Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Forward (+)

3266618 .. 3267109

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG046000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAAAAGTTTCTTCAATTTGATGAAAAAAGTTCCACGAGTGCTAGCAACATGGAATGACTTGGTTCTCTGCTGCACAGACAATGAAGATCACTGTGATTATTACATCGGCAATCCACGGACCATGCAACTGGTTATTAGTCTTCCTCCCACAGCTCGATACCGCCCTCTAGAGCCTGCCGTGGGATTCATGTGTGAGCCTTACTATAAGGAAGAAGAAGACAATACTGTTGTCGTTGAAAGTGATCAACAAGAAGAAGAAAGGAAGGTAATTAAAACTAATGCCAAGTATAAGTGCAGGATTGTGAGAATTCTTCCTCCTGATGAGACGAGTGAACGTTGTTTCGAATTTAACATTCAAGTCTTCTCTAGTGAGACTGGTGAACGGAGAGACTCAGTAGTGTCATGTCGACAAGGCTTTGTTTTAGGCCAACTTGGGTCTGAATTTGGCGTTGCTACCAATGGAATGCTATATTGGAGTTGGGACCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

163

Amino Acids

18.97

Weight (kDa)

5.04

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	409
AciI	CCGC	1 cut(s)	163
AclI	AACGTT	1 cut(s)	337
AcsI	RAATTY	3 cut(s)	309, 347, 443
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgeI	ACCGGT	1 cut(s)	486
AgsI	TTSAA	3 cut(s)	16, 239, 359
AjuI	GAANNNNNNNTTGG	2 cut(s)	457, 489
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw26I	GTCTC	3 cut(s)	320, 368, 384
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	3 cut(s)	309, 347, 443
AsiGI	ACCGGT	1 cut(s)	486
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	120, 484
AsuHPI	GGTGA	1 cut(s)	392
AsuII	TTCGAA	1 cut(s)	345
AsuNHI	GCTAGC	1 cut(s)	43
AvaII	GGWCC	2 cut(s)	120, 484
BauI	CACGAG	1 cut(s)	36
BbsI	GAAGAC	3 cut(s)	134, 225, 355
BbvI	GCAGC	1 cut(s)	59
BceAI	ACGGC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	3 cut(s)	320, 368, 384
BfaI	CTAG	3 cut(s)	44, 170, 369
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
Bme18I	GGWCC	2 cut(s)	120, 484
BmgT120I	GGNCC	2 cut(s)	120, 484
BmiI	GGNNCC	1 cut(s)	485
BmtI	GCTAGC	1 cut(s)	47
BpiI	GAAGAC	3 cut(s)	134, 225, 355
Bpu14I	TTCGAA	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	116, 180
BsaWI	WCCGGW	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse118I	RCCGGY	1 cut(s)	486
Bse1I	ACTGG	2 cut(s)	135, 382
BseDI	CCNNGG	2 cut(s)	116, 180
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	2 cut(s)	135, 382
BseXI	GCAGC	1 cut(s)	59
BsgI	GTGCAG	2 cut(s)	58, 316
BshFI	GGCC	1 cut(s)	429
BshTI	ACCGGT	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	487
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	3 cut(s)	320, 368, 384
BsmBI	CGTCTC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	429
Bsp119I	TTCGAA	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	88, 244
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	485
BspOI	GCTAGC	1 cut(s)	47
BspT104I	TTCGAA	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	135, 382
BssAI	RCCGGY	1 cut(s)	486
BssECI	CCNNGG	2 cut(s)	116, 180
BssMI	GATC	2 cut(s)	88, 244
BssSI	CACGAG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	95, 229
BstBI	TTCGAA	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	45, 177
BstDEI	CTNAG	1 cut(s)	394
BstDSI	CCRYGG	2 cut(s)	116, 180
BstKTI	GATC	2 cut(s)	91, 247
BstMAI	GTCTC	3 cut(s)	320, 368, 384
BstMBI	GATC	2 cut(s)	88, 244
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	3 cut(s)	134, 225, 355
BstXI	CCANNNNNNTGG	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	429
BtgI	CCRYGG	2 cut(s)	116, 180
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	2 cut(s)	45, 177
Cfr10I	RCCGGY	1 cut(s)	486
Cfr13I	GGNCC	2 cut(s)	120, 484
CspAI	ACCGGT	1 cut(s)	486
CviAII	CATG	4 cut(s)	51, 124, 190, 405
CviJI	RGCY	5 cut(s)	155, 175, 199, 417, 429
CviKI_1	RGCY	5 cut(s)	155, 175, 199, 417, 429
DdeI	CTNAG	1 cut(s)	394
DpnI	GATC	2 cut(s)	90, 246
DpnII	GATC	2 cut(s)	88, 244
Eco47I	GGWCC	2 cut(s)	120, 484
EcoRI	GAATTC	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	4 cut(s)	54, 127, 193, 408
FaiI	YATR	7 cut(s)	52, 125, 191, 207, 291, 406, 472
FatI	CATG	4 cut(s)	50, 123, 189, 404
FbaI	TGATCA	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	409
Fnu4HI	GCNGC	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	3 cut(s)	44, 170, 369
GluI	GCNGC	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	429
HapII	CCGG	1 cut(s)	487
Hin1II	CATG	4 cut(s)	54, 127, 193, 408
HincII	GTYRAC	1 cut(s)	410
HindII	GTYRAC	1 cut(s)	410
HinfI	GANTC	2 cut(s)	186, 392
HpaII	CCGG	1 cut(s)	487
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	3 cut(s)	335, 383, 410
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	2 cut(s)	170, 320
Hpy8I	GTNNAC	3 cut(s)	335, 383, 410
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	2 cut(s)	95, 229
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	3 cut(s)	75, 127, 297
HpyF3I	CTNAG	1 cut(s)	394
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	4 cut(s)	54, 127, 193, 408
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	88, 244
LpnPI	CCDG	5 cut(s)	116, 189, 283, 333, 363
Lsp1109I	GCAGC	1 cut(s)	59
MaeI	CTAG	3 cut(s)	44, 170, 369
MaeII	ACGT	1 cut(s)	337
MalI	GATC	2 cut(s)	90, 246
MboI	GATC	2 cut(s)	88, 244
MluCI	AATT	5 cut(s)	16, 270, 309, 347, 443
MlyI	GAGTC	1 cut(s)	386
MnlI	CCTC	3 cut(s)	156, 177, 327
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	273, 351
MspI	CCGG	1 cut(s)	487
Mva1269I	GAATGC	1 cut(s)	471
NdeII	GATC	2 cut(s)	88, 244
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	4 cut(s)	54, 127, 193, 408
NlaIV	GGNNCC	1 cut(s)	485
NspV	TTCGAA	1 cut(s)	345
PctI	GAATGC	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	186
PinAI	ACCGGT	1 cut(s)	486
PkrI	GCNGC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
Psp1406I	AACGTT	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	2 cut(s)	120, 484
SalI	GTCGAC	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	273, 351
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	2 cut(s)	88, 244
Sau96I	GGNCC	2 cut(s)	120, 484
SchI	GAGTC	1 cut(s)	386
SetI	ASST	3 cut(s)	157, 270, 340
SfuI	TTCGAA	1 cut(s)	345
SinI	GGWCC	2 cut(s)	120, 484
Sse9I	AATT	5 cut(s)	16, 270, 309, 347, 443
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	3 cut(s)	44, 170, 369
TaaI	ACNGT	2 cut(s)	95, 229
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	3 cut(s)	157, 345, 409
TasI	AATT	5 cut(s)	16, 270, 309, 347, 443
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	2 cut(s)	273, 351
Tru9I	TTAA	2 cut(s)	273, 351
TscAI	CASTG	1 cut(s)	98
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	4 cut(s)	17, 38, 99, 178
TspGWI	ACGGA	2 cut(s)	133, 400
TspRI	CASTG	1 cut(s)	98
VpaK11BI	GGWCC	2 cut(s)	120, 484
XapI	RAATTY	3 cut(s)	309, 347, 443
XbaI	TCTAGA	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	409
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	44, 170, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.