Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Reverse (-)

3357211 .. 3357948

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G003660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAAAAAAGTTCCACGAGTGCTAGCAACATGGAATGACTTGGTTCTCTGCTGCACAGACAATGAAGATCACTGTGATTATTACATCGGCAATCCACGGACCATGCAACTGGTTATTAGTCTTCCTCCCACAGCTCGATACCGCCCTCTAGAGCCTGCCGTGGGATTCATGTGTGAGCCTTACTATAAGGAAGAAGAAGACAATACTGTTGTCGTTGAAAGTGATCAACAAGAAGAAGAAAGGAAGGTAATTAAAACTAATGCCAAGTATAAGTGCAGGATTGTGAGAATTCTTCCTCCTGATGAGACGAGTGAACGTTGTTTCGAATTTAACATTCAAGTCTTCTCTAGTGAGACTGGTGAACGGAGAGACTCAGTAGTGTCATGTCGACAAGGCTTTGTTTTAGGCCAACTTGGGTCTGAATTTGGCGTTGCTACCAATGGAATGCTATATTGGAATGCTACGAATGGTGATCTACTTGGGTTGGGACCGGTGATGACCATCAACAGGAGTACTACTGCCAATGGTGATAATGAATGCTATCAATTTCATGTTATTGAATTTGATCAGCATGATGATGTTCCTTATCCTAAACCTTATTGCCTTGGCTTGCACCGAGGACGTCTGCAGTTGGTGCGTAAGGTGTGTGATCAGGTCCGCGATACGACCGGAGCTAGGCTATTGATTTGGGAGTTGAATAAAGAAGAACTAGAACAAAAGGCGGTGGAGTGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

245

Amino Acids

28.11

Weight (kDa)

5.02

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	625
AccI	GTMKAC	1 cut(s)	388
AccII	CGCG	1 cut(s)	660
AciI	CCGC	3 cut(s)	142, 658, 722
AclI	AACGTT	1 cut(s)	316
AcsI	RAATTY	4 cut(s)	288, 326, 422, 560
AcyI	GRCGYC	1 cut(s)	622
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	3 cut(s)	161, 507, 675
AgeI	ACCGGT	1 cut(s)	490
AgsI	TTSAA	4 cut(s)	218, 338, 560, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	436, 468
AluBI	AGCT	2 cut(s)	134, 674
AluI	AGCT	2 cut(s)	134, 674
Alw26I	GTCTC	3 cut(s)	299, 347, 363
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	4 cut(s)	288, 326, 422, 560
AsiGI	ACCGGT	1 cut(s)	490
AspS9I	GGNCC	3 cut(s)	99, 488, 655
AsuHPI	GGTGA	4 cut(s)	371, 482, 505, 539
AsuII	TTCGAA	1 cut(s)	324
AsuNHI	GCTAGC	1 cut(s)	22
AvaII	GGWCC	3 cut(s)	99, 488, 655
BauI	CACGAG	1 cut(s)	15
BbsI	GAAGAC	3 cut(s)	113, 204, 334
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	509
BceAI	ACGGC	1 cut(s)	143
BclI	TGATCA	3 cut(s)	223, 565, 649
BcoDI	GTCTC	3 cut(s)	299, 347, 363
BfaI	CTAG	5 cut(s)	23, 149, 348, 675, 710
BfmI	CTRYAG	1 cut(s)	626
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
BmcAI	AGTACT	1 cut(s)	514
Bme18I	GGWCC	3 cut(s)	99, 488, 655
BmgT120I	GGNCC	3 cut(s)	99, 488, 655
BmiI	GGNNCC	1 cut(s)	489
BmtI	GCTAGC	1 cut(s)	26
BpiI	GAAGAC	3 cut(s)	113, 204, 334
Bpu14I	TTCGAA	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	500
BsaHI	GRCGYC	1 cut(s)	622
BsaJI	CCNNGG	4 cut(s)	95, 159, 604, 616
BsaWI	WCCGGW	2 cut(s)	490, 668
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 507, 675
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	2 cut(s)	114, 361
Bse8I	GATNNNNATC	1 cut(s)	500
BseDI	CCNNGG	4 cut(s)	95, 159, 604, 616
BseJI	GATNNNNATC	1 cut(s)	500
BseLI	CCNNNNNNNGG	3 cut(s)	161, 507, 675
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	114, 361
BseXI	GCAGC	1 cut(s)	38
BsgI	GTGCAG	2 cut(s)	37, 295
Bsh1236I	CGCG	1 cut(s)	660
Bsh1285I	CGRYCG	1 cut(s)	669
BshFI	GGCC	1 cut(s)	408
BshTI	ACCGGT	1 cut(s)	490
BsiEI	CGRYCG	1 cut(s)	669
BsiSI	CCGG	2 cut(s)	491, 669
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	3 cut(s)	161, 507, 675
BsmAI	GTCTC	3 cut(s)	299, 347, 363
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	501
BsmI	GAATGC	3 cut(s)	450, 463, 542
BsnI	GGCC	1 cut(s)	408
Bsp119I	TTCGAA	1 cut(s)	324
Bsp143I	GATC	5 cut(s)	67, 223, 472, 565, 649
BspACI	CCGC	3 cut(s)	142, 658, 722
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	489
BspMAI	CTGCAG	1 cut(s)	630
BspOI	GCTAGC	1 cut(s)	26
BspT104I	TTCGAA	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	490
BsrI	ACTGG	2 cut(s)	114, 361
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	4 cut(s)	95, 159, 604, 616
BssMI	GATC	5 cut(s)	67, 223, 472, 565, 649
BssNI	GRCGYC	1 cut(s)	622
BssSI	CACGAG	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	604
Bst2BI	CACGAG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	74, 208
BstACI	GRCGYC	1 cut(s)	622
BstAPI	GCANNNNNTGC	1 cut(s)	634
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	3 cut(s)	24, 156, 611
BstDEI	CTNAG	1 cut(s)	373
BstDSI	CCRYGG	2 cut(s)	95, 159
BstFNI	CGCG	1 cut(s)	660
BstKTI	GATC	5 cut(s)	70, 226, 475, 568, 652
BstMAI	GTCTC	3 cut(s)	299, 347, 363
BstMBI	GATC	5 cut(s)	67, 223, 472, 565, 649
BstMCI	CGRYCG	1 cut(s)	669
BstMWI	GCNNNNNNNGC	1 cut(s)	634
BstSFI	CTRYAG	1 cut(s)	626
BstUI	CGCG	1 cut(s)	660
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	3 cut(s)	113, 204, 334
BstXI	CCANNNNNNTGG	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	408
BtgI	CCRYGG	2 cut(s)	95, 159
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	3 cut(s)	24, 156, 611
Cfr10I	RCCGGY	1 cut(s)	490
Cfr13I	GGNCC	3 cut(s)	99, 488, 655
Csp6I	GTAC	1 cut(s)	513
CspAI	ACCGGT	1 cut(s)	490
CviAII	CATG	6 cut(s)	30, 103, 169, 384, 551, 572
CviJI	RGCY	8 cut(s)	134, 154, 178, 396, 408, 609, 674, 679
CviKI_1	RGCY	8 cut(s)	134, 154, 178, 396, 408, 609, 674, 679
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	1 cut(s)	373
DpnI	GATC	5 cut(s)	69, 225, 474, 567, 651
DpnII	GATC	5 cut(s)	67, 223, 472, 565, 649
Eco130I	CCWWGG	1 cut(s)	604
Eco47I	GGWCC	3 cut(s)	99, 488, 655
EcoRI	GAATTC	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	604
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	6 cut(s)	33, 106, 172, 387, 554, 575
FaiI	YATR	9 cut(s)	31, 104, 170, 186, 270, 385, 451, 552, 573
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	6 cut(s)	29, 102, 168, 383, 550, 571
FbaI	TGATCA	3 cut(s)	223, 565, 649
FblI	GTMKAC	1 cut(s)	388
Fnu4HI	GCNGC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	52
FspBI	CTAG	5 cut(s)	23, 149, 348, 675, 710
GluI	GCNGC	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	2 cut(s)	491, 669
Hin1I	GRCGYC	1 cut(s)	622
Hin1II	CATG	6 cut(s)	33, 106, 172, 387, 554, 575
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HinfI	GANTC	2 cut(s)	165, 371
HpaII	CCGG	2 cut(s)	491, 669
HphI	GGTGA	4 cut(s)	371, 482, 505, 539
Hpy166II	GTNNAC	3 cut(s)	314, 362, 389
Hpy188I	TCNGA	2 cut(s)	421, 737
Hpy188III	TCNNGA	2 cut(s)	149, 299
Hpy8I	GTNNAC	3 cut(s)	314, 362, 389
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	2 cut(s)	74, 208
HpyCH4IV	ACGT	2 cut(s)	316, 622
HpyCH4V	TGCA	5 cut(s)	54, 106, 276, 613, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	634
HpyF3I	CTNAG	1 cut(s)	373
HpySE526I	ACGT	2 cut(s)	316, 622
Hsp92I	GRCGYC	1 cut(s)	622
Hsp92II	CATG	6 cut(s)	33, 106, 172, 387, 554, 575
Ksp22I	TGATCA	3 cut(s)	223, 565, 649
Kzo9I	GATC	5 cut(s)	67, 223, 472, 565, 649
LmnI	GCTCC	1 cut(s)	671
LpnPI	CCDG	9 cut(s)	95, 168, 262, 312, 342, 493, 504, 638, 682
Lsp1109I	GCAGC	1 cut(s)	38
MaeI	CTAG	5 cut(s)	23, 149, 348, 675, 710
MaeII	ACGT	2 cut(s)	316, 622
MalI	GATC	5 cut(s)	69, 225, 474, 567, 651
MboI	GATC	5 cut(s)	67, 223, 472, 565, 649
MluCI	AATT	6 cut(s)	249, 288, 326, 422, 545, 560
MlyI	GAGTC	1 cut(s)	365
MnlI	CCTC	4 cut(s)	135, 156, 306, 611
MseI	TTAA	2 cut(s)	252, 330
MslI	CAYNNNNRTG	1 cut(s)	576
MspI	CCGG	2 cut(s)	491, 669
Mva1269I	GAATGC	3 cut(s)	450, 463, 542
MvnI	CGCG	1 cut(s)	660
MwoI	GCNNNNNNNGC	1 cut(s)	634
NdeII	GATC	5 cut(s)	67, 223, 472, 565, 649
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	6 cut(s)	33, 106, 172, 387, 554, 575
NlaIV	GGNNCC	1 cut(s)	489
NspV	TTCGAA	1 cut(s)	324
PctI	GAATGC	3 cut(s)	450, 463, 542
PfeI	GAWTC	1 cut(s)	165
PinAI	ACCGGT	1 cut(s)	490
PkrI	GCNGC	1 cut(s)	53
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
Psp1406I	AACGTT	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	489
PspPI	GGNCC	3 cut(s)	99, 488, 655
PstI	CTGCAG	1 cut(s)	630
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
RseI	CAYNNNNRTG	1 cut(s)	576
SalI	GTCGAC	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	252, 330
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	5 cut(s)	67, 223, 472, 565, 649
Sau96I	GGNCC	3 cut(s)	99, 488, 655
ScaI	AGTACT	1 cut(s)	514
SchI	GAGTC	1 cut(s)	365
SetI	ASST	8 cut(s)	136, 249, 319, 598, 625, 645, 657, 676
SfcI	CTRYAG	1 cut(s)	626
SfuI	TTCGAA	1 cut(s)	324
SinI	GGWCC	3 cut(s)	99, 488, 655
SmiMI	CAYNNNNRTG	1 cut(s)	576
Sse9I	AATT	6 cut(s)	249, 288, 326, 422, 545, 560
SsiI	CCGC	3 cut(s)	142, 658, 722
SspMI	CTAG	5 cut(s)	23, 149, 348, 675, 710
StyI	CCWWGG	1 cut(s)	604
TaaI	ACNGT	2 cut(s)	74, 208
TaiI	ACGT	2 cut(s)	319, 625
TaqI	TCGA	3 cut(s)	136, 324, 388
TasI	AATT	6 cut(s)	249, 288, 326, 422, 545, 560
TatI	WGTACW	1 cut(s)	512
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	2 cut(s)	252, 330
Tru9I	TTAA	2 cut(s)	252, 330
TscAI	CASTG	1 cut(s)	77
TseI	GCWGC	1 cut(s)	51
TspDTI	ATGAA	5 cut(s)	17, 78, 157, 539, 549
TspGWI	ACGGA	2 cut(s)	112, 379
TspRI	CASTG	1 cut(s)	77
VpaK11BI	GGWCC	3 cut(s)	99, 488, 655
XapI	RAATTY	4 cut(s)	288, 326, 422, 560
XbaI	TCTAGA	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	388
XspI	CTAG	5 cut(s)	23, 149, 348, 675, 710
ZraI	GACGTC	1 cut(s)	623
ZrmI	AGTACT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.