Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Reverse (-)

37513945 .. 37514642

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGAATTCATTCAAGTTCAAGGTGGAGATCTTTTCTTTTGAGACTGGTGAGTGGAGAGAGTCAGTTATATTGTCCCCACGAAAATTCATTTTTGATGAAATCAATTCCGATATCGACTTTGCGTACAATGGAATGCTATATTCGCCGAGTAAGTCAAGTGATGCTAACTTTATTATTGGCTTGAATCCATTCATGATCAGCAACGACACTGATAACAACAGAACTCGTACTAGTAACTTCGCCGGTGATGGTGATGTTGAAATTGACAAAGAAGAATATAATCTGACCCTTGCAGCCGATGGAGTTGAAATTTTGTGTGCGAAGCACGCCGCAGATGATTATTCAATGGAATTTTCGAATTCTGTGAACGTAATAGCTTTAGAGCCAATAGCTTTTGACCCAAATCATGAGGATATATTGTTCCTAAGACTACTATTTAGAGGCGAGGACCTCAACAATTATGGAGATGGAGATGGAGATGGAGTTAAGGAATTTTATATCGAGGCCAACCTTCGCACAGGAAACTTGACCTACTACTTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

182

Amino Acids

20.7

Weight (kDa)

4.19

Isoelectric Point (pI)

27.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	333
AcsI	RAATTY	6 cut(s)	7, 86, 312, 353, 361, 494
AfaI	GTAC	2 cut(s)	128, 232
AgsI	TTSAA	6 cut(s)	16, 22, 187, 263, 311, 348
AhlI	ACTAGT	1 cut(s)	233
AloI	GAACNNNNNNTCC	2 cut(s)	407, 439
AluBI	AGCT	2 cut(s)	380, 395
AluI	AGCT	2 cut(s)	380, 395
Alw26I	GTCTC	1 cut(s)	38
AoxI	GGCC	1 cut(s)	507
ApeKI	GCWGC	1 cut(s)	296
ApoI	RAATTY	6 cut(s)	7, 86, 312, 353, 361, 494
Asp700I	GAANNNNTTC	2 cut(s)	11, 191
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	3 cut(s)	62, 260, 266
AsuII	TTCGAA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	5 cut(s)	245, 296, 464, 470, 476
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	38
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	1 cut(s)	234
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	2 cut(s)	297, 333
BlsI	GCNGC	2 cut(s)	298, 334
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	451
BmsI	GCATC	1 cut(s)	154
Bpu14I	TTCGAA	1 cut(s)	359
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	308
BshFI	GGCC	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	509
Bsp119I	TTCGAA	1 cut(s)	359
Bsp143I	GATC	2 cut(s)	30, 198
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	1 cut(s)	509
BspHI	TCATGA	2 cut(s)	195, 409
BspT104I	TTCGAA	1 cut(s)	359
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	245
BssMI	GATC	2 cut(s)	30, 198
BstBI	TTCGAA	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	428
BstKTI	GATC	2 cut(s)	33, 201
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	2 cut(s)	30, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 329
BstV1I	GCAGC	1 cut(s)	308
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	509
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	330
CciI	TCATGA	2 cut(s)	195, 409
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	451
Csp6I	GTAC	2 cut(s)	127, 231
CviAII	CATG	2 cut(s)	196, 410
CviJI	RGCY	6 cut(s)	183, 299, 380, 388, 395, 509
CviKI_1	RGCY	6 cut(s)	183, 299, 380, 388, 395, 509
CviQI	GTAC	2 cut(s)	127, 231
DdeI	CTNAG	1 cut(s)	428
DpnI	GATC	2 cut(s)	32, 200
DpnII	GATC	2 cut(s)	30, 198
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	451
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRI	GAATTC	2 cut(s)	7, 361
EcoRV	GATATC	1 cut(s)	115
FaeI	CATG	2 cut(s)	199, 413
FaiI	YATR	8 cut(s)	71, 142, 197, 282, 411, 419, 465, 501
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	2 cut(s)	195, 409
FbaI	TGATCA	1 cut(s)	198
Fnu4HI	GCNGC	2 cut(s)	297, 333
Fsp4HI	GCNGC	2 cut(s)	297, 333
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	2 cut(s)	297, 333
HaeIII	GGCC	1 cut(s)	509
HapII	CCGG	1 cut(s)	246
Hin1II	CATG	2 cut(s)	199, 413
HinfI	GANTC	2 cut(s)	62, 187
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	3 cut(s)	62, 260, 266
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	112, 288
Hpy188III	TCNNGA	2 cut(s)	196, 410
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	1 cut(s)	524
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 329
HpyF3I	CTNAG	1 cut(s)	428
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	199, 413
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	30, 198
LpnPI	CCDG	3 cut(s)	33, 259, 507
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	2 cut(s)	32, 200
MboI	GATC	2 cut(s)	30, 198
MboII	GAAGA	1 cut(s)	287
MflI	RGATCY	1 cut(s)	30
MluCI	AATT	9 cut(s)	7, 86, 106, 264, 312, 353, 361, 460, 494
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	5 cut(s)	406, 437, 442, 464, 499
MroXI	GAANNNNTTC	2 cut(s)	11, 191
MseI	TTAA	1 cut(s)	489
MspI	CCGG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	145, 329
NdeII	GATC	2 cut(s)	30, 198
NlaIII	CATG	2 cut(s)	199, 413
NmeAIII	GCCGAG	1 cut(s)	174
NspV	TTCGAA	1 cut(s)	359
PagI	TCATGA	2 cut(s)	195, 409
PctI	GAATGC	1 cut(s)	141
PdmI	GAANNNNTTC	2 cut(s)	11, 191
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	298, 334
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	451
Psp5II	RGGWCCY	1 cut(s)	451
PspPI	GGNCC	1 cut(s)	451
PspPPI	RGGWCCY	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	2 cut(s)	128, 232
RsaNI	GTAC	2 cut(s)	127, 231
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	2 cut(s)	297, 333
Sau3AI	GATC	2 cut(s)	30, 198
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	71
SetI	ASST	7 cut(s)	27, 375, 382, 397, 456, 516, 536
SfaNI	GCATC	1 cut(s)	154
SfuI	TTCGAA	1 cut(s)	359
SgrAI	CRCCGGYG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	451
SpeI	ACTAGT	1 cut(s)	233
Sse9I	AATT	9 cut(s)	7, 86, 106, 264, 312, 353, 361, 460, 494
SsiI	CCGC	1 cut(s)	333
SspMI	CTAG	1 cut(s)	234
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	3 cut(s)	117, 359, 504
TasI	AATT	9 cut(s)	7, 86, 106, 264, 312, 353, 361, 460, 494
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	296
TspDTI	ATGAA	3 cut(s)	79, 114, 184
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	6 cut(s)	7, 86, 312, 353, 361, 494
XmnI	GAANNNNTTC	2 cut(s)	11, 191
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.