Rmu_sc0017035.1_g000003

ribosomal protein L4

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017035.1
Physical Location & Seq
Reverse (-)
24979 .. 26475
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017035.1_g000003.1.cds

Sequence Viewer

Length: 1497 bp
atgtcagatccttattttgttggccgctttttgtggctacagagaaataaccaaaccctaatacctggcactattataagtactaaggccgaagaacttaccacaaacgacgtgctggcaagattaaggaatttcttcaaactcaagaagaagaaattacaagtgctagctacatggaatgacttggttctctgctgcacagtcagcggaggctattgctattactacgtctgcaatccacggaccatgcaactggttcatcttcctcgcatcgctcaatgccctggtctccctgatatattcgactttcagcctgtgggattcatctgtgagccctacaataaggaagacagggtcgtcgtccacagtgatcaacaacaagaacaaaaagaagaaaggaaggtaattaaaattaatgcagagtacaagtgtaaggttgtcagaattcttcctcctcatgagacaataaaaccttgtttcgaattcaagattcaggtattctctagtgagactggtgaatggagagaatcactagtggcatgtccacaaggctttatttataaacaactcggggatgtatctgtctgtgctaccaatggcatgctatattggaataatgctgactatggtgatctgctcgtgctggaaccgttgatcaacaacaagagtactactactactgccaatgatgattctggctatcaatttcgtgttattaaatatgttcaggaagatgatgttccttatcctcatcagccattttcgccttataaccttggcgggcagcagggacgtctgctgttggtgcgtgcagtggcgaatggattccccgacatgggcgctaggctattcatttgggagttggatcaagaaaggggtggagaactctgtcgtcggaggacttacaacgtactggacaaagaatttcttggtttagagactggggtgtcttgtataggtttcgaccaaaatgatttggatatatgttatgtacttgtatgtaatcatgatgaactagaaggcgttcacaagtacaaccttcacacagggaaacggtccatgataaacaaagaattttatgggtgcgcattacaagttatgcttccgtggtggtcagttcctacaatatccgatcccatgccggataggaataccgagatcaacggaagtgaggaagaaggtgccgggctcagatatatagcaagatcaaaagtgaagaaaaccaaagatgtggatggtgttgtgaatggagaggagggtgcggattttcaagctccaaggttgagtggtagaaagcacggcattgatgtggagaagagtggtgcaacaaagaggttcaaggcgatggatgtagtagtcccagctaatgctcctaaggaagtgcatgcttcaaatcccacttcgtccaaggtatcacgagaaaccaccacacgagaaattcttcatcatgcttttggaaacatgccaatattccttaaaaatgcttcaagttcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

498

Amino Acids

56.46

Weight (kDa)

6.61

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 77, 561, 771
AasI GACNNNNNNGTC 2 cut(s) 356, 946
AatII GACGTC 1 cut(s) 796
Acc16I TGCGCA 1 cut(s) 1087
AccB1I GGYRCC 1 cut(s) 1181
AciI CCGC 4 cut(s) 25, 207, 780, 1262
AclWI GGATC 3 cut(s) 2, 873, 1127
AcoI YGGCCR 1 cut(s) 22
AcsI RAATTY 6 cut(s) 130, 444, 482, 923, 1073, 1437
AcyI GRCGYC 1 cut(s) 793
AfaI GTAC 6 cut(s) 82, 425, 670, 912, 993, 1034
AfiI CCNNNNNNNGG 2 cut(s) 835, 836
AgsI TTSAA 6 cut(s) 139, 487, 1271, 1339, 1392, 1488
AhlI ACTAGT 1 cut(s) 532
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 2 cut(s) 64, 283
AluBI AGCT 3 cut(s) 170, 1274, 1364
AluI AGCT 3 cut(s) 170, 1274, 1364
Alw26I GTCTC 4 cut(s) 293, 455, 503, 932
AlwI GGATC 3 cut(s) 2, 873, 1127
Ama87I CYCGRG 1 cut(s) 569
AoxI GGCC 2 cut(s) 22, 87
ApeKI GCWGC 2 cut(s) 195, 784
ApoI RAATTY 6 cut(s) 130, 444, 482, 923, 1073, 1437
AseI ATTAAT 1 cut(s) 414
Asp700I GAANNNNTTC 4 cut(s) 134, 824, 1023, 1440
AspLEI GCGC 2 cut(s) 842, 1088
AspS9I GGNCC 2 cut(s) 243, 1056
AsuC2I CCSGG 1 cut(s) 1186
AsuHPI GGTGA 2 cut(s) 527, 641
AsuII TTCGAA 1 cut(s) 480
AsuNHI GCTAGC 1 cut(s) 166
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 2 cut(s) 243, 1056
AxyI CCTNAGG 1 cut(s) 1374
BanI GGYRCC 1 cut(s) 1181
BanII GRGCYC 2 cut(s) 336, 1191
BauI CACGAG 3 cut(s) 638, 1416, 1431
BbsI GAAGAC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 182, 796
BccI CCATC 2 cut(s) 1229, 1339
BceAI ACGGC 1 cut(s) 1315
BciT130I CCWGG 2 cut(s) 66, 285
BclI TGATCA 2 cut(s) 370, 654
BcnI CCSGG 1 cut(s) 1186
BcoDI GTCTC 4 cut(s) 293, 455, 503, 932
BcuI ACTAGT 1 cut(s) 532
BfaI CTAG 5 cut(s) 167, 504, 533, 843, 1016
BfmI CTRYAG 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 843
BisI GCNGC 3 cut(s) 25, 196, 785
BlsI GCNGC 3 cut(s) 26, 197, 786
BmcAI AGTACT 2 cut(s) 82, 670
Bme1390I CCNGG 3 cut(s) 66, 285, 1186
Bme18I GGWCC 2 cut(s) 243, 1056
BmeT110I CYCGRG 1 cut(s) 569
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 243, 1056
BmiI GGNNCC 2 cut(s) 648, 1183
BmrFI CCNGG 3 cut(s) 66, 285, 1186
BmrI ACTGGG 1 cut(s) 951
BmsI GCATC 1 cut(s) 279
BmtI GCTAGC 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 951
BpiI GAAGAC 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 1186
BsaHI GRCGYC 1 cut(s) 793
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 6 cut(s) 239, 283, 775, 1106, 1277, 1407
Bsc4I CCNNNNNNNGG 2 cut(s) 835, 836
Bse1I ACTGG 4 cut(s) 258, 517, 918, 946
Bse21I CCTNAGG 1 cut(s) 1374
BseBI CCWGG 2 cut(s) 66, 285
BseDI CCNNGG 6 cut(s) 239, 283, 775, 1106, 1277, 1407
BseGI GGATG 3 cut(s) 580, 1240, 1354
BseLI CCNNNNNNNGG 2 cut(s) 835, 836
BseMII CTCAG 1 cut(s) 1204
BseNI ACTGG 4 cut(s) 258, 517, 918, 946
BseRI GAGGAG 2 cut(s) 444, 1268
BseXI GCAGC 2 cut(s) 182, 796
BseYI CCCAGC 1 cut(s) 1360
BsgI GTGCAG 2 cut(s) 181, 831
BshFI GGCC 2 cut(s) 24, 89
BshNI GGYRCC 1 cut(s) 1181
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 2 cut(s) 1142, 1185
BslFI GGGAC 2 cut(s) 804, 1343
BslI CCNNNNNNNGG 2 cut(s) 835, 836
BsmAI GTCTC 4 cut(s) 293, 455, 503, 932
BsmFI GGGAC 2 cut(s) 804, 1343
BsnI GGCC 2 cut(s) 24, 89
Bso31I GGTCTC 1 cut(s) 293
BsoBI CYCGRG 1 cut(s) 569
Bsp119I TTCGAA 1 cut(s) 480
Bsp1286I GDGCHC 2 cut(s) 336, 1191
Bsp143I GATC 8 cut(s) 7, 370, 631, 654, 865, 1132, 1158, 1205
BspACI CCGC 4 cut(s) 25, 207, 780, 1262
BspANI GGCC 2 cut(s) 24, 89
BspCNI CTCAG 1 cut(s) 1203
BspHI TCATGA 2 cut(s) 457, 1006
BspLI GGNNCC 2 cut(s) 648, 1183
BspOI GCTAGC 1 cut(s) 170
BspPI GGATC 3 cut(s) 2, 873, 1127
BspT104I TTCGAA 1 cut(s) 480
BspT107I GGYRCC 1 cut(s) 1181
BspTNI GGTCTC 1 cut(s) 293
BsrI ACTGG 4 cut(s) 258, 517, 918, 946
BssECI CCNNGG 6 cut(s) 239, 283, 775, 1106, 1277, 1407
BssMI GATC 8 cut(s) 7, 370, 631, 654, 865, 1132, 1158, 1205
BssNI GRCGYC 1 cut(s) 793
BssSI CACGAG 3 cut(s) 638, 1416, 1431
BssT1I CCWWGG 3 cut(s) 775, 1277, 1407
Bst2BI CACGAG 3 cut(s) 638, 1416, 1431
Bst2UI CCWGG 2 cut(s) 66, 285
Bst4CI ACNGT 4 cut(s) 202, 368, 651, 1056
Bst6I CTCTTC 1 cut(s) 1310
BstACI GRCGYC 1 cut(s) 793
BstBI TTCGAA 1 cut(s) 480
BstC8I GCNNGC 6 cut(s) 117, 168, 602, 782, 810, 1386
BstDEI CTNAG 3 cut(s) 84, 1190, 1374
BstDSI CCRYGG 2 cut(s) 239, 1106
BstF5I GGATG 3 cut(s) 580, 1240, 1354
BstH2I RGCGCY 1 cut(s) 843
BstHHI GCGC 2 cut(s) 842, 1088
BstKTI GATC 8 cut(s) 10, 373, 634, 657, 868, 1135, 1161, 1208
BstMAI GTCTC 4 cut(s) 293, 455, 503, 932
BstMBI GATC 8 cut(s) 7, 370, 631, 654, 865, 1132, 1158, 1205
BstMWI GCNNNNNNNGC 3 cut(s) 204, 763, 805
BstNI CCWGG 2 cut(s) 66, 285
BstNSI RCATGY 4 cut(s) 543, 604, 1388, 1465
BstSCI CCNGG 3 cut(s) 64, 283, 1184
BstSFI CTRYAG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 182, 796
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 7
BstXI CCANNNNNNTGG 2 cut(s) 253, 1231
BstYI RGATCY 1 cut(s) 7
Bsu36I CCTNAGG 1 cut(s) 1374
BsuRI GGCC 2 cut(s) 24, 89
BtgI CCRYGG 2 cut(s) 239, 1106
BtgZI GCGATG 2 cut(s) 256, 1358
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 3 cut(s) 580, 1240, 1354
BtsI GCAGTG 1 cut(s) 819
BtsIMutI CAGTG 2 cut(s) 373, 819
Cac8I GCNNGC 6 cut(s) 117, 168, 602, 782, 810, 1386
CciI TCATGA 2 cut(s) 457, 1006
CfoI GCGC 2 cut(s) 842, 1088
Cfr13I GGNCC 2 cut(s) 243, 1056
Csp6I GTAC 6 cut(s) 81, 424, 669, 911, 992, 1033
CviQI GTAC 6 cut(s) 81, 424, 669, 911, 992, 1033
DdeI CTNAG 3 cut(s) 84, 1190, 1374
DpnI GATC 8 cut(s) 9, 372, 633, 656, 867, 1134, 1160, 1207
DpnII GATC 8 cut(s) 7, 370, 631, 654, 865, 1132, 1158, 1205
DrdI GACNNNNNNGTC 2 cut(s) 356, 946
DseDI GACNNNNNNGTC 2 cut(s) 356, 946
EaeI YGGCCR 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 1310
EarI CTCTTC 1 cut(s) 1310
Eco130I CCWWGG 3 cut(s) 775, 1277, 1407
Eco24I GRGCYC 2 cut(s) 336, 1191
Eco31I GGTCTC 1 cut(s) 293
Eco47I GGWCC 2 cut(s) 243, 1056
Eco81I CCTNAGG 1 cut(s) 1374
Eco88I CYCGRG 1 cut(s) 569
EcoRI GAATTC 2 cut(s) 444, 482
EcoRII CCWGG 2 cut(s) 64, 283
EcoT14I CCWWGG 3 cut(s) 775, 1277, 1407
EcoT38I GRGCYC 2 cut(s) 336, 1191
ErhI CCWWGG 3 cut(s) 775, 1277, 1407
FalI AAGNNNNNCTT 4 cut(s) 912, 944, 1086, 1118
FaqI GGGAC 2 cut(s) 804, 1343
FauI CCCGC 1 cut(s) 773
FbaI TGATCA 2 cut(s) 370, 654
Fnu4HI GCNGC 3 cut(s) 25, 196, 785
FokI GGATG 3 cut(s) 587, 1247, 1361
FriOI GRGCYC 2 cut(s) 336, 1191
Fsp4HI GCNGC 3 cut(s) 25, 196, 785
FspAI RTGCGCAY 1 cut(s) 1087
FspBI CTAG 5 cut(s) 167, 504, 533, 843, 1016
FspI TGCGCA 1 cut(s) 1087
GlaI GCGC 2 cut(s) 841, 1087
GluI GCNGC 3 cut(s) 25, 196, 785
GsaI CCCAGC 1 cut(s) 1364
HaeII RGCGCY 1 cut(s) 843
HaeIII GGCC 2 cut(s) 24, 89
HapII CCGG 2 cut(s) 1142, 1185
HhaI GCGC 2 cut(s) 842, 1088
Hin1I GRCGYC 1 cut(s) 793
Hin6I GCGC 2 cut(s) 840, 1086
HinP1I GCGC 2 cut(s) 840, 1086
HinfI GANTC 5 cut(s) 321, 490, 527, 692, 825
HpaII CCGG 2 cut(s) 1142, 1185
HphI GGTGA 2 cut(s) 527, 641
Hpy166II GTNNAC 3 cut(s) 364, 545, 1027
Hpy188I TCNGA 5 cut(s) 7, 443, 897, 1132, 1193
Hpy188III TCNNGA 7 cut(s) 145, 458, 487, 728, 869, 1007, 1416
Hpy8I GTNNAC 3 cut(s) 364, 545, 1027
Hpy99I CGWCG 3 cut(s) 113, 362, 897
HpyAV CCTTC 4 cut(s) 394, 1013, 1049, 1172
HpyCH4III ACNGT 4 cut(s) 202, 368, 651, 1056
HpyCH4IV ACGT 4 cut(s) 111, 228, 793, 909
HpyCH4V TGCA 7 cut(s) 198, 234, 250, 419, 812, 1325, 1384
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 763, 805
HpyF3I CTNAG 3 cut(s) 84, 1190, 1374
HpySE526I ACGT 4 cut(s) 111, 228, 793, 909
Hsp92I GRCGYC 1 cut(s) 793
HspAI GCGC 2 cut(s) 840, 1086
Ksp22I TGATCA 2 cut(s) 370, 654
Kzo9I GATC 8 cut(s) 7, 370, 631, 654, 865, 1132, 1158, 1205
LmnI GCTCC 2 cut(s) 1279, 1375
Lsp1109I GCAGC 2 cut(s) 182, 796
LweI GCATC 1 cut(s) 279
MaeI CTAG 5 cut(s) 167, 504, 533, 843, 1016
MaeII ACGT 4 cut(s) 111, 228, 793, 909
MalI GATC 8 cut(s) 9, 372, 633, 656, 867, 1134, 1160, 1207
MboI GATC 8 cut(s) 7, 370, 631, 654, 865, 1132, 1158, 1205
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 2 cut(s) 336, 1191
MmeI TCCRAC 2 cut(s) 843, 875
MroXI GAANNNNTTC 4 cut(s) 134, 824, 1023, 1440
MseI TTAA 5 cut(s) 125, 408, 414, 717, 1476
MslI CAYNNNNRTG 1 cut(s) 1307
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 2 cut(s) 1142, 1185
MspR9I CCNGG 3 cut(s) 66, 285, 1186
MvaI CCWGG 2 cut(s) 66, 285
MwoI GCNNNNNNNGC 3 cut(s) 204, 763, 805
NciI CCSGG 1 cut(s) 1186
NdeII GATC 8 cut(s) 7, 370, 631, 654, 865, 1132, 1158, 1205
NheI GCTAGC 1 cut(s) 166
NlaIV GGNNCC 2 cut(s) 648, 1183
NsbI TGCGCA 1 cut(s) 1087
NspI RCATGY 4 cut(s) 543, 604, 1388, 1465
NspV TTCGAA 1 cut(s) 480
PaeI GCATGC 2 cut(s) 604, 1388
PagI TCATGA 2 cut(s) 457, 1006
PdmI GAANNNNTTC 4 cut(s) 134, 824, 1023, 1440
PfeI GAWTC 5 cut(s) 321, 490, 527, 692, 825
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 3 cut(s) 26, 197, 786
PshBI ATTAAT 1 cut(s) 414
PsiI TTATAA 3 cut(s) 77, 561, 771
Psp6I CCWGG 2 cut(s) 64, 283
PspFI CCCAGC 1 cut(s) 1360
PspGI CCWGG 2 cut(s) 64, 283
PspN4I GGNNCC 2 cut(s) 648, 1183
PspPI GGNCC 2 cut(s) 243, 1056
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 353
RsaI GTAC 6 cut(s) 82, 425, 670, 912, 993, 1034
RsaNI GTAC 6 cut(s) 81, 424, 669, 911, 992, 1033
RseI CAYNNNNRTG 1 cut(s) 1307
SaqAI TTAA 5 cut(s) 125, 408, 414, 717, 1476
SatI GCNGC 3 cut(s) 25, 196, 785
Sau3AI GATC 8 cut(s) 7, 370, 631, 654, 865, 1132, 1158, 1205
Sau96I GGNCC 2 cut(s) 243, 1056
ScaI AGTACT 2 cut(s) 82, 670
ScrFI CCNGG 3 cut(s) 66, 285, 1186
SduI GDGCHC 2 cut(s) 336, 1191
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 38
SfuI TTCGAA 1 cut(s) 480
SinI GGWCC 2 cut(s) 243, 1056
SmiMI CAYNNNNRTG 1 cut(s) 1307
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 532
SphI GCATGC 2 cut(s) 604, 1388
SsiI CCGC 4 cut(s) 25, 207, 780, 1262
SspI AATATT 1 cut(s) 1470
SspMI CTAG 5 cut(s) 167, 504, 533, 843, 1016
StyD4I CCNGG 3 cut(s) 64, 283, 1184
StyI CCWWGG 3 cut(s) 775, 1277, 1407
TaaI ACNGT 4 cut(s) 202, 368, 651, 1056
TaiI ACGT 4 cut(s) 114, 231, 796, 912
TaqI TCGA 3 cut(s) 303, 480, 963
TatI WGTACW 5 cut(s) 80, 423, 668, 991, 1032
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 5 cut(s) 321, 490, 527, 692, 825
Tru1I TTAA 5 cut(s) 125, 408, 414, 717, 1476
Tru9I TTAA 5 cut(s) 125, 408, 414, 717, 1476
TscAI CASTG 2 cut(s) 373, 819
TseI GCWGC 2 cut(s) 195, 784
TspDTI ATGAA 5 cut(s) 248, 313, 841, 1026, 1433
TspGWI ACGGA 3 cut(s) 256, 1095, 1179
TspRI CASTG 2 cut(s) 373, 819
Tth111I GACNNNGTC 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 243, 1056
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 6 cut(s) 130, 444, 482, 923, 1073, 1437
XceI RCATGY 4 cut(s) 543, 604, 1388, 1465
XmnI GAANNNNTTC 4 cut(s) 134, 824, 1023, 1440
XspI CTAG 5 cut(s) 167, 504, 533, 843, 1016
ZraI GACGTC 1 cut(s) 794
ZrmI AGTACT 2 cut(s) 82, 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.