Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Forward (+)

3323465 .. 3324624

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016029

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAAGAGTTTCTTCAATTTGATGAAAAAAGTTCCACGAGTGCTAGCAACATGGAATGACTTGGTTCTCTGCTGCACATATAATGAAGATCACTGTGATTATAACATTGGCAATCCACGGACCATGCAACTGGTTAGTCTTCCTCCCACACCTCGATACCGCCCTCTAGAGCCTGCTGTGGGATTCATGTGTGAGCCTTACTATAAGGAAGAAGAAGACAGTACTGTTGTCGTTGAAAGTGATCAACAAGAAGAAGAAAGGAAGGTAATTAAAGCTAATGCCAATGAGACTGCTGAATGGAGAGACTCAGTAGTGTCATGTCGACAAGGCTTTATTTTTGGCCAACTTGGTCTGAATTTGGCGTTGCTACCAATGGAATGCTATATTGGAATGCTACGAATGGTGATCTACTTGGGTTGGGACCGGTACGTCCGCGCTACGACCGGAGCTAGGCTATTGATTTGGGAGTTGAATAAAGAAGAACTAGAACAAATGGCGGTAGAAGGGGGTGGAAAACTGGGTCGGGAACATAGGATGACTAATAATATACTGGACCAAGAACTTCCGGAGGGTGCTAATAGGATGGGAATGAGGAAGGTTGCGAGGGATATATCAAAATCAAGAGAGAACAAAGGTGAAGAACACCAAAGATGGGATGTTGTAAATGTAGAGGAGGGTATGGGTTTTCAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

232

Amino Acids

26.69

Weight (kDa)

5.22

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
AasI	GACNNNNNNGTC	1 cut(s)	428
AccI	GTMKAC	1 cut(s)	322
AccII	CGCG	1 cut(s)	435
AccIII	TCCGGA	1 cut(s)	565
AciI	CCGC	3 cut(s)	160, 433, 497
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	355
AfaI	GTAC	2 cut(s)	223, 428
AfiI	CCNNNNNNNGG	3 cut(s)	179, 450, 652
AgeI	ACCGGT	1 cut(s)	423
AgsI	TTSAA	4 cut(s)	16, 236, 472, 689
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	3 cut(s)	275, 449, 692
AluI	AGCT	3 cut(s)	275, 449, 692
Alw26I	GTCTC	2 cut(s)	281, 297
Aor13HI	TCCGGA	1 cut(s)	565
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	355
AsiGI	ACCGGT	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	437
AspS9I	GGNCC	3 cut(s)	120, 421, 553
AsuHPI	GGTGA	2 cut(s)	415, 647
AsuNHI	GCTAGC	1 cut(s)	43
AvaII	GGWCC	3 cut(s)	120, 421, 553
BalI	TGGCCA	1 cut(s)	342
BauI	CACGAG	1 cut(s)	36
BbsI	GAAGAC	2 cut(s)	131, 222
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	2 cut(s)	577, 645
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	2 cut(s)	281, 297
BfaI	CTAG	4 cut(s)	44, 167, 450, 485
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
BmcAI	AGTACT	1 cut(s)	223
Bme18I	GGWCC	3 cut(s)	120, 421, 553
BmgT120I	GGNCC	3 cut(s)	120, 421, 553
BmiI	GGNNCC	1 cut(s)	422
BmrI	ACTGGG	1 cut(s)	527
BmtI	GCTAGC	1 cut(s)	47
BmuI	ACTGGG	1 cut(s)	527
BpiI	GAAGAC	2 cut(s)	131, 222
BsaJI	CCNNGG	1 cut(s)	116
BsaWI	WCCGGW	3 cut(s)	423, 443, 565
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 450, 652
Bse118I	RCCGGY	1 cut(s)	423
Bse1I	ACTGG	3 cut(s)	135, 522, 555
BseAI	TCCGGA	1 cut(s)	565
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	3 cut(s)	540, 588, 661
BseLI	CCNNNNNNNGG	3 cut(s)	179, 450, 652
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	3 cut(s)	135, 522, 555
BseRI	GAGGAG	1 cut(s)	686
BseXI	GCAGC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	435
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	1 cut(s)	342
BshTI	ACCGGT	1 cut(s)	423
BsiEI	CGRYCG	1 cut(s)	444
BsiSI	CCGG	3 cut(s)	424, 444, 566
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	3 cut(s)	179, 450, 652
BsmAI	GTCTC	2 cut(s)	281, 297
BsmFI	GGGAC	1 cut(s)	434
BsmI	GAATGC	2 cut(s)	383, 396
BsnI	GGCC	1 cut(s)	342
Bsp13I	TCCGGA	1 cut(s)	565
Bsp143I	GATC	3 cut(s)	88, 241, 405
BspACI	CCGC	3 cut(s)	160, 433, 497
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	320
BspEI	TCCGGA	1 cut(s)	565
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	422
BspOI	GCTAGC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	423
BsrI	ACTGG	3 cut(s)	135, 522, 555
BssAI	RCCGGY	1 cut(s)	423
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	3 cut(s)	88, 241, 405
BssSI	CACGAG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	36
Bst4CI	ACNGT	3 cut(s)	95, 221, 226
BstC8I	GCNNGC	2 cut(s)	45, 174
BstDEI	CTNAG	1 cut(s)	307
BstDSI	CCRYGG	1 cut(s)	116
BstF5I	GGATG	3 cut(s)	540, 588, 661
BstFNI	CGCG	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	437
BstKTI	GATC	3 cut(s)	91, 244, 408
BstMAI	GTCTC	2 cut(s)	281, 297
BstMBI	GATC	3 cut(s)	88, 241, 405
BstMCI	CGRYCG	1 cut(s)	444
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	2 cut(s)	131, 222
BstXI	CCANNNNNNTGG	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	116
BtsCI	GGATG	3 cut(s)	540, 588, 661
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	2 cut(s)	45, 174
CfoI	GCGC	1 cut(s)	437
Cfr10I	RCCGGY	1 cut(s)	423
Cfr13I	GGNCC	3 cut(s)	120, 421, 553
Csp6I	GTAC	2 cut(s)	222, 427
CspAI	ACCGGT	1 cut(s)	423
CviAII	CATG	4 cut(s)	51, 124, 187, 318
CviJI	RGCY	8 cut(s)	172, 196, 275, 330, 342, 449, 454, 692
CviKI_1	RGCY	8 cut(s)	172, 196, 275, 330, 342, 449, 454, 692
CviQI	GTAC	2 cut(s)	222, 427
DdeI	CTNAG	1 cut(s)	307
DpnI	GATC	3 cut(s)	90, 243, 407
DpnII	GATC	3 cut(s)	88, 241, 405
DrdI	GACNNNNNNGTC	1 cut(s)	428
DseDI	GACNNNNNNGTC	1 cut(s)	428
EaeI	YGGCCR	1 cut(s)	340
Eco47I	GGWCC	3 cut(s)	120, 421, 553
FaeI	CATG	4 cut(s)	54, 127, 190, 321
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	4 cut(s)	50, 123, 186, 317
FbaI	TGATCA	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	3 cut(s)	547, 595, 668
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	4 cut(s)	44, 167, 450, 485
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	3 cut(s)	424, 444, 566
HhaI	GCGC	1 cut(s)	437
Hin1II	CATG	4 cut(s)	54, 127, 190, 321
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HincII	GTYRAC	1 cut(s)	323
HindII	GTYRAC	1 cut(s)	323
HindIII	AAGCTT	1 cut(s)	690
HinfI	GANTC	2 cut(s)	183, 305
HpaII	CCGG	3 cut(s)	424, 444, 566
HphI	GGTGA	2 cut(s)	415, 647
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	4 cut(s)	167, 524, 566, 621
Hpy8I	GTNNAC	1 cut(s)	323
HpyAV	CCTTC	3 cut(s)	256, 497, 589
HpyCH4III	ACNGT	3 cut(s)	95, 221, 226
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	2 cut(s)	75, 127
HpyF3I	CTNAG	1 cut(s)	307
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	4 cut(s)	54, 127, 190, 321
HspAI	GCGC	1 cut(s)	435
Kpn2I	TCCGGA	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	88, 241, 405
LmnI	GCTCC	1 cut(s)	446
LpnPI	CCDG	7 cut(s)	116, 186, 437, 457, 503, 536, 579
Lsp1109I	GCAGC	1 cut(s)	59
MaeI	CTAG	4 cut(s)	44, 167, 450, 485
MaeII	ACGT	1 cut(s)	429
MalI	GATC	3 cut(s)	90, 243, 407
MboI	GATC	3 cut(s)	88, 241, 405
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	3 cut(s)	16, 267, 355
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	8 cut(s)	153, 162, 174, 562, 585, 597, 664, 667
Mox20I	TGGCCA	1 cut(s)	342
MroI	TCCGGA	1 cut(s)	565
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	342
MspI	CCGG	3 cut(s)	424, 444, 566
Mva1269I	GAATGC	2 cut(s)	383, 396
MvnI	CGCG	1 cut(s)	435
NdeII	GATC	3 cut(s)	88, 241, 405
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	4 cut(s)	54, 127, 190, 321
NlaIV	GGNNCC	1 cut(s)	422
PctI	GAATGC	2 cut(s)	383, 396
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	183
PinAI	ACCGGT	1 cut(s)	423
PkrI	GCNGC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PsiI	TTATAA	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	3 cut(s)	120, 421, 553
RsaI	GTAC	2 cut(s)	223, 428
RsaNI	GTAC	2 cut(s)	222, 427
SalI	GTCGAC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	3 cut(s)	88, 241, 405
Sau96I	GGNCC	3 cut(s)	120, 421, 553
ScaI	AGTACT	1 cut(s)	223
SchI	GAGTC	1 cut(s)	299
SetI	ASST	8 cut(s)	154, 267, 277, 432, 451, 600, 637, 694
SinI	GGWCC	3 cut(s)	120, 421, 553
Sse9I	AATT	3 cut(s)	16, 267, 355
SsiI	CCGC	3 cut(s)	160, 433, 497
SspMI	CTAG	4 cut(s)	44, 167, 450, 485
TaaI	ACNGT	3 cut(s)	95, 221, 226
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	2 cut(s)	154, 322
TasI	AATT	3 cut(s)	16, 267, 355
TatI	WGTACW	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	98
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	4 cut(s)	17, 38, 99, 175
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	98
VpaK11BI	GGWCC	3 cut(s)	120, 421, 553
XapI	RAATTY	1 cut(s)	355
XbaI	TCTAGA	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	4 cut(s)	44, 167, 450, 485
ZrmI	AGTACT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.