Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Forward (+)

91289680 .. 91290639

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG531200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAAAGGTGACAGAAATCCTGCCACTAAAAGAAAATATAGTAGAATATCAGTACCAACTGATTCCTCTGATGGCTTAAGAAGATCGAAGAGGTCAGCTGCGAAAAGATCATCATCAACTAATATATATGATCTCCCGAAGGAATTATTAGTTGAAATCCTTTCTCGACTGCCTTGCGCAAAATCTGTCTGTCGATGTAAGTATGTTTCAAAGAGTTGGTGGACTCTCATGTCAGATCCTTATTTTGTTGGCCGCTTTTTGTGGCTACAGAGAAATAACCAAACCCTAATACCTGGCACTATTATAAGTAATAAGGCCGAAGAACTTACCACAAACGACGTGCTGGCAAGATTAAGGAATTTCTTCAAACTCAAGAAGAAGAAATTACAAGTGCTAGCTACATGGAATGACTTGGTTCTCTGCTGCACAGTCAGCGGAGGCTATTACTGTTACTACGTCTGCAATCCACGGACCATGCAACTGGTTCATCTTCCTCGCATCGCTCAATACCCTGGTCTCCCTGATATATTCGACTCTCAGCCTGTGGGATTCATCTGTGAGCCCTACAATAAGGAAGACAGGGTCGTCGTCCACAGTGATCAACAACAAGAACAAAAAGAAGAAAGGAAGGTAATTAAAATTAATGCCGAGTACAAGTGTAAGGTTGTCAGAATTCTTCCTCCTCATGAGACAATAAAACCTTGTTTCGAATTCAAGATTCAGGTATTCTCTAGTGAGACTGGTGAATGGAGAGAATCACTAGTGGCATGTCCACAAGGCTTTATTTATAAACAACTCGGGGATGTATCTGTCTGTGCTACCAATGGCATGGTATATTGGAATAATGCTGACTATGGTGATCTGCTCGTGCTGGAACCGTTGATCAACAACAAGAGTACTACTACTACTGCCAATGATGATTCTGGCTATCAATTTCGTGTTATTAAATATGTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

319

Amino Acids

36.72

Weight (kDa)

9.19

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	43 - 81	4.4e-08	F-box-like
b-prop_At3g26010-like	PF24750	120 - 284	5.8e-06	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	305, 789
AasI	GACNNNNNNGTC	2 cut(s)	229, 584
Acc16I	TGCGCA	1 cut(s)	178
AciI	CCGC	2 cut(s)	253, 435
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	3 cut(s)	358, 672, 710
AfaI	GTAC	3 cut(s)	54, 653, 898
AflII	CTTAAG	1 cut(s)	76
AgsI	TTSAA	4 cut(s)	155, 210, 367, 715
AhlI	ACTAGT	1 cut(s)	760
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	2 cut(s)	292, 511
AluBI	AGCT	2 cut(s)	98, 398
AluI	AGCT	2 cut(s)	98, 398
Alw26I	GTCTC	3 cut(s)	521, 683, 731
AlwI	GGATC	1 cut(s)	230
Ama87I	CYCGRG	1 cut(s)	797
AoxI	GGCC	2 cut(s)	250, 315
ApeKI	GCWGC	2 cut(s)	98, 423
ApoI	RAATTY	3 cut(s)	358, 672, 710
AseI	ATTAAT	1 cut(s)	642
Asp700I	GAANNNNTTC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	471
AsuHPI	GGTGA	3 cut(s)	20, 755, 869
AsuII	TTCGAA	1 cut(s)	708
AsuNHI	GCTAGC	1 cut(s)	394
AvaI	CYCGRG	1 cut(s)	797
AvaII	GGWCC	1 cut(s)	471
BanII	GRGCYC	1 cut(s)	564
BauI	CACGAG	1 cut(s)	866
BbsI	GAAGAC	1 cut(s)	582
BbvI	GCAGC	2 cut(s)	85, 410
BccI	CCATC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	156, 190
BciT130I	CCWGG	2 cut(s)	294, 513
BclI	TGATCA	2 cut(s)	598, 882
BcoDI	GTCTC	3 cut(s)	521, 683, 731
BcuI	ACTAGT	1 cut(s)	760
BfaI	CTAG	3 cut(s)	395, 732, 761
BfmI	CTRYAG	1 cut(s)	266
BfrI	CTTAAG	1 cut(s)	76
BisI	GCNGC	3 cut(s)	99, 253, 424
BlsI	GCNGC	3 cut(s)	100, 254, 425
BmcAI	AGTACT	1 cut(s)	898
Bme1390I	CCNGG	2 cut(s)	294, 513
Bme18I	GGWCC	1 cut(s)	471
BmeT110I	CYCGRG	1 cut(s)	797
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	471
BmiI	GGNNCC	1 cut(s)	876
BmrFI	CCNGG	2 cut(s)	294, 513
BmsI	GCATC	1 cut(s)	507
BmtI	GCTAGC	1 cut(s)	398
BpiI	GAAGAC	1 cut(s)	582
Bpu14I	TTCGAA	1 cut(s)	708
BpuEI	CTTGAG	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	112
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	2 cut(s)	467, 511
Bse1I	ACTGG	2 cut(s)	486, 745
Bse8I	GATNNNNATC	1 cut(s)	112
BseBI	CCWGG	2 cut(s)	294, 513
BseDI	CCNNGG	2 cut(s)	467, 511
BseGI	GGATG	1 cut(s)	808
BseJI	GATNNNNATC	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	2 cut(s)	486, 745
BseRI	GAGGAG	1 cut(s)	672
BseXI	GCAGC	2 cut(s)	85, 410
BsgI	GTGCAG	1 cut(s)	409
BshFI	GGCC	2 cut(s)	252, 317
BsiHKCI	CYCGRG	1 cut(s)	797
BsmAI	GTCTC	3 cut(s)	521, 683, 731
BsnI	GGCC	2 cut(s)	252, 317
Bso31I	GGTCTC	1 cut(s)	521
BsoBI	CYCGRG	1 cut(s)	797
Bsp119I	TTCGAA	1 cut(s)	708
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp143I	GATC	7 cut(s)	83, 107, 130, 235, 598, 859, 882
BspACI	CCGC	2 cut(s)	253, 435
BspANI	GGCC	2 cut(s)	252, 317
BspCNI	CTCAG	1 cut(s)	550
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	1 cut(s)	876
BspOI	GCTAGC	1 cut(s)	398
BspPI	GGATC	1 cut(s)	230
BspT104I	TTCGAA	1 cut(s)	708
BspTI	CTTAAG	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	521
BsrI	ACTGG	2 cut(s)	486, 745
BssECI	CCNNGG	2 cut(s)	467, 511
BssMI	GATC	7 cut(s)	83, 107, 130, 235, 598, 859, 882
BssSI	CACGAG	1 cut(s)	866
Bst2BI	CACGAG	1 cut(s)	866
Bst2UI	CCWGG	2 cut(s)	294, 513
Bst4CI	ACNGT	4 cut(s)	430, 449, 596, 879
Bst6I	CTCTTC	1 cut(s)	83
BstAFI	CTTAAG	1 cut(s)	76
BstBI	TTCGAA	1 cut(s)	708
BstC8I	GCNNGC	2 cut(s)	345, 396
BstDEI	CTNAG	1 cut(s)	537
BstDSI	CCRYGG	1 cut(s)	467
BstF5I	GGATG	1 cut(s)	808
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	7 cut(s)	86, 110, 133, 238, 601, 862, 885
BstMAI	GTCTC	3 cut(s)	521, 683, 731
BstMBI	GATC	7 cut(s)	83, 107, 130, 235, 598, 859, 882
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstNI	CCWGG	2 cut(s)	294, 513
BstNSI	RCATGY	1 cut(s)	771
BstSCI	CCNGG	2 cut(s)	292, 511
BstSFI	CTRYAG	1 cut(s)	266
BstV1I	GCAGC	2 cut(s)	85, 410
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	1 cut(s)	235
BstXI	CCANNNNNNTGG	2 cut(s)	481, 829
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	252, 317
BtgI	CCRYGG	1 cut(s)	467
BtgZI	GCGATG	1 cut(s)	484
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	808
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	2 cut(s)	345, 396
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	471
Csp6I	GTAC	3 cut(s)	53, 652, 897
CviAII	CATG	6 cut(s)	229, 402, 475, 686, 768, 829
CviQI	GTAC	3 cut(s)	53, 652, 897
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	7 cut(s)	85, 109, 132, 237, 600, 861, 884
DpnII	GATC	7 cut(s)	83, 107, 130, 235, 598, 859, 882
DrdI	GACNNNNNNGTC	2 cut(s)	229, 584
DseDI	GACNNNNNNGTC	2 cut(s)	229, 584
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	564
Eco31I	GGTCTC	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	797
EcoRI	GAATTC	2 cut(s)	672, 710
EcoRII	CCWGG	2 cut(s)	292, 511
EcoT38I	GRGCYC	1 cut(s)	564
FaeI	CATG	6 cut(s)	232, 405, 478, 689, 771, 832
FatI	CATG	6 cut(s)	228, 401, 474, 685, 767, 828
FbaI	TGATCA	2 cut(s)	598, 882
Fnu4HI	GCNGC	3 cut(s)	99, 253, 424
FokI	GGATG	1 cut(s)	815
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	3 cut(s)	99, 253, 424
FspBI	CTAG	3 cut(s)	395, 732, 761
FspI	TGCGCA	1 cut(s)	178
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	3 cut(s)	99, 253, 424
HaeIII	GGCC	2 cut(s)	252, 317
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	6 cut(s)	232, 405, 478, 689, 771, 832
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	7 cut(s)	62, 223, 533, 549, 718, 755, 920
HphI	GGTGA	3 cut(s)	20, 755, 869
Hpy166II	GTNNAC	3 cut(s)	222, 592, 773
Hpy188I	TCNGA	3 cut(s)	70, 235, 671
Hpy188III	TCNNGA	5 cut(s)	136, 165, 373, 686, 715
Hpy8I	GTNNAC	3 cut(s)	222, 592, 773
Hpy99I	CGWCG	2 cut(s)	341, 590
HpyAV	CCTTC	2 cut(s)	133, 622
HpyCH4III	ACNGT	4 cut(s)	430, 449, 596, 879
HpyCH4IV	ACGT	2 cut(s)	339, 456
HpyCH4V	TGCA	3 cut(s)	426, 462, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
HpyF3I	CTNAG	1 cut(s)	537
HpySE526I	ACGT	2 cut(s)	339, 456
Hsp92II	CATG	6 cut(s)	232, 405, 478, 689, 771, 832
HspAI	GCGC	1 cut(s)	177
Ksp22I	TGATCA	2 cut(s)	598, 882
Kzo9I	GATC	7 cut(s)	83, 107, 130, 235, 598, 859, 882
Lsp1109I	GCAGC	2 cut(s)	85, 410
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	3 cut(s)	395, 732, 761
MaeII	ACGT	2 cut(s)	339, 456
MaeIII	GTNAC	2 cut(s)	8, 449
MalI	GATC	7 cut(s)	85, 109, 132, 237, 600, 861, 884
MboI	GATC	7 cut(s)	83, 107, 130, 235, 598, 859, 882
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	564
MluCI	AATT	8 cut(s)	143, 358, 383, 633, 639, 672, 710, 932
MlyI	GAGTC	2 cut(s)	217, 527
MnlI	CCTC	6 cut(s)	76, 84, 431, 504, 690, 693
MroXI	GAANNNNTTC	1 cut(s)	362
MseI	TTAA	5 cut(s)	77, 353, 636, 642, 945
MspA1I	CMGCKG	2 cut(s)	98, 435
MspCI	CTTAAG	1 cut(s)	76
MspR9I	CCNGG	2 cut(s)	294, 513
MvaI	CCWGG	2 cut(s)	294, 513
MwoI	GCNNNNNNNGC	1 cut(s)	432
NdeII	GATC	7 cut(s)	83, 107, 130, 235, 598, 859, 882
NheI	GCTAGC	1 cut(s)	394
NlaIII	CATG	6 cut(s)	232, 405, 478, 689, 771, 832
NlaIV	GGNNCC	1 cut(s)	876
NmeAIII	GCCGAG	1 cut(s)	673
NmuCI	GTSAC	1 cut(s)	8
NsbI	TGCGCA	1 cut(s)	178
NspI	RCATGY	1 cut(s)	771
NspV	TTCGAA	1 cut(s)	708
PagI	TCATGA	1 cut(s)	685
PdmI	GAANNNNTTC	1 cut(s)	362
PfeI	GAWTC	5 cut(s)	62, 549, 718, 755, 920
PflFI	GACNNNGTC	1 cut(s)	581
PkrI	GCNGC	3 cut(s)	100, 254, 425
PleI	GAGTC	2 cut(s)	217, 527
PpsI	GAGTC	2 cut(s)	217, 527
PshBI	ATTAAT	1 cut(s)	642
PsiI	TTATAA	2 cut(s)	305, 789
Psp6I	CCWGG	2 cut(s)	292, 511
PspGI	CCWGG	2 cut(s)	292, 511
PspN4I	GGNNCC	1 cut(s)	876
PspPI	GGNCC	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	235
PsyI	GACNNNGTC	1 cut(s)	581
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	3 cut(s)	54, 653, 898
RsaNI	GTAC	3 cut(s)	53, 652, 897
SaqAI	TTAA	5 cut(s)	77, 353, 636, 642, 945
SatI	GCNGC	3 cut(s)	99, 253, 424
Sau3AI	GATC	7 cut(s)	83, 107, 130, 235, 598, 859, 882
Sau96I	GGNCC	1 cut(s)	471
ScaI	AGTACT	1 cut(s)	898
SchI	GAGTC	2 cut(s)	217, 527
ScrFI	CCNGG	2 cut(s)	294, 513
SduI	GDGCHC	1 cut(s)	564
SfaNI	GCATC	1 cut(s)	507
SfcI	CTRYAG	1 cut(s)	266
SfuI	TTCGAA	1 cut(s)	708
SinI	GGWCC	1 cut(s)	471
SmlI	CTYRAG	2 cut(s)	76, 371
SmoI	CTYRAG	2 cut(s)	76, 371
SpeI	ACTAGT	1 cut(s)	760
Sse9I	AATT	8 cut(s)	143, 358, 383, 633, 639, 672, 710, 932
SsiI	CCGC	2 cut(s)	253, 435
SspMI	CTAG	3 cut(s)	395, 732, 761
StyD4I	CCNGG	2 cut(s)	292, 511
TaaI	ACNGT	4 cut(s)	430, 449, 596, 879
TaiI	ACGT	2 cut(s)	342, 459
TaqI	TCGA	5 cut(s)	86, 166, 193, 531, 708
TasI	AATT	8 cut(s)	143, 358, 383, 633, 639, 672, 710, 932
TatI	WGTACW	2 cut(s)	651, 896
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	5 cut(s)	62, 549, 718, 755, 920
Tru1I	TTAA	5 cut(s)	77, 353, 636, 642, 945
Tru9I	TTAA	5 cut(s)	77, 353, 636, 642, 945
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	98, 423
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	3 cut(s)	17, 476, 541
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	1 cut(s)	601
Tth111I	GACNNNGTC	1 cut(s)	581
Vha464I	CTTAAG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	471
VspI	ATTAAT	1 cut(s)	642
XapI	RAATTY	3 cut(s)	358, 672, 710
XceI	RCATGY	1 cut(s)	771
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	3 cut(s)	395, 732, 761
ZrmI	AGTACT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.