s) 139
Bpu14I TTCGAA 1 cut(s) 175
BsaI GGTCTC 2 cut(s) 36, 60
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 159
BseGI GGATG 3 cut(s) 34, 164, 311
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 372
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 244
BseYI CCCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 124
BshFI GGCC 2 cut(s) 163, 272
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 2 cut(s) 36, 60
BsnI GGCC 2 cut(s) 163, 272
Bso31I GGTCTC 2 cut(s) 36, 60
Bsp119I TTCGAA 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 183
Bsp1720I GCTNAGC 1 cut(s) 139
BspACI CCGC 7 cut(s) 15, 52, 122, 143, 153, 255, 258
BspANI GGCC 2 cut(s) 163, 272
BspCNI CTCAG 1 cut(s) 373
BspFNI CGCG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 7
BspT104I TTCGAA 1 cut(s) 175
BspTNI GGTCTC 2 cut(s) 36, 60
BsrGI TGTACA 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 172
BstAUI TGTACA 1 cut(s) 183
BstBI TTCGAA 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 139, 381
BstF5I GGATG 3 cut(s) 34, 164, 311
BstFNI CGCG 1 cut(s) 124
BstMAI GTCTC 2 cut(s) 36, 60
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 402
BsuRI GGCC 2 cut(s) 163, 272
BtsCI GGATG 3 cut(s) 34, 164, 311
Cac8I GCNNGC 1 cut(s) 237
Csp6I GTAC 1 cut(s) 184
CviJI RGCY 8 cut(s) 6, 84, 94, 152, 163, 207, 235, 272
CviKI_1 RGCY 8 cut(s) 6, 84, 94, 152, 163, 207, 235, 272
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 2 cut(s) 139, 381
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
EciI GGCGGA 1 cut(s) 4
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 2 cut(s) 36, 60
EcoT22I ATGCAT 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 8
FaiI YATR 1 cut(s) 354
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 153, 233, 258
FokI GGATG 3 cut(s) 21, 151, 318
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 153, 233, 258
FspBI CTAG 2 cut(s) 159, 418
GluI GCNGC 3 cut(s) 153, 233, 258
GsaI CCCAGC 1 cut(s) 98
HaeIII GGCC 2 cut(s) 163, 272
HapII CCGG 1 cut(s) 168
HinfI GANTC 1 cut(s) 191
HpaII CCGG 1 cut(s) 168
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 3 cut(s) 120, 253, 274
HpyCH4V TGCA 1 cut(s) 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 139, 381
LmnI GCTCC 2 cut(s) 11, 226
LpnPI CCDG 5 cut(s) 13, 65, 80, 181, 237
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 125
MaeI CTAG 2 cut(s) 159, 418
MaeIII GTNAC 1 cut(s) 274
MboII GAAGA 3 cut(s) 189, 352, 407
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 313, 332
MnlI CCTC 3 cut(s) 123, 197, 271
Mph1103I ATGCAT 1 cut(s) 358
MseI TTAA 1 cut(s) 312
MspI CCGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 274
NsiI ATGCAT 1 cut(s) 358
NspV TTCGAA 1 cut(s) 175
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 3 cut(s) 154, 234, 259
PspFI CCCAGC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 7
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 3 cut(s) 153, 233, 258
SduI GDGCHC 1 cut(s) 8
SetI ASST 3 cut(s) 65, 237, 391
SfaNI GCATC 1 cut(s) 125
SfuI TTCGAA 1 cut(s) 175
Sse9I AATT 2 cut(s) 313, 332
SsiI CCGC 7 cut(s) 15, 52, 122, 143, 153, 255, 258
SspI AATATT 1 cut(s) 347
SspMI CTAG 2 cut(s) 159, 418
TaqI TCGA 1 cut(s) 175
TasI AATT 2 cut(s) 313, 332
TatI WGTACW 1 cut(s) 183
TauI GCSGC 2 cut(s) 155, 260
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 274
TspGWI ACGGA 1 cut(s) 216
XapI RAATTY 1 cut(s) 332
XspI CTAG 2 cut(s) 159, 418
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.