Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000197.1

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Reverse (-)

38493 .. 39746

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000197.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atggatgaactccttacggcagatttgttcgaaagattgtggagattcttcaaactcaagaagaagatgaagaaattacaagtgctagctacatggaatgacttggttctctgctgcacattcaaacagtcgtatctgcattactacatctgcaatccaaggaccatgcaactggttcatcttcctccgatctttgtatggagatgggtcagtgaggctgctgtgggattcatttgtgagcccaaggaagaagaagacagacccgccgccgacggtgataaaaaagaagaagaaaggaaagtgattaaaattcatgccgagtataagtgcaaggttgtgagaattcttcctcctattgacagggaaaaactttgtttcgaattcaagattcaggtcttctctagtgagattggtgtgtggagagaatcagtagtatcatgtccacgcggctttatctttcgccaacttgtgtcccaatttggcgttgctaccaatggaatgctatattggtgtgattataagcatggtgatctgcttgggttgggaccgttgatgatcaacaacaagagtactactgctaatggtgattttggctatcaatttcatgttattaaacttgatcagcagcttgatcttcatttttcttcattttattaccttcgtgggcaccggggacgtctgcagttggtgcagacggtgaagaatgagctccccataggcgctaggctattggtttgggagttggaaaaagaagaactagaacaaatcgcggtacaagggggtggagaactgggtcagaaacactggaaaacttataatatactggaccaagtaatacttactagggtgaggtatgtaggttttgatccaaatgatttggatatatgttttgtgtctgtagcagatgaatatgataacctacctgtcatttacaagtgcaacattcacacaggagaatggttcaagacagaaaaaagttttgatgggcgcccattacaatttatgctcccatggcggcctgcaccagttcctacaatttctattcccgtgccgaatagaaatactgggatcaatgggagtgaggacgaggttgctgcgctgagggatagagcaacaccaagagtagtgaaaaaggtaaagaagaccaaagatgggaatggtgttgtgaatggagaggagggtatgggttttcaagcttcaaggttaagtggtagaaagcatgacactgatgtggtgaagggtggttcgacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

417

Amino Acids

48.01

Weight (kDa)

8.53

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	519, 816
AatII	GACGTC	1 cut(s)	679
AccB1I	GGYRCC	2 cut(s)	666, 987
AccII	CGCG	2 cut(s)	447, 770
AciI	CCGC	5 cut(s)	264, 267, 447, 770, 1015
AclWI	GGATC	2 cut(s)	860, 1076
AcsI	RAATTY	3 cut(s)	309, 342, 380
AcyI	GRCGYC	2 cut(s)	676, 988
AfaI	GTAC	2 cut(s)	571, 774
AfiI	CCNNNNNNNGG	1 cut(s)	1152
AgsI	TTSAA	6 cut(s)	52, 124, 385, 964, 1193, 1200
AjuI	GAANNNNNNNTTGG	2 cut(s)	490, 522
AleI	CACNNNNGTG	1 cut(s)	1229
AluBI	AGCT	4 cut(s)	89, 628, 709, 1196
AluI	AGCT	4 cut(s)	89, 628, 709, 1196
Alw21I	GWGCWC	1 cut(s)	711
AlwI	GGATC	2 cut(s)	860, 1076
AoxI	GGCC	1 cut(s)	1016
ApeKI	GCWGC	4 cut(s)	114, 218, 625, 1094
ApoI	RAATTY	3 cut(s)	309, 342, 380
AspLEI	GCGC	3 cut(s)	722, 990, 1099
AspS9I	GGNCC	3 cut(s)	162, 545, 826
AsuC2I	CCSGG	1 cut(s)	671
AsuHPI	GGTGA	6 cut(s)	287, 539, 596, 709, 859, 1246
AsuII	TTCGAA	2 cut(s)	30, 378
AsuNHI	GCTAGC	1 cut(s)	85
AvaII	GGWCC	3 cut(s)	162, 545, 826
BaeGI	GKGCMC	1 cut(s)	669
BaeI	ACNNNNGTAYC	2 cut(s)	116, 149
BanI	GGYRCC	2 cut(s)	666, 987
BanII	GRGCYC	2 cut(s)	243, 711
BbsI	GAAGAC	3 cut(s)	261, 388, 1148
Bbv12I	GWGCWC	1 cut(s)	711
BbvCI	CCTCAGC	1 cut(s)	1100
BbvI	GCAGC	4 cut(s)	101, 205, 637, 1081
BccI	CCATC	3 cut(s)	198, 977, 1145
BceAI	ACGGC	1 cut(s)	33
BcgI	CGANNNNNNTGC	2 cut(s)	1076, 1110
BclI	TGATCA	2 cut(s)	555, 619
BcnI	CCSGG	1 cut(s)	671
BfaI	CTAG	5 cut(s)	86, 402, 723, 758, 843
BfmI	CTRYAG	2 cut(s)	680, 897
BfoI	RGCGCY	2 cut(s)	723, 991
BisI	GCNGC	7 cut(s)	115, 219, 267, 448, 626, 1016, 1095
BlsI	GCNGC	7 cut(s)	116, 220, 268, 449, 627, 1017, 1096
BmcAI	AGTACT	1 cut(s)	571
Bme1390I	CCNGG	1 cut(s)	671
Bme18I	GGWCC	3 cut(s)	162, 545, 826
BmgT120I	GGNCC	3 cut(s)	162, 545, 826
BmiI	GGNNCC	3 cut(s)	546, 668, 989
BmrFI	CCNGG	1 cut(s)	671
BmrI	ACTGGG	2 cut(s)	800, 1074
BmtI	GCTAGC	1 cut(s)	89
BmuI	ACTGGG	2 cut(s)	800, 1074
BpiI	GAAGAC	3 cut(s)	261, 388, 1148
Bpu10I	CCTNAGC	1 cut(s)	1100
Bpu14I	TTCGAA	2 cut(s)	30, 378
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	671
BsaHI	GRCGYC	2 cut(s)	676, 988
BsaJI	CCNNGG	4 cut(s)	158, 243, 670, 1010
Bsc4I	CCNNNNNNNGG	1 cut(s)	1152
Bse1I	ACTGG	6 cut(s)	177, 795, 809, 828, 1025, 1069
BseDI	CCNNGG	4 cut(s)	158, 243, 670, 1010
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	1152
BseMII	CTCAG	1 cut(s)	1091
BseNI	ACTGG	6 cut(s)	177, 795, 809, 828, 1025, 1069
BseRI	GAGGAG	1 cut(s)	1190
BseSI	GKGCMC	1 cut(s)	669
BseXI	GCAGC	4 cut(s)	101, 205, 637, 1081
BsgI	GTGCAG	3 cut(s)	100, 710, 1005
Bsh1236I	CGCG	2 cut(s)	447, 770
BshFI	GGCC	1 cut(s)	1018
BshNI	GGYRCC	2 cut(s)	666, 987
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	1 cut(s)	670
BslFI	GGGAC	3 cut(s)	457, 558, 687
BslI	CCNNNNNNNGG	1 cut(s)	1152
BsmFI	GGGAC	3 cut(s)	457, 558, 687
BsmI	GAATGC	1 cut(s)	504
BsnI	GGCC	1 cut(s)	1018
Bsp119I	TTCGAA	2 cut(s)	30, 378
Bsp1286I	GDGCHC	3 cut(s)	243, 669, 711
Bsp143I	GATC	7 cut(s)	189, 529, 555, 619, 631, 865, 1068
Bsp19I	CCATGG	1 cut(s)	1010
BspACI	CCGC	5 cut(s)	264, 267, 447, 770, 1015
BspANI	GGCC	1 cut(s)	1018
BspCNI	CTCAG	1 cut(s)	1092
BspFNI	CGCG	2 cut(s)	447, 770
BspLI	GGNNCC	3 cut(s)	546, 668, 989
BspMAI	CTGCAG	1 cut(s)	684
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	860, 1076
BspT104I	TTCGAA	2 cut(s)	30, 378
BspT107I	GGYRCC	2 cut(s)	666, 987
BsrI	ACTGG	6 cut(s)	177, 795, 809, 828, 1025, 1069
BssECI	CCNNGG	4 cut(s)	158, 243, 670, 1010
BssMI	GATC	7 cut(s)	189, 529, 555, 619, 631, 865, 1068
BssNI	GRCGYC	2 cut(s)	676, 988
BssT1I	CCWWGG	3 cut(s)	158, 243, 1010
Bst4CI	ACNGT	4 cut(s)	129, 275, 549, 697
BstACI	GRCGYC	2 cut(s)	676, 988
BstAPI	GCANNNNNTGC	1 cut(s)	688
BstBI	TTCGAA	2 cut(s)	30, 378
BstC8I	GCNNGC	2 cut(s)	87, 1020
BstDEI	CTNAG	1 cut(s)	1100
BstDSI	CCRYGG	1 cut(s)	1010
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	2 cut(s)	447, 770
BstH2I	RGCGCY	2 cut(s)	723, 991
BstHHI	GCGC	3 cut(s)	722, 990, 1099
BstKTI	GATC	7 cut(s)	192, 532, 558, 622, 634, 868, 1071
BstMBI	GATC	7 cut(s)	189, 529, 555, 619, 631, 865, 1068
BstMWI	GCNNNNNNNGC	2 cut(s)	688, 1012
BstSCI	CCNGG	1 cut(s)	669
BstSFI	CTRYAG	2 cut(s)	680, 897
BstSLI	GKGCMC	1 cut(s)	669
BstUI	CGCG	2 cut(s)	447, 770
BstV1I	GCAGC	4 cut(s)	101, 205, 637, 1081
BstV2I	GAAGAC	3 cut(s)	261, 388, 1148
BstXI	CCANNNNNNTGG	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	1018
BtgI	CCRYGG	1 cut(s)	1010
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	3 cut(s)	217, 802, 1224
Cac8I	GCNNGC	2 cut(s)	87, 1020
CfoI	GCGC	3 cut(s)	722, 990, 1099
Cfr13I	GGNCC	3 cut(s)	162, 545, 826
Csp6I	GTAC	2 cut(s)	570, 773
CviAII	CATG	8 cut(s)	93, 166, 314, 438, 524, 605, 1011, 1220
CviQI	GTAC	2 cut(s)	570, 773
DdeI	CTNAG	1 cut(s)	1100
DinI	GGCGCC	1 cut(s)	989
DpnI	GATC	7 cut(s)	191, 531, 557, 621, 633, 867, 1070
DpnII	GATC	7 cut(s)	189, 529, 555, 619, 631, 865, 1068
Ecl136II	GAGCTC	1 cut(s)	709
Eco130I	CCWWGG	3 cut(s)	158, 243, 1010
Eco24I	GRGCYC	2 cut(s)	243, 711
Eco47I	GGWCC	3 cut(s)	162, 545, 826
Eco53kI	GAGCTC	1 cut(s)	709
EcoICRI	GAGCTC	1 cut(s)	709
EcoRI	GAATTC	2 cut(s)	342, 380
EcoT14I	CCWWGG	3 cut(s)	158, 243, 1010
EcoT38I	GRGCYC	2 cut(s)	243, 711
EgeI	GGCGCC	1 cut(s)	989
EheI	GGCGCC	1 cut(s)	989
ErhI	CCWWGG	3 cut(s)	158, 243, 1010
FaeI	CATG	8 cut(s)	96, 169, 317, 441, 527, 608, 1014, 1223
FalI	AAGNNNNNCTT	2 cut(s)	822, 854
FaqI	GGGAC	3 cut(s)	457, 558, 687
FatI	CATG	8 cut(s)	92, 165, 313, 437, 523, 604, 1010, 1219
FauI	CCCGC	1 cut(s)	271
FbaI	TGATCA	2 cut(s)	555, 619
Fnu4HI	GCNGC	7 cut(s)	115, 219, 267, 448, 626, 1016, 1095
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	243, 711
Fsp4HI	GCNGC	7 cut(s)	115, 219, 267, 448, 626, 1016, 1095
FspBI	CTAG	5 cut(s)	86, 402, 723, 758, 843
GlaI	GCGC	3 cut(s)	721, 989, 1098
GluI	GCNGC	7 cut(s)	115, 219, 267, 448, 626, 1016, 1095
HaeII	RGCGCY	2 cut(s)	723, 991
HaeIII	GGCC	1 cut(s)	1018
HapII	CCGG	1 cut(s)	670
HhaI	GCGC	3 cut(s)	722, 990, 1099
Hin1I	GRCGYC	2 cut(s)	676, 988
Hin1II	CATG	8 cut(s)	96, 169, 317, 441, 527, 608, 1014, 1223
Hin6I	GCGC	3 cut(s)	720, 988, 1097
HinP1I	GCGC	3 cut(s)	720, 988, 1097
HindIII	AAGCTT	1 cut(s)	1194
HinfI	GANTC	4 cut(s)	45, 228, 388, 425
HpaII	CCGG	1 cut(s)	670
HphI	GGTGA	6 cut(s)	287, 539, 596, 709, 859, 1246
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	2 cut(s)	189, 798
Hpy188III	TCNNGA	3 cut(s)	58, 385, 964
Hpy8I	GTNNAC	1 cut(s)	443
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	668, 1231
HpyCH4III	ACNGT	4 cut(s)	129, 275, 549, 697
HpyCH4IV	ACGT	1 cut(s)	676
HpyCH4V	TGCA	9 cut(s)	117, 139, 153, 169, 330, 682, 691, 939, 1022
HpyF10VI	GCNNNNNNNGC	2 cut(s)	688, 1012
HpyF3I	CTNAG	1 cut(s)	1100
HpySE526I	ACGT	1 cut(s)	676
Hsp92I	GRCGYC	2 cut(s)	676, 988
Hsp92II	CATG	8 cut(s)	96, 169, 317, 441, 527, 608, 1014, 1223
HspAI	GCGC	3 cut(s)	720, 988, 1097
KasI	GGCGCC	1 cut(s)	987
Ksp22I	TGATCA	2 cut(s)	555, 619
Kzo9I	GATC	7 cut(s)	189, 529, 555, 619, 631, 865, 1068
LmnI	GCTCC	2 cut(s)	714, 1011
Lsp1109I	GCAGC	4 cut(s)	101, 205, 637, 1081
MaeI	CTAG	5 cut(s)	86, 402, 723, 758, 843
MaeII	ACGT	1 cut(s)	676
MalI	GATC	7 cut(s)	191, 531, 557, 621, 633, 867, 1070
MboI	GATC	7 cut(s)	189, 529, 555, 619, 631, 865, 1068
MhlI	GDGCHC	3 cut(s)	243, 669, 711
MluCI	AATT	8 cut(s)	74, 309, 342, 380, 476, 599, 998, 1035
Mly113I	GGCGCC	1 cut(s)	988
MmeI	TCCRAC	1 cut(s)	723
MnlI	CCTC	9 cut(s)	195, 208, 360, 843, 1075, 1081, 1095, 1168, 1171
MseI	TTAA	3 cut(s)	306, 612, 1205
MslI	CAYNNNNRTG	1 cut(s)	1229
MspI	CCGG	1 cut(s)	670
MspR9I	CCNGG	1 cut(s)	671
Mva1269I	GAATGC	1 cut(s)	504
MvnI	CGCG	2 cut(s)	447, 770
MwoI	GCNNNNNNNGC	2 cut(s)	688, 1012
NarI	GGCGCC	1 cut(s)	988
NciI	CCSGG	1 cut(s)	671
NcoI	CCATGG	1 cut(s)	1010
NdeII	GATC	7 cut(s)	189, 529, 555, 619, 631, 865, 1068
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	8 cut(s)	96, 169, 317, 441, 527, 608, 1014, 1223
NlaIV	GGNNCC	3 cut(s)	546, 668, 989
NmeAIII	GCCGAG	1 cut(s)	343
NspV	TTCGAA	2 cut(s)	30, 378
OliI	CACNNNNGTG	1 cut(s)	1229
PctI	GAATGC	1 cut(s)	504
PfeI	GAWTC	4 cut(s)	45, 228, 388, 425
PkrI	GCNGC	7 cut(s)	116, 220, 268, 449, 627, 1017, 1096
PluTI	GGCGCC	1 cut(s)	991
PsiI	TTATAA	2 cut(s)	519, 816
Psp124BI	GAGCTC	1 cut(s)	711
PspN4I	GGNNCC	3 cut(s)	546, 668, 989
PspPI	GGNCC	3 cut(s)	162, 545, 826
PstI	CTGCAG	1 cut(s)	684
RsaI	GTAC	2 cut(s)	571, 774
RsaNI	GTAC	2 cut(s)	570, 773
RseI	CAYNNNNRTG	1 cut(s)	1229
SacI	GAGCTC	1 cut(s)	711
SaqAI	TTAA	3 cut(s)	306, 612, 1205
SatI	GCNGC	7 cut(s)	115, 219, 267, 448, 626, 1016, 1095
Sau3AI	GATC	7 cut(s)	189, 529, 555, 619, 631, 865, 1068
Sau96I	GGNCC	3 cut(s)	162, 545, 826
ScaI	AGTACT	1 cut(s)	571
ScrFI	CCNGG	1 cut(s)	671
SduI	GDGCHC	3 cut(s)	243, 669, 711
SfcI	CTRYAG	2 cut(s)	680, 897
SfoI	GGCGCC	1 cut(s)	989
SfuI	TTCGAA	2 cut(s)	30, 378
SinI	GGWCC	3 cut(s)	162, 545, 826
SmiMI	CAYNNNNRTG	1 cut(s)	1229
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	8 cut(s)	74, 309, 342, 380, 476, 599, 998, 1035
SsiI	CCGC	5 cut(s)	264, 267, 447, 770, 1015
SspDI	GGCGCC	1 cut(s)	987
SspMI	CTAG	5 cut(s)	86, 402, 723, 758, 843
SstI	GAGCTC	1 cut(s)	711
StyD4I	CCNGG	1 cut(s)	669
StyI	CCWWGG	3 cut(s)	158, 243, 1010
TaaI	ACNGT	4 cut(s)	129, 275, 549, 697
TaiI	ACGT	1 cut(s)	679
TaqI	TCGA	3 cut(s)	30, 378, 1247
TasI	AATT	8 cut(s)	74, 309, 342, 380, 476, 599, 998, 1035
TatI	WGTACW	1 cut(s)	569
TauI	GCSGC	3 cut(s)	269, 450, 1018
TfiI	GAWTC	4 cut(s)	45, 228, 388, 425
Tru1I	TTAA	3 cut(s)	306, 612, 1205
Tru9I	TTAA	3 cut(s)	306, 612, 1205
TscAI	CASTG	3 cut(s)	217, 809, 1231
TseI	GCWGC	4 cut(s)	114, 218, 625, 1094
TspDTI	ATGAA	9 cut(s)	21, 83, 167, 220, 302, 593, 626, 636, 921
TspRI	CASTG	3 cut(s)	217, 809, 1231
VpaK11BI	GGWCC	3 cut(s)	162, 545, 826
XapI	RAATTY	3 cut(s)	309, 342, 380
XspI	CTAG	5 cut(s)	86, 402, 723, 758, 843
ZraI	GACGTC	1 cut(s)	677
ZrmI	AGTACT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.