Rmu_sc0020026.1_g000001

ribosomal protein L4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020026.1
OG0001837
Physical Location & Seq
Forward (+)
207 .. 653
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020026.1_g000001.1.cds

Sequence Viewer

Length: 447 bp
atgcaacttgttagtcttcctccgatccaacaatgcgattgcagttggggatgtaagcctgctgtgggattcatctgtgagccatactataaggaagaagaagacagacccgccgacaatagtgatcaaaaagaagaagaagaagaaaggaaggtaatcaaaattgatgccgagtataagtgcaaggttgtgagaattcttcatcttgatgacaaggaaaaactttatttcgaattcaagattcaggtcttctctagtgagattggtgaatggagagaatcactagtatcatgtccacacggctttatttattctagactccagtccatatttggctttgctaccaatggaatgctatattggaatgctaggaatggtgatctgcttgggctgggacctttgatgatcaacaacaagagtactcactactacacagaacacttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L4

Protein Analysis

148

Amino Acids

17.31

Weight (kDa)

5.12

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 111
AclWI GGATC 1 cut(s) 19
AcsI RAATTY 2 cut(s) 195, 233
AfaI GTAC 1 cut(s) 421
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 1 cut(s) 238
AhlI ACTAGT 1 cut(s) 283
AjuI GAANNNNNNNTTGG 2 cut(s) 343, 375
AlwI GGATC 1 cut(s) 19
ApoI RAATTY 2 cut(s) 195, 233
AspS9I GGNCC 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 278, 389
AsuII TTCGAA 1 cut(s) 231
AvaII GGWCC 1 cut(s) 395
BbsI GAAGAC 3 cut(s) 8, 108, 241
BceAI ACGGC 1 cut(s) 316
BclI TGATCA 2 cut(s) 124, 405
BcuI ACTAGT 1 cut(s) 283
BfaI CTAG 4 cut(s) 255, 284, 315, 369
BmcAI AGTACT 1 cut(s) 421
Bme18I GGWCC 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 396
BmsI GCATC 1 cut(s) 157
BoxI GACNNNNGTC 1 cut(s) 322
BpiI GAAGAC 3 cut(s) 8, 108, 241
BpmI CTGGAG 1 cut(s) 305
Bpu14I TTCGAA 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 322
BseGI GGATG 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 322
BseYI CCCAGC 1 cut(s) 391
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 408
BsmI GAATGC 2 cut(s) 357, 370
Bsp119I TTCGAA 1 cut(s) 231
Bsp143I GATC 4 cut(s) 24, 124, 379, 405
BspACI CCGC 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 396
BspPI GGATC 1 cut(s) 19
BspT104I TTCGAA 1 cut(s) 231
BsrI ACTGG 1 cut(s) 322
BssMI GATC 4 cut(s) 24, 124, 379, 405
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 60
BstF5I GGATG 1 cut(s) 56
BstKTI GATC 4 cut(s) 27, 127, 382, 408
BstMBI GATC 4 cut(s) 24, 124, 379, 405
BstPAI GACNNNNGTC 1 cut(s) 322
BstV2I GAAGAC 3 cut(s) 8, 108, 241
BtsCI GGATG 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 420
CviAII CATG 1 cut(s) 291
CviJI RGCY 5 cut(s) 58, 82, 303, 336, 391
CviKI_1 RGCY 5 cut(s) 58, 82, 303, 336, 391
CviQI GTAC 1 cut(s) 420
DpnI GATC 4 cut(s) 26, 126, 381, 407
DpnII GATC 4 cut(s) 24, 124, 379, 405
Eco47I GGWCC 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 395
EcoRI GAATTC 2 cut(s) 195, 233
FaeI CATG 1 cut(s) 294
FaiI YATR 6 cut(s) 85, 90, 177, 292, 329, 358
FaqI GGGAC 1 cut(s) 408
FatI CATG 1 cut(s) 290
FauI CCCGC 1 cut(s) 118
FbaI TGATCA 2 cut(s) 124, 405
FokI GGATG 1 cut(s) 63
FspBI CTAG 4 cut(s) 255, 284, 315, 369
GsaI CCCAGC 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 305
Hin1II CATG 1 cut(s) 294
HinfI GANTC 4 cut(s) 69, 241, 278, 318
HphI GGTGA 2 cut(s) 278, 389
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 3 cut(s) 206, 238, 315
Hpy8I GTNNAC 1 cut(s) 296
HpyAV CCTTC 1 cut(s) 145
HpyCH4V TGCA 3 cut(s) 4, 42, 183
Hsp92II CATG 1 cut(s) 294
Ksp22I TGATCA 2 cut(s) 124, 405
Kzo9I GATC 4 cut(s) 24, 124, 379, 405
LpnPI CCDG 4 cut(s) 72, 230, 335, 377
LweI GCATC 1 cut(s) 157
MaeI CTAG 4 cut(s) 255, 284, 315, 369
MalI GATC 4 cut(s) 26, 126, 381, 407
MboI GATC 4 cut(s) 24, 124, 379, 405
MluCI AATT 3 cut(s) 162, 195, 233
MlyI GAGTC 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 1 cut(s) 30
MseI TTAA 1 cut(s) 445
MslI CAYNNNNRTG 1 cut(s) 207
Mva1269I GAATGC 2 cut(s) 357, 370
NdeII GATC 4 cut(s) 24, 124, 379, 405
NlaIII CATG 1 cut(s) 294
NlaIV GGNNCC 1 cut(s) 396
NmeAIII GCCGAG 1 cut(s) 196
NspV TTCGAA 1 cut(s) 231
PctI GAATGC 2 cut(s) 357, 370
PfeI GAWTC 3 cut(s) 69, 241, 278
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
PpuMI RGGWCCY 1 cut(s) 395
PshAI GACNNNNGTC 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 395
PspFI CCCAGC 1 cut(s) 391
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 1 cut(s) 395
PspPPI RGGWCCY 1 cut(s) 395
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 1 cut(s) 445
Sau3AI GATC 4 cut(s) 24, 124, 379, 405
Sau96I GGNCC 1 cut(s) 395
ScaI AGTACT 1 cut(s) 421
SchI GAGTC 1 cut(s) 312
SetI ASST 4 cut(s) 156, 189, 249, 400
SfaNI GCATC 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 231
SinI GGWCC 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 207
SpeI ACTAGT 1 cut(s) 283
Sse9I AATT 3 cut(s) 162, 195, 233
SsiI CCGC 1 cut(s) 111
SspMI CTAG 4 cut(s) 255, 284, 315, 369
TaqI TCGA 1 cut(s) 231
TasI AATT 3 cut(s) 162, 195, 233
TatI WGTACW 1 cut(s) 419
TfiI GAWTC 3 cut(s) 69, 241, 278
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 61, 191
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 2 cut(s) 195, 233
XbaI TCTAGA 1 cut(s) 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 329
XspI CTAG 4 cut(s) 255, 284, 315, 369
ZrmI AGTACT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.