Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004031.1

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Forward (+)

85118 .. 85894

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004031.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atgtcagatccttattttgttggccgctttttgtggctacagagaaataaccaaaccctaatacctggcactattataagtactaaggccgaagaacttaccacaaacgacgtgctggcaagattaaggaatttcttcaaactcaagaagaagaaattacaagtgctagctacatggaatgacttggttctctgctgcacagtcagcggaggctattgctattactacgtctgcaatccacggaccatgcaactggttcatcttcctcgcatcgctcaatgcgctggtctccctgatatattcgactatcagcagcctgtgggattcatctgtgagccctacagtaaggaagacagggtcgtcgtccacagtgatcaacaacaagaacaaaaagaagaaaggaaggtaattaaaattaatgcagagtacaagtgtaaggttgtcagaattcttcctcctcatgagacaataaaaccttgtttcgaattcaagattcaggtattctctagtgagactggtgaatggagagaatcactagtgtcatgtccacaaggctttatttattaccaactcggggatgtatctgtctgtgctaccaatggcatgctatattggaataatgctgactatggtgatctgctcgtgctggaaccgttgatcaacaacaagagtactactactactggctattcatttgggagttggatcaagaaaggggtggagaactctgtcgtcggaggacttacaacatactggacaaagaatttcttggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

258

Amino Acids

29.64

Weight (kDa)

8.25

Isoelectric Point (pI)

24.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
AasI	GACNNNNNNGTC	1 cut(s)	359
AciI	CCGC	2 cut(s)	25, 207
AclWI	GGATC	2 cut(s)	2, 713
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	4 cut(s)	130, 447, 485, 763
AfaI	GTAC	3 cut(s)	82, 428, 673
AfiI	CCNNNNNNNGG	1 cut(s)	574
AgsI	TTSAA	2 cut(s)	139, 490
AhlI	ACTAGT	1 cut(s)	535
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw26I	GTCTC	3 cut(s)	293, 458, 506
AlwI	GGATC	2 cut(s)	2, 713
Ama87I	CYCGRG	1 cut(s)	572
AoxI	GGCC	2 cut(s)	22, 87
ApeKI	GCWGC	2 cut(s)	195, 313
ApoI	RAATTY	4 cut(s)	130, 447, 485, 763
AseI	ATTAAT	1 cut(s)	417
Asp700I	GAANNNNTTC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	530, 644
AsuII	TTCGAA	1 cut(s)	483
AsuNHI	GCTAGC	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	572
AvaII	GGWCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	339
BauI	CACGAG	1 cut(s)	641
BbsI	GAAGAC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	182, 325
BciT130I	CCWGG	1 cut(s)	66
BclI	TGATCA	2 cut(s)	373, 657
BcoDI	GTCTC	3 cut(s)	293, 458, 506
BcuI	ACTAGT	1 cut(s)	535
BfaI	CTAG	3 cut(s)	167, 507, 536
BfmI	CTRYAG	2 cut(s)	38, 340
BisI	GCNGC	3 cut(s)	25, 196, 314
BlsI	GCNGC	3 cut(s)	26, 197, 315
BmcAI	AGTACT	2 cut(s)	82, 673
Bme1390I	CCNGG	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	243
BmeT110I	CYCGRG	1 cut(s)	572
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	651
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	279
BmtI	GCTAGC	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse1I	ACTGG	4 cut(s)	258, 520, 688, 758
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	239
BseGI	GGATG	1 cut(s)	583
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseNI	ACTGG	4 cut(s)	258, 520, 688, 758
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	182, 325
BsgI	GTGCAG	1 cut(s)	181
BshFI	GGCC	2 cut(s)	24, 89
BsiHKCI	CYCGRG	1 cut(s)	572
BslI	CCNNNNNNNGG	1 cut(s)	574
BsmAI	GTCTC	3 cut(s)	293, 458, 506
BsnI	GGCC	2 cut(s)	24, 89
Bso31I	GGTCTC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	572
Bsp119I	TTCGAA	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	5 cut(s)	7, 373, 634, 657, 705
BspACI	CCGC	2 cut(s)	25, 207
BspANI	GGCC	2 cut(s)	24, 89
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	651
BspOI	GCTAGC	1 cut(s)	170
BspPI	GGATC	2 cut(s)	2, 713
BspT104I	TTCGAA	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	293
BsrI	ACTGG	4 cut(s)	258, 520, 688, 758
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	5 cut(s)	7, 373, 634, 657, 705
BssSI	CACGAG	1 cut(s)	641
Bst2BI	CACGAG	1 cut(s)	641
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	4 cut(s)	202, 344, 371, 654
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	3 cut(s)	117, 168, 605
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	583
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	5 cut(s)	10, 376, 637, 660, 708
BstMAI	GTCTC	3 cut(s)	293, 458, 506
BstMBI	GATC	5 cut(s)	7, 373, 634, 657, 705
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 281
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	2 cut(s)	38, 340
BstV1I	GCAGC	2 cut(s)	182, 325
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	24, 89
BtgI	CCRYGG	1 cut(s)	239
BtgZI	GCGATG	1 cut(s)	256
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	583
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	3 cut(s)	117, 168, 605
CciI	TCATGA	1 cut(s)	460
CfoI	GCGC	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	243
Csp6I	GTAC	3 cut(s)	81, 427, 672
CviAII	CATG	5 cut(s)	174, 247, 461, 543, 604
CviJI	RGCY	9 cut(s)	24, 37, 89, 170, 213, 316, 337, 555, 687
CviKI_1	RGCY	9 cut(s)	24, 37, 89, 170, 213, 316, 337, 555, 687
CviQI	GTAC	3 cut(s)	81, 427, 672
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	5 cut(s)	9, 375, 636, 659, 707
DpnII	GATC	5 cut(s)	7, 373, 634, 657, 705
DrdI	GACNNNNNNGTC	1 cut(s)	359
DseDI	GACNNNNNNGTC	1 cut(s)	359
EaeI	YGGCCR	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	339
Eco31I	GGTCTC	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	572
EcoRI	GAATTC	2 cut(s)	447, 485
EcoRII	CCWGG	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	339
FaeI	CATG	5 cut(s)	177, 250, 464, 546, 607
FalI	AAGNNNNNCTT	1 cut(s)	752
FatI	CATG	5 cut(s)	173, 246, 460, 542, 603
FbaI	TGATCA	2 cut(s)	373, 657
Fnu4HI	GCNGC	3 cut(s)	25, 196, 314
FokI	GGATG	1 cut(s)	590
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	3 cut(s)	25, 196, 314
FspBI	CTAG	3 cut(s)	167, 507, 536
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	3 cut(s)	25, 196, 314
HaeIII	GGCC	2 cut(s)	24, 89
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	5 cut(s)	177, 250, 464, 546, 607
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HinfI	GANTC	3 cut(s)	324, 493, 530
HphI	GGTGA	2 cut(s)	530, 644
Hpy166II	GTNNAC	2 cut(s)	367, 548
Hpy188I	TCNGA	3 cut(s)	7, 446, 737
Hpy188III	TCNNGA	4 cut(s)	145, 461, 490, 709
Hpy8I	GTNNAC	2 cut(s)	367, 548
Hpy99I	CGWCG	3 cut(s)	113, 365, 737
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	4 cut(s)	202, 344, 371, 654
HpyCH4IV	ACGT	2 cut(s)	111, 228
HpyCH4V	TGCA	4 cut(s)	198, 234, 250, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 281
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	2 cut(s)	111, 228
Hsp92II	CATG	5 cut(s)	177, 250, 464, 546, 607
HspAI	GCGC	1 cut(s)	282
Ksp22I	TGATCA	2 cut(s)	373, 657
Kzo9I	GATC	5 cut(s)	7, 373, 634, 657, 705
Lsp1109I	GCAGC	2 cut(s)	182, 325
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	3 cut(s)	167, 507, 536
MaeII	ACGT	2 cut(s)	111, 228
MalI	GATC	5 cut(s)	9, 375, 636, 659, 707
MboI	GATC	5 cut(s)	7, 373, 634, 657, 705
MboII	GAAGA	8 cut(s)	104, 127, 160, 163, 254, 362, 407, 443
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	7 cut(s)	130, 155, 408, 414, 447, 485, 763
MmeI	TCCRAC	2 cut(s)	683, 715
MnlI	CCTC	5 cut(s)	203, 276, 465, 468, 731
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	3 cut(s)	125, 411, 417
MspA1I	CMGCKG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	204, 281
NdeII	GATC	5 cut(s)	7, 373, 634, 657, 705
NheI	GCTAGC	1 cut(s)	166
NlaIII	CATG	5 cut(s)	177, 250, 464, 546, 607
NlaIV	GGNNCC	1 cut(s)	651
NspI	RCATGY	1 cut(s)	607
NspV	TTCGAA	1 cut(s)	483
PaeI	GCATGC	1 cut(s)	607
PagI	TCATGA	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	3 cut(s)	324, 493, 530
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	3 cut(s)	26, 197, 315
PshBI	ATTAAT	1 cut(s)	417
PsiI	TTATAA	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	651
PspPI	GGNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	7
PsyI	GACNNNGTC	1 cut(s)	356
RsaI	GTAC	3 cut(s)	82, 428, 673
RsaNI	GTAC	3 cut(s)	81, 427, 672
SaqAI	TTAA	3 cut(s)	125, 411, 417
SatI	GCNGC	3 cut(s)	25, 196, 314
Sau3AI	GATC	5 cut(s)	7, 373, 634, 657, 705
Sau96I	GGNCC	1 cut(s)	243
ScaI	AGTACT	2 cut(s)	82, 673
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	8 cut(s)	67, 114, 172, 231, 408, 441, 478, 501
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	2 cut(s)	38, 340
SfuI	TTCGAA	1 cut(s)	483
SinI	GGWCC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SpeI	ACTAGT	1 cut(s)	535
SphI	GCATGC	1 cut(s)	607
Sse9I	AATT	7 cut(s)	130, 155, 408, 414, 447, 485, 763
SsiI	CCGC	2 cut(s)	25, 207
SspMI	CTAG	3 cut(s)	167, 507, 536
StyD4I	CCNGG	1 cut(s)	64
TaaI	ACNGT	4 cut(s)	202, 344, 371, 654
TaiI	ACGT	2 cut(s)	114, 231
TaqI	TCGA	2 cut(s)	303, 483
TasI	AATT	7 cut(s)	130, 155, 408, 414, 447, 485, 763
TatI	WGTACW	3 cut(s)	80, 426, 671
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	3 cut(s)	324, 493, 530
Tru1I	TTAA	3 cut(s)	125, 411, 417
Tru9I	TTAA	3 cut(s)	125, 411, 417
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	2 cut(s)	195, 313
TspDTI	ATGAA	3 cut(s)	248, 316, 681
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	376
Tth111I	GACNNNGTC	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	243
VspI	ATTAAT	1 cut(s)	417
XapI	RAATTY	4 cut(s)	130, 447, 485, 763
XceI	RCATGY	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	3 cut(s)	167, 507, 536
ZrmI	AGTACT	2 cut(s)	82, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.