FvH4_1g02011

ribosomal protein L4

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
1056892 .. 1058486
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02011.t1

Sequence Viewer

Length: 1464 bp
ATGGAAGGTGATAGAAATCCAGCTACTAGCAAAAGAAAATTTAGCGAGGACTCGGTGTCTTCATCTGATGACGACCTACCACTGTTGAAGAGAGCGAAGAGATTAGCTGCGGCGAAAACATCATCCTCAGCAACCAATGCTAGAAATCCTGCAACAACCAGCAAAAGAAAATTAAGCCAAGTAGTACCTTTGTCTGATGATGACCTGAGGCAGTCGAAACGATTAGCATCTTCATCAGCAACCAGTATACATGATATCCCAAATGAATTATTAGTTGAAATCCTTTGTCGACTGCCTTGCGCAAAATCTATCTTTCGATGCAAGTCTGTTTCAAAGACTTGGCTCTCACTCACGTCAGACCCTTCTTTTATCGGCCGCTTTTTGTGGCTCCAAAGACATAACCAAACCCTGATCGCTGGTACTATTATAAACCAGACGTGGGGGAATGAACTCCTTAACACGGATTTGTTTGCAAGATTTAGGAGTTTCAGAACTGAGGAGAATGAGCGTTTAGAAGTGCTAGCTACATGGAACGACTTGGTTCTCTGCAAAAGTTTATTCCAAGATGACGGTCAATATTACATCTGTAATCCAAGGACCATGCGATCAAAGGACCAGCTGGTTACTCTCCCTCCGATCCATCAACGTGGAGAGGTTGCTGTGGGATTCATGTGTGAGCCATACTATAAGGAAGAAGAAGATGACAGACACGCTGACAATAGTACTGATCAAAAAGAAGGAGACAAAAGGAAGGTAATTAGAATTGATGCCGAGTATAAGTTCAAGGTTGTGAGAATTCTTGCTCCTGAAAACGAGGACAAGCTTTGTTTCGAATTCAGGATTCAGGTCTTCTCTAATGAGATTGGTGAGTGGAGAGAGTCACTAGTATCATGTCCACGCGGCTTTATTTTCTCCGAACTCGAACGTTGTGGCTTTGCTAGCAATGGAATGCTATATTGGAAAGCTGAAAAAGATGGTGATCTGCTCGGGCTGGGACCTTTGATGACTTGTTCTAATAGTACTACTGCTACTGCCAATGGTGATTTGGGGAATCAATTTCATGTTATTAAACTTGTTGATAGGCACGAACATCCAGATTTATGTTCTTCATTATATCATCTTCAGGGGCACCGTGGATGTCTGCAGTTGGTGCGGGTGAAGGAGAATGAGAACGTGATTGGAGCTAGGCTATTTGTTTGGGAGTTAGAAAAAGAAGAACTAGAACAAATGGCGGTACAAGGGGGTGGAGAACTTGATCCTGCCCGTTCAAGAAAGGAACAAACATATGACGATTATATTGTCATTTACAAGTGCAACATTCACACAGGAGAATGTTCCAAGATGAAGATGGATAAACCATTTTCTGGGAAAGCATTACAAATTATGCTCCCATGGTGGCCCACACCAGCTCCTAGAATACGTTCCCATAAAGTAGAGATCCCCAGTGAGCAAGTAATTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

488

Amino Acids

55.59

Weight (kDa)

6.62

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 83 - 123 2.7e-07 F-box-like
F-box PF00646 83 - 123 5.2e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
Acc16I TGCGCA 1 cut(s) 301
AccB1I GGYRCC 1 cut(s) 1128
AccB7I CCANNNNNTGG 1 cut(s) 1364
AccI GTMKAC 2 cut(s) 247, 289
AccII CGCG 1 cut(s) 900
AciI CCGC 5 cut(s) 110, 376, 900, 1153, 1232
AclI AACGTT 1 cut(s) 925
AclWI GGATC 3 cut(s) 631, 1250, 1432
AcoI YGGCCR 1 cut(s) 373
AcsI RAATTY 3 cut(s) 38, 795, 833
AcuI CTGAAG 1 cut(s) 1106
AfaI GTAC 5 cut(s) 186, 421, 724, 1021, 1236
AfiI CCNNNNNNNGG 3 cut(s) 439, 460, 1364
AgsI TTSAA 5 cut(s) 88, 278, 333, 784, 1269
AhdI GACNNNNNGTC 1 cut(s) 55
AhlI ACTAGT 1 cut(s) 883
AjiI CACGTC 2 cut(s) 354, 438
AjuI GAANNNNNNNTTGG 2 cut(s) 940, 972
AluBI AGCT 8 cut(s) 23, 107, 524, 619, 823, 965, 1184, 1409
AluI AGCT 8 cut(s) 23, 107, 524, 619, 823, 965, 1184, 1409
Alw26I GTCTC 1 cut(s) 735
AlwI GGATC 3 cut(s) 631, 1250, 1432
Ama87I CYCGRG 1 cut(s) 986
AoxI GGCC 2 cut(s) 373, 1397
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 3 cut(s) 38, 795, 833
Asp700I GAANNNNTTC 1 cut(s) 1420
AspLEI GCGC 1 cut(s) 302
AspS9I GGNCC 4 cut(s) 597, 613, 995, 1398
AsuHPI GGTGA 5 cut(s) 20, 878, 989, 1052, 1168
AsuII TTCGAA 1 cut(s) 831
AsuNHI GCTAGC 2 cut(s) 520, 938
AvaI CYCGRG 1 cut(s) 986
AvaII GGWCC 3 cut(s) 597, 613, 995
AxyI CCTNAGG 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 1131
BanI GGYRCC 1 cut(s) 1128
BbsI GAAGAC 2 cut(s) 51, 841
BbvCI CCTCAGC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 94
BccI CCATC 3 cut(s) 648, 968, 1342
BcgI CGANNNNNNTGC 2 cut(s) 279, 313
BclI TGATCA 1 cut(s) 727
BcoDI GTCTC 1 cut(s) 735
BcuI ACTAGT 1 cut(s) 883
BfaI CTAG 8 cut(s) 27, 141, 521, 884, 939, 1185, 1220, 1413
BfmI CTRYAG 1 cut(s) 1142
BisI GCNGC 4 cut(s) 108, 111, 376, 901
BlsI GCNGC 4 cut(s) 109, 112, 377, 902
BmcAI AGTACT 2 cut(s) 724, 1021
Bme18I GGWCC 3 cut(s) 597, 613, 995
BmeRI GACNNNNNGTC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 986
BmgBI CACGTC 2 cut(s) 354, 438
BmgT120I GGNCC 4 cut(s) 597, 613, 995, 1398
BmiI GGNNCC 3 cut(s) 389, 996, 1130
BmrI ACTGGG 1 cut(s) 1437
BmsI GCATC 3 cut(s) 236, 308, 757
BmtI GCTAGC 2 cut(s) 524, 942
BmuI ACTGGG 1 cut(s) 1437
BpiI GAAGAC 2 cut(s) 51, 841
Bpu10I CCTNAGC 1 cut(s) 127
Bpu14I TTCGAA 1 cut(s) 831
BsaBI GATNNNNATC 3 cut(s) 15, 226, 978
BsaJI CCNNGG 3 cut(s) 593, 1132, 1391
BsaXI ACNNNNNCTCC 4 cut(s) 616, 646, 1393, 1423
Bsc4I CCNNNNNNNGG 3 cut(s) 439, 460, 1364
Bse1I ACTGG 2 cut(s) 243, 1443
Bse21I CCTNAGG 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 949
Bse8I GATNNNNATC 3 cut(s) 15, 226, 978
BseDI CCNNGG 3 cut(s) 593, 1132, 1391
BseGI GGATG 3 cut(s) 122, 1090, 1142
BseJI GATNNNNATC 3 cut(s) 15, 226, 978
BseLI CCNNNNNNNGG 3 cut(s) 439, 460, 1364
BseMI GCAATG 1 cut(s) 949
BseMII CTCAG 3 cut(s) 141, 197, 486
BseNI ACTGG 2 cut(s) 243, 1443
BseRI GAGGAG 1 cut(s) 512
BseSI GKGCMC 1 cut(s) 1131
BseX3I CGGCCG 1 cut(s) 373
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 991
Bsh1236I CGCG 1 cut(s) 900
Bsh1285I CGRYCG 1 cut(s) 376
BshFI GGCC 2 cut(s) 375, 1399
BshNI GGYRCC 1 cut(s) 1128
BsiEI CGRYCG 1 cut(s) 376
BsiHKCI CYCGRG 1 cut(s) 986
BslFI GGGAC 1 cut(s) 1008
BslI CCNNNNNNNGG 3 cut(s) 439, 460, 1364
BsmAI GTCTC 1 cut(s) 735
BsmFI GGGAC 1 cut(s) 1008
BsmI GAATGC 1 cut(s) 954
BsnI GGCC 2 cut(s) 375, 1399
BsoBI CYCGRG 1 cut(s) 986
Bsp119I TTCGAA 1 cut(s) 831
Bsp1286I GDGCHC 1 cut(s) 1131
Bsp143I GATC 7 cut(s) 411, 605, 636, 727, 979, 1255, 1437
Bsp19I CCATGG 1 cut(s) 1391
BspACI CCGC 5 cut(s) 110, 376, 900, 1153, 1232
BspANI GGCC 2 cut(s) 375, 1399
BspCNI CTCAG 3 cut(s) 140, 198, 487
BspFNI CGCG 1 cut(s) 900
BspLI GGNNCC 3 cut(s) 389, 996, 1130
BspMAI CTGCAG 1 cut(s) 1146
BspOI GCTAGC 2 cut(s) 524, 942
BspPI GGATC 3 cut(s) 631, 1250, 1432
BspT104I TTCGAA 1 cut(s) 831
BspT107I GGYRCC 1 cut(s) 1128
BsrDI GCAATG 1 cut(s) 949
BsrI ACTGG 2 cut(s) 243, 1443
BssECI CCNNGG 3 cut(s) 593, 1132, 1391
BssMI GATC 7 cut(s) 411, 605, 636, 727, 979, 1255, 1437
BssNAI GTATAC 1 cut(s) 248
BssT1I CCWWGG 2 cut(s) 593, 1391
Bst1107I GTATAC 1 cut(s) 248
Bst4CI ACNGT 3 cut(s) 84, 572, 1133
Bst6I CTCTTC 2 cut(s) 83, 92
BstAPI GCANNNNNTGC 2 cut(s) 137, 1150
BstBI TTCGAA 1 cut(s) 831
BstC8I GCNNGC 2 cut(s) 522, 940
BstDEI CTNAG 3 cut(s) 127, 206, 495
BstDSI CCRYGG 2 cut(s) 1132, 1391
BstF5I GGATG 3 cut(s) 122, 1090, 1142
BstFNI CGCG 1 cut(s) 900
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 7 cut(s) 414, 608, 639, 730, 982, 1258, 1440
BstMAI GTCTC 1 cut(s) 735
BstMBI GATC 7 cut(s) 411, 605, 636, 727, 979, 1255, 1437
BstMCI CGRYCG 1 cut(s) 376
BstMWI GCNNNNNNNGC 3 cut(s) 137, 939, 1150
BstSFI CTRYAG 1 cut(s) 1142
BstSLI GKGCMC 1 cut(s) 1131
BstUI CGCG 1 cut(s) 900
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 2 cut(s) 51, 841
BstX2I RGATCY 1 cut(s) 1437
BstXI CCANNNNNNTGG 1 cut(s) 647
BstYI RGATCY 1 cut(s) 1437
BstZ17I GTATAC 1 cut(s) 248
BstZI CGGCCG 1 cut(s) 373
Bsu36I CCTNAGG 1 cut(s) 206
BsuRI GGCC 2 cut(s) 375, 1399
BtgI CCRYGG 2 cut(s) 1132, 1391
BtrI CACGTC 2 cut(s) 354, 438
BtsCI GGATG 3 cut(s) 122, 1090, 1142
BtsIMutI CAGTG 2 cut(s) 80, 1450
Cac8I GCNNGC 2 cut(s) 522, 940
CfoI GCGC 1 cut(s) 302
Cfr13I GGNCC 4 cut(s) 597, 613, 995, 1398
Csp6I GTAC 5 cut(s) 185, 420, 723, 1020, 1235
CviAII CATG 7 cut(s) 251, 528, 601, 670, 891, 1061, 1392
CviQI GTAC 5 cut(s) 185, 420, 723, 1020, 1235
DdeI CTNAG 3 cut(s) 127, 206, 495
DpnI GATC 7 cut(s) 413, 607, 638, 729, 981, 1257, 1439
DpnII GATC 7 cut(s) 411, 605, 636, 727, 979, 1255, 1437
DriI GACNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 373
EagI CGGCCG 1 cut(s) 373
Eam1104I CTCTTC 2 cut(s) 83, 92
Eam1105I GACNNNNNGTC 1 cut(s) 55
EarI CTCTTC 2 cut(s) 83, 92
EclXI CGGCCG 1 cut(s) 373
Eco130I CCWWGG 2 cut(s) 593, 1391
Eco32I GATATC 1 cut(s) 256
Eco47I GGWCC 3 cut(s) 597, 613, 995
Eco52I CGGCCG 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 1106
Eco81I CCTNAGG 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 986
EcoO109I RGGNCCY 1 cut(s) 995
EcoRI GAATTC 2 cut(s) 795, 833
EcoRV GATATC 1 cut(s) 256
EcoT14I CCWWGG 2 cut(s) 593, 1391
ErhI CCWWGG 2 cut(s) 593, 1391
FaeI CATG 7 cut(s) 254, 531, 604, 673, 894, 1064, 1395
FaqI GGGAC 1 cut(s) 1008
FatI CATG 7 cut(s) 250, 527, 600, 669, 890, 1060, 1391
FauI CCCGC 1 cut(s) 1146
FauNDI CATATG 1 cut(s) 1285
FbaI TGATCA 1 cut(s) 727
FblI GTMKAC 2 cut(s) 247, 289
Fnu4HI GCNGC 4 cut(s) 108, 111, 376, 901
FokI GGATG 3 cut(s) 109, 1077, 1149
Fsp4HI GCNGC 4 cut(s) 108, 111, 376, 901
FspBI CTAG 8 cut(s) 27, 141, 521, 884, 939, 1185, 1220, 1413
FspI TGCGCA 1 cut(s) 301
GlaI GCGC 1 cut(s) 301
GluI GCNGC 4 cut(s) 108, 111, 376, 901
GsaI CCCAGC 1 cut(s) 995
HaeIII GGCC 2 cut(s) 375, 1399
HhaI GCGC 1 cut(s) 302
Hin1II CATG 7 cut(s) 254, 531, 604, 673, 894, 1064, 1395
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HincII GTYRAC 1 cut(s) 290
HindII GTYRAC 1 cut(s) 290
HindIII AAGCTT 1 cut(s) 821
HinfI GANTC 5 cut(s) 50, 666, 841, 878, 1051
HphI GGTGA 5 cut(s) 20, 878, 989, 1052, 1168
Hpy166II GTNNAC 3 cut(s) 248, 290, 896
Hpy188I TCNGA 6 cut(s) 67, 196, 358, 491, 636, 916
Hpy188III TCNNGA 4 cut(s) 806, 838, 1094, 1269
Hpy8I GTNNAC 3 cut(s) 248, 290, 896
HpyAV CCTTC 4 cut(s) 372, 731, 745, 1153
HpyCH4III ACNGT 3 cut(s) 84, 572, 1133
HpyCH4IV ACGT 6 cut(s) 353, 437, 646, 925, 1173, 1420
HpyCH4V TGCA 6 cut(s) 152, 321, 473, 549, 1144, 1314
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 939, 1150
HpyF3I CTNAG 3 cut(s) 127, 206, 495
HpySE526I ACGT 6 cut(s) 353, 437, 646, 925, 1173, 1420
Hsp92II CATG 7 cut(s) 254, 531, 604, 673, 894, 1064, 1395
HspAI GCGC 1 cut(s) 300
Ksp22I TGATCA 1 cut(s) 727
Kzo9I GATC 7 cut(s) 411, 605, 636, 727, 979, 1255, 1437
LmnI GCTCC 5 cut(s) 393, 808, 1181, 1392, 1414
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 3 cut(s) 236, 308, 757
MaeI CTAG 8 cut(s) 27, 141, 521, 884, 939, 1185, 1220, 1413
MaeII ACGT 6 cut(s) 353, 437, 646, 925, 1173, 1420
MaeIII GTNAC 2 cut(s) 622, 879
MalI GATC 7 cut(s) 413, 607, 638, 729, 981, 1257, 1439
MboI GATC 7 cut(s) 411, 605, 636, 727, 979, 1255, 1437
MflI RGATCY 1 cut(s) 1437
MhlI GDGCHC 1 cut(s) 1131
MlyI GAGTC 2 cut(s) 44, 887
MnlI CCTC 7 cut(s) 40, 136, 201, 490, 642, 646, 808
MroXI GAANNNNTTC 1 cut(s) 1420
MseI TTAA 3 cut(s) 173, 456, 1068
MslI CAYNNNNRTG 1 cut(s) 645
MspA1I CMGCKG 1 cut(s) 619
Mva1269I GAATGC 1 cut(s) 954
MvnI CGCG 1 cut(s) 900
MwoI GCNNNNNNNGC 3 cut(s) 137, 939, 1150
NcoI CCATGG 1 cut(s) 1391
NdeI CATATG 1 cut(s) 1285
NdeII GATC 7 cut(s) 411, 605, 636, 727, 979, 1255, 1437
NheI GCTAGC 2 cut(s) 520, 938
NlaIII CATG 7 cut(s) 254, 531, 604, 673, 894, 1064, 1395
NlaIV GGNNCC 3 cut(s) 389, 996, 1130
NmeAIII GCCGAG 1 cut(s) 796
NmuCI GTSAC 1 cut(s) 879
NsbI TGCGCA 1 cut(s) 301
NspV TTCGAA 1 cut(s) 831
PctI GAATGC 1 cut(s) 954
PdmI GAANNNNTTC 1 cut(s) 1420
PfeI GAWTC 3 cut(s) 666, 841, 1051
PflMI CCANNNNNTGG 1 cut(s) 1364
PkrI GCNGC 4 cut(s) 109, 112, 377, 902
PleI GAGTC 2 cut(s) 44, 886
PpsI GAGTC 2 cut(s) 44, 886
PpuMI RGGWCCY 1 cut(s) 995
PsiI TTATAA 1 cut(s) 428
Psp1406I AACGTT 1 cut(s) 925
Psp5II RGGWCCY 1 cut(s) 995
PspFI CCCAGC 1 cut(s) 991
PspN4I GGNNCC 3 cut(s) 389, 996, 1130
PspPI GGNCC 4 cut(s) 597, 613, 995, 1398
PspPPI RGGWCCY 1 cut(s) 995
PstI CTGCAG 1 cut(s) 1146
PsuI RGATCY 1 cut(s) 1437
PvuII CAGCTG 1 cut(s) 619
RsaI GTAC 5 cut(s) 186, 421, 724, 1021, 1236
RsaNI GTAC 5 cut(s) 185, 420, 723, 1020, 1235
RseI CAYNNNNRTG 1 cut(s) 645
SalI GTCGAC 1 cut(s) 288
SaqAI TTAA 3 cut(s) 173, 456, 1068
SatI GCNGC 4 cut(s) 108, 111, 376, 901
Sau3AI GATC 7 cut(s) 411, 605, 636, 727, 979, 1255, 1437
Sau96I GGNCC 4 cut(s) 597, 613, 995, 1398
ScaI AGTACT 2 cut(s) 724, 1021
SchI GAGTC 2 cut(s) 44, 887
SduI GDGCHC 1 cut(s) 1131
SfaNI GCATC 3 cut(s) 236, 308, 757
SfcI CTRYAG 1 cut(s) 1142
SfuI TTCGAA 1 cut(s) 831
SinI GGWCC 3 cut(s) 597, 613, 995
SmiMI CAYNNNNRTG 1 cut(s) 645
SpeI ACTAGT 1 cut(s) 883
SsiI CCGC 5 cut(s) 110, 376, 900, 1153, 1232
SspI AATATT 1 cut(s) 578
SspMI CTAG 8 cut(s) 27, 141, 521, 884, 939, 1185, 1220, 1413
StyI CCWWGG 2 cut(s) 593, 1391
TaaI ACNGT 3 cut(s) 84, 572, 1133
TaiI ACGT 6 cut(s) 356, 440, 649, 928, 1176, 1423
TaqI TCGA 5 cut(s) 215, 289, 316, 831, 921
TatI WGTACW 2 cut(s) 722, 1019
TauI GCSGC 3 cut(s) 113, 378, 903
TfiI GAWTC 3 cut(s) 666, 841, 1051
Tru1I TTAA 3 cut(s) 173, 456, 1068
Tru9I TTAA 3 cut(s) 173, 456, 1068
TscAI CASTG 2 cut(s) 87, 1450
TseFI GTSAC 1 cut(s) 879
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 879
TspDTI ATGAA 8 cut(s) 51, 222, 279, 462, 658, 1049, 1098, 1358
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 2 cut(s) 87, 1450
Van91I CCANNNNNTGG 1 cut(s) 1364
VpaK11BI GGWCC 3 cut(s) 597, 613, 995
XapI RAATTY 3 cut(s) 38, 795, 833
XcmI CCANNNNNNNNNTGG 2 cut(s) 1042, 1345
XmiI GTMKAC 2 cut(s) 247, 289
XmnI GAANNNNTTC 1 cut(s) 1420
XspI CTAG 8 cut(s) 27, 141, 521, 884, 939, 1185, 1220, 1413
ZrmI AGTACT 2 cut(s) 724, 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.