Rorug04G0354300

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001837
Physical Location & Seq
Forward (+)
52654557 .. 52659354
4798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0354300.1

Sequence Viewer

Length: 1122 bp
ATGGACGGCTCACAGGACGGAAGTAAGCCACCGCCGCAAACGCCGAGCACGGCCAACGGGAACGGCGTCGCTTCGATGATGAGGCTGAGACTGAAGCCGGAGAAGGAGCACAAGTCGGATAGCTACCAGGACCTGCAGCAATTGGAATTCAGTCCTCTGCTGTTCAGCTCGCTCGAGCATTACTTGCCGGCGAACATGCTCAATGTGCCTCGTGAGCTCAAGCTCCGGTACATGAGGGAGATTCTTCTCCGGTATTCCACCGAGGGCGAACGCACTCGTATTCAGCGGCATAGAGAATACAGAGAGAGGATCACATCAAACTATCAGTCTCTCCACGAGCAGTTATACACTATGCAAGCTGAACAGTTCTTTGTCCCCTCATTTCTCAATGCCGTCAATGAGGGTACAGAGGATAGTTTTAGAAGTATAATGGCAGAACCCTCTCCTGGAGTCTTCACATTTGAAATGCTTCAGCCGCAGTTCTGCGAATTGTTAGTATCAGAGGTTGAGAATTTTGAAAGATGGGTCCATGAGACAAGATTCAGAATCATGCGACCAAACACAATGAACAAATATGGTGCTGTTCTTGATGACTTTGGCTTCGAAACTATGCTTGACAAGTTGATGGAGGAGTTTATACGCCCTATATCTAGAGTTCTCTTTCCAGAAGTTGGTGGAGCCACTTTGGATTCTCATCATGGTTTTGTAGTTGAATATGGAATCGATAGGGACGTAGAGCTTGGTTTTCATGTGGATGACGCAGAAGTCACCTTGAATGTTTGCTTGGGTAAGCAATTTACTGGTGGGGAGTTGTATTTTCGAGGTGTTCGATGTGATAAGCATGTTAATTCAGAGACACTCTCAGAGGAAGTCTTTGATTATCCTCATGTTCCCGGATATGCGGTTCTTCATCGTGGTCGCCACCGACATGGTGCTAGAGCTACAATATCTGGGCGTCGAGTCAACTTACTACTATGGTGCAGAAGTTCGGTCTTCAGAGAGCTGAGAAAATATCAGAAAGATTGTTCTAACTGGTGCGGAGACTGCCATCGTGAGAAGAAAGAAAGACAACGTCAATCAGTTGCTGCCACCAAACTGGAATTACTTAACAAAGATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009072 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032787 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042445 GO:0042537 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045229 GO:0046482 GO:0046527 GO:0047251 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051179 GO:0051239 GO:0051240 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:0098542 GO:1900140 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901657 GO:1901659 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

373

Amino Acids

43.4

Weight (kDa)

6.29

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OGFOD2-like PF25238 104 - 226 8.4e-57 OGFOD2-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 764
Acc36I ACCTGC 1 cut(s) 141
AccB7I CCANNNNNTGG 1 cut(s) 671
AciI CCGC 6 cut(s) 32, 35, 286, 476, 902, 1038
AclWI GGATC 1 cut(s) 317
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 2 cut(s) 146, 511
AcuI CTGAAG 3 cut(s) 113, 455, 979
AcyI GRCGYC 2 cut(s) 66, 955
AfaI GTAC 2 cut(s) 230, 406
AfiI CCNNNNNNNGG 2 cut(s) 446, 671
AgsI TTSAA 4 cut(s) 464, 518, 713, 775
AjnI CCWGG 2 cut(s) 126, 445
AjuI GAANNNNNNNTTGG 2 cut(s) 767, 799
AloI GAACNNNNNNTCC 2 cut(s) 888, 920
AluBI AGCT 8 cut(s) 123, 168, 217, 223, 359, 739, 941, 1003
AluI AGCT 8 cut(s) 123, 168, 217, 223, 359, 739, 941, 1003
Alw21I GWGCWC 3 cut(s) 50, 111, 219
Alw26I GTCTC 5 cut(s) 82, 333, 527, 848, 1035
AlwI GGATC 1 cut(s) 317
AlwNI CAGNNNCTG 2 cut(s) 133, 1085
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 136, 1085
ApoI RAATTY 2 cut(s) 146, 511
ArsI GACNNNNNNTTYG 4 cut(s) 311, 343, 584, 616
Asp700I GAANNNNTTC 1 cut(s) 468
AspS9I GGNCC 2 cut(s) 130, 526
AsuC2I CCSGG 1 cut(s) 894
AsuHPI GGTGA 1 cut(s) 760
AsuII TTCGAA 1 cut(s) 603
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 2 cut(s) 130, 526
BanII GRGCYC 1 cut(s) 219
BauI CACGAG 2 cut(s) 210, 335
BbsI GAAGAC 2 cut(s) 445, 985
Bbv12I GWGCWC 3 cut(s) 50, 111, 219
BbvI GCAGC 2 cut(s) 148, 1072
BccI CCATC 4 cut(s) 516, 619, 1056, 1109
BceAI ACGGC 4 cut(s) 22, 66, 79, 377
BciT130I CCWGG 2 cut(s) 128, 447
BcnI CCSGG 1 cut(s) 894
BcoDI GTCTC 5 cut(s) 82, 333, 527, 848, 1035
BfaI CTAG 2 cut(s) 651, 936
BfmI CTRYAG 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 141
BisI GCNGC 5 cut(s) 35, 137, 287, 476, 1086
BlsI GCNGC 5 cut(s) 36, 138, 288, 477, 1087
Bme1390I CCNGG 3 cut(s) 128, 447, 894
Bme18I GGWCC 2 cut(s) 130, 526
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 130, 526
BmiI GGNNCC 2 cut(s) 527, 679
BmrFI CCNGG 3 cut(s) 128, 447, 894
BpiI GAAGAC 2 cut(s) 445, 985
BplI GAGNNNNNCTC 2 cut(s) 845, 877
BpmI CTGGAG 1 cut(s) 468
Bpu14I TTCGAA 1 cut(s) 603
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 894
Bsa29I ATCGAT 1 cut(s) 723
BsaBI GATNNNNATC 1 cut(s) 693
BsaHI GRCGYC 2 cut(s) 66, 955
BsaJI CCNNGG 1 cut(s) 261
BsaWI WCCGGW 2 cut(s) 225, 249
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 446, 671
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 3 cut(s) 805, 1037, 1101
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 2 cut(s) 128, 447
BseCI ATCGAT 1 cut(s) 723
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 760
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 2 cut(s) 446, 671
BseMII CTCAG 3 cut(s) 77, 876, 995
BseNI ACTGG 3 cut(s) 805, 1037, 1101
BseRI GAGGAG 1 cut(s) 644
BseXI GCAGC 2 cut(s) 148, 1072
BsgI GTGCAG 1 cut(s) 1000
BshFI GGCC 1 cut(s) 53
BshVI ATCGAT 1 cut(s) 723
BsiHKAI GWGCWC 3 cut(s) 50, 111, 219
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 5 cut(s) 98, 188, 226, 250, 894
BslFI GGGAC 2 cut(s) 359, 743
BslI CCNNNNNNNGG 2 cut(s) 446, 671
BsmAI GTCTC 5 cut(s) 82, 333, 527, 848, 1035
BsmFI GGGAC 2 cut(s) 359, 743
BsnI GGCC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 173
Bsp119I TTCGAA 1 cut(s) 603
Bsp1286I GDGCHC 3 cut(s) 50, 111, 219
Bsp143I GATC 1 cut(s) 309
BspACI CCGC 6 cut(s) 32, 35, 286, 476, 902, 1038
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 3 cut(s) 78, 875, 996
BspDI ATCGAT 1 cut(s) 723
BspLI GGNNCC 2 cut(s) 527, 679
BspMAI CTGCAG 1 cut(s) 138
BspMI ACCTGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 317
BspT104I TTCGAA 1 cut(s) 603
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 3 cut(s) 805, 1037, 1101
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 309
BssNI GRCGYC 2 cut(s) 66, 955
BssSI CACGAG 2 cut(s) 210, 335
Bst2BI CACGAG 2 cut(s) 210, 335
Bst2UI CCWGG 2 cut(s) 128, 447
Bst4CI ACNGT 1 cut(s) 366
BstACI GRCGYC 2 cut(s) 66, 955
BstAPI GCANNNNNTGC 1 cut(s) 184
BstBI TTCGAA 1 cut(s) 603
BstC8I GCNNGC 3 cut(s) 170, 189, 357
BstDEI CTNAG 3 cut(s) 86, 862, 1004
BstF5I GGATG 1 cut(s) 760
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 5 cut(s) 82, 333, 527, 848, 1035
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 7 cut(s) 34, 40, 184, 205, 214, 475, 1044
BstNI CCWGG 2 cut(s) 128, 447
BstNSI RCATGY 2 cut(s) 199, 845
BstSCI CCNGG 3 cut(s) 126, 445, 892
BstSFI CTRYAG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 148, 1072
BstV2I GAAGAC 2 cut(s) 445, 985
BstXI CCANNNNNNTGG 2 cut(s) 929, 1096
Bsu15I ATCGAT 1 cut(s) 723
BsuRI GGCC 1 cut(s) 53
BsuTUI ATCGAT 1 cut(s) 723
BtsCI GGATG 1 cut(s) 760
BveI ACCTGC 1 cut(s) 141
Cac8I GCNNGC 3 cut(s) 170, 189, 357
CaiI CAGNNNCTG 2 cut(s) 133, 1085
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 2 cut(s) 130, 526
ClaI ATCGAT 1 cut(s) 723
CseI GACGC 3 cut(s) 55, 767, 944
Csp6I GTAC 2 cut(s) 229, 405
CviAII CATG 9 cut(s) 196, 232, 530, 550, 698, 749, 842, 887, 929
CviQI GTAC 2 cut(s) 229, 405
DdeI CTNAG 3 cut(s) 86, 862, 1004
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
DrdI GACNNNNNNGTC 1 cut(s) 764
DseDI GACNNNNNNGTC 1 cut(s) 764
EaeI YGGCCR 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 130, 526
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 3 cut(s) 113, 455, 979
Eco88I CYCGRG 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 126, 445
EcoT38I GRGCYC 1 cut(s) 219
FaeI CATG 9 cut(s) 199, 235, 533, 553, 701, 752, 845, 890, 932
FaqI GGGAC 2 cut(s) 359, 743
FatI CATG 9 cut(s) 195, 231, 529, 549, 697, 748, 841, 886, 928
Fnu4HI GCNGC 5 cut(s) 35, 137, 287, 476, 1086
FokI GGATG 1 cut(s) 767
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 5 cut(s) 35, 137, 287, 476, 1086
FspBI CTAG 2 cut(s) 651, 936
GluI GCNGC 5 cut(s) 35, 137, 287, 476, 1086
GsuI CTGGAG 1 cut(s) 468
HaeIII GGCC 1 cut(s) 53
HapII CCGG 5 cut(s) 98, 188, 226, 250, 894
HgaI GACGC 3 cut(s) 55, 767, 944
Hin1I GRCGYC 2 cut(s) 66, 955
Hin1II CATG 9 cut(s) 199, 235, 533, 553, 701, 752, 845, 890, 932
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HinfI GANTC 7 cut(s) 241, 450, 540, 546, 689, 720, 960
HpaII CCGG 5 cut(s) 98, 188, 226, 250, 894
HphI GGTGA 1 cut(s) 760
Hpy166II GTNNAC 1 cut(s) 964
Hpy188I TCNGA 7 cut(s) 118, 502, 545, 853, 865, 998, 1017
Hpy188III TCNNGA 5 cut(s) 212, 587, 651, 665, 1052
Hpy8I GTNNAC 1 cut(s) 964
Hpy99I CGWCG 2 cut(s) 71, 960
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 366
HpyCH4IV ACGT 2 cut(s) 732, 1072
HpyCH4V TGCA 3 cut(s) 136, 355, 981
HpyF10VI GCNNNNNNNGC 7 cut(s) 34, 40, 184, 205, 214, 475, 1044
HpyF3I CTNAG 3 cut(s) 86, 862, 1004
HpySE526I ACGT 2 cut(s) 732, 1072
Hsp92I GRCGYC 2 cut(s) 66, 955
Hsp92II CATG 9 cut(s) 199, 235, 533, 553, 701, 752, 845, 890, 932
KroI GCCGGC 1 cut(s) 187
KroNI GCCGGC 1 cut(s) 189
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 3 cut(s) 106, 228, 677
Lsp1109I GCAGC 2 cut(s) 148, 1072
MaeI CTAG 2 cut(s) 651, 936
MaeII ACGT 2 cut(s) 732, 1072
MaeIII GTNAC 1 cut(s) 766
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MboII GAAGA 5 cut(s) 236, 445, 899, 985, 1069
MfeI CAATTG 1 cut(s) 140
MhlI GDGCHC 3 cut(s) 50, 111, 219
MluCI AATT 7 cut(s) 140, 146, 488, 511, 794, 847, 1100
MlyI GAGTC 2 cut(s) 459, 969
MmeI TCCRAC 1 cut(s) 96
MroNI GCCGGC 1 cut(s) 187
MroXI GAANNNNTTC 1 cut(s) 468
MseI TTAA 2 cut(s) 846, 1107
MslI CAYNNNNRTG 2 cut(s) 753, 927
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 5 cut(s) 98, 188, 226, 250, 894
MspR9I CCNGG 3 cut(s) 128, 447, 894
MunI CAATTG 1 cut(s) 140
MvaI CCWGG 2 cut(s) 128, 447
MwoI GCNNNNNNNGC 7 cut(s) 34, 40, 184, 205, 214, 475, 1044
NaeI GCCGGC 1 cut(s) 189
NciI CCSGG 1 cut(s) 894
NdeII GATC 1 cut(s) 309
NgoMIV GCCGGC 1 cut(s) 187
NlaIII CATG 9 cut(s) 199, 235, 533, 553, 701, 752, 845, 890, 932
NlaIV GGNNCC 2 cut(s) 527, 679
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 766
NspI RCATGY 2 cut(s) 199, 845
NspV TTCGAA 1 cut(s) 603
PaeR7I CTCGAG 1 cut(s) 173
PcsI WCGNNNNNNNCGW 3 cut(s) 63, 729, 826
PdiI GCCGGC 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 5 cut(s) 241, 540, 546, 689, 720
PflFI GACNNNGTC 1 cut(s) 1071
PflMI CCANNNNNTGG 1 cut(s) 671
PfoI TCCNGGA 2 cut(s) 445, 892
PkrI GCNGC 5 cut(s) 36, 138, 288, 477, 1087
PleI GAGTC 2 cut(s) 458, 968
PpsI GAGTC 2 cut(s) 458, 968
PpuMI RGGWCCY 1 cut(s) 130
Psp124BI GAGCTC 1 cut(s) 219
Psp5II RGGWCCY 1 cut(s) 130
Psp6I CCWGG 2 cut(s) 126, 445
PspGI CCWGG 2 cut(s) 126, 445
PspN4I GGNNCC 2 cut(s) 527, 679
PspPI GGNCC 2 cut(s) 130, 526
PspPPI RGGWCCY 1 cut(s) 130
PspXI VCTCGAGB 1 cut(s) 173
PstI CTGCAG 1 cut(s) 138
PstNI CAGNNNCTG 2 cut(s) 133, 1085
PsyI GACNNNGTC 1 cut(s) 1071
RsaI GTAC 2 cut(s) 230, 406
RsaNI GTAC 2 cut(s) 229, 405
RseI CAYNNNNRTG 2 cut(s) 753, 927
SacI GAGCTC 1 cut(s) 219
SaqAI TTAA 2 cut(s) 846, 1107
SatI GCNGC 5 cut(s) 35, 137, 287, 476, 1086
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 2 cut(s) 130, 526
SchI GAGTC 2 cut(s) 459, 969
ScrFI CCNGG 3 cut(s) 128, 447, 894
SduI GDGCHC 3 cut(s) 50, 111, 219
SfcI CTRYAG 1 cut(s) 134
Sfr274I CTCGAG 1 cut(s) 173
SfuI TTCGAA 1 cut(s) 603
SinI GGWCC 2 cut(s) 130, 526
SlaI CTCGAG 1 cut(s) 173
SmiMI CAYNNNNRTG 2 cut(s) 753, 927
SmlI CTYRAG 2 cut(s) 173, 218
SmoI CTYRAG 2 cut(s) 173, 218
Sse9I AATT 7 cut(s) 140, 146, 488, 511, 794, 847, 1100
SsiI CCGC 6 cut(s) 32, 35, 286, 476, 902, 1038
SspMI CTAG 2 cut(s) 651, 936
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 3 cut(s) 126, 445, 892
TaaI ACNGT 1 cut(s) 366
TaiI ACGT 2 cut(s) 735, 1075
TaqI TCGA 7 cut(s) 74, 174, 603, 723, 820, 829, 958
TaqII GACCGA 1 cut(s) 979
TasI AATT 7 cut(s) 140, 146, 488, 511, 794, 847, 1100
TauI GCSGC 3 cut(s) 37, 289, 478
TfiI GAWTC 5 cut(s) 241, 540, 546, 689, 720
Tru1I TTAA 2 cut(s) 846, 1107
Tru9I TTAA 2 cut(s) 846, 1107
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 2 cut(s) 136, 1085
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 3 cut(s) 581, 737, 899
TspGWI ACGGA 1 cut(s) 33
Tth111I GACNNNGTC 1 cut(s) 1071
Van91I CCANNNNNTGG 1 cut(s) 671
VpaK11BI GGWCC 2 cut(s) 130, 526
XapI RAATTY 2 cut(s) 146, 511
XbaI TCTAGA 1 cut(s) 650
XceI RCATGY 2 cut(s) 199, 845
XhoI CTCGAG 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 2 cut(s) 651, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.