Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Reverse (-)

36425850 .. 36426650

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43732.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCTATACTGGATTGCTAAAGATGGTGATCTGCTCGGGCTGGGACCTTTGATGATCAACAACAAGAGTACTACCGCTTGGTCTAATAGTACTGCTGCTAAAAGTGCTGATGGTGATTCGGGATATCAATTTCATGTTATTAAACTTAAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAGGATGAGGATGAGGATGTATCTCGTTCATTATATCACCTCCAGTCTCCCCGTGGACGTGAAGATGAAGATGAAGATGAAAATGAAGATGAAGATGAAGATGAAGATGTACCTCGTTCATTATATCACCTCCAGTCGCACCATGGACGTCTGCAGTTGGTGCAGATGGTGGGGAATGAGGACGGTATTGGAGCTAGGCTCTTTGTTTGGGAGTTAGAAAATGAAGAACTGGAACAAATGGTGACCTCCAGCGAGCAAGTAATTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

157

Amino Acids

17.93

Weight (kDa)

4.05

Isoelectric Point (pI)

58.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	352
AciI	CCGC	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	349
AfaI	GTAC	3 cut(s)	70, 91, 312
AgsI	TTSAA	1 cut(s)	467
AjiI	CACGTC	1 cut(s)	260
AluBI	AGCT	1 cut(s)	395
AluI	AGCT	1 cut(s)	395
Alw26I	GTCTC	1 cut(s)	252
Ama87I	CYCGRG	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	5 cut(s)	38, 125, 230, 320, 454
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	3 cut(s)	17, 104, 361
BclI	TGATCA	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	353
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
BmcAI	AGTACT	2 cut(s)	70, 91
Bme18I	GGWCC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	35
BmgBI	CACGTC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	45
BplI	GAGNNNNNCTC	2 cut(s)	384, 416
BpmI	CTGGAG	3 cut(s)	227, 317, 433
BsaBI	GATNNNNATC	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	349
BsaJI	CCNNGG	2 cut(s)	253, 343
Bse1I	ACTGG	4 cut(s)	14, 244, 334, 435
Bse8I	GATNNNNATC	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	253, 343
BseGI	GGATG	3 cut(s)	211, 217, 223
BseJI	GATNNNNATC	1 cut(s)	27
BseNI	ACTGG	4 cut(s)	14, 244, 334, 435
BseXI	GCAGC	1 cut(s)	82
BseYI	CCCAGC	1 cut(s)	40
BsgI	GTGCAG	1 cut(s)	383
BsiHKCI	CYCGRG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	28, 54
Bsp19I	CCATGG	1 cut(s)	343
BspACI	CCGC	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	45
BspMAI	CTGCAG	1 cut(s)	357
BsrI	ACTGG	4 cut(s)	14, 244, 334, 435
BssECI	CCNNGG	2 cut(s)	253, 343
BssMI	GATC	2 cut(s)	28, 54
BssNI	GRCGYC	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	386
BstACI	GRCGYC	1 cut(s)	349
BstAPI	GCANNNNNTGC	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	455
BstDSI	CCRYGG	2 cut(s)	253, 343
BstEII	GGTNACC	1 cut(s)	442
BstF5I	GGATG	3 cut(s)	211, 217, 223
BstKTI	GATC	2 cut(s)	31, 57
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	2 cut(s)	28, 54
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 361
BstPI	GGTNACC	1 cut(s)	442
BstSFI	CTRYAG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	82
BtgI	CCRYGG	2 cut(s)	253, 343
BtrI	CACGTC	1 cut(s)	260
BtsCI	GGATG	3 cut(s)	211, 217, 223
Cac8I	GCNNGC	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	69, 90, 311
CviAII	CATG	2 cut(s)	134, 344
CviJI	RGCY	3 cut(s)	40, 395, 400
CviKI_1	RGCY	3 cut(s)	40, 395, 400
CviQI	GTAC	3 cut(s)	69, 90, 311
DpnI	GATC	2 cut(s)	30, 56
DpnII	GATC	2 cut(s)	28, 54
Eco130I	CCWWGG	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	35
Eco91I	GGTNACC	1 cut(s)	442
EcoO109I	RGGNCCY	1 cut(s)	44
EcoO65I	GGTNACC	1 cut(s)	442
EcoRV	GATATC	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	2 cut(s)	137, 347
FaiI	YATR	5 cut(s)	7, 135, 235, 325, 345
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	2 cut(s)	133, 343
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	3 cut(s)	218, 224, 230
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	396
GluI	GCNGC	1 cut(s)	96
GsaI	CCCAGC	1 cut(s)	44
GsuI	CTGGAG	3 cut(s)	227, 317, 433
Hin1I	GRCGYC	1 cut(s)	349
Hin1II	CATG	2 cut(s)	137, 347
HinfI	GANTC	1 cut(s)	116
HphI	GGTGA	5 cut(s)	38, 125, 230, 320, 454
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	2 cut(s)	259, 349
HpyCH4V	TGCA	2 cut(s)	355, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 361
HpySE526I	ACGT	2 cut(s)	259, 349
Hsp92I	GRCGYC	1 cut(s)	349
Hsp92II	CATG	2 cut(s)	137, 347
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	28, 54
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	5 cut(s)	26, 257, 347, 416, 463
Lsp1109I	GCAGC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	2 cut(s)	259, 349
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	2 cut(s)	30, 56
MboI	GATC	2 cut(s)	28, 54
MluCI	AATT	2 cut(s)	128, 462
MnlI	CCTC	8 cut(s)	196, 202, 208, 251, 324, 341, 373, 457
MseI	TTAA	2 cut(s)	141, 147
MwoI	GCNNNNNNNGC	2 cut(s)	104, 361
NcoI	CCATGG	1 cut(s)	343
NdeII	GATC	2 cut(s)	28, 54
NlaIII	CATG	2 cut(s)	137, 347
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	44
PspEI	GGTNACC	1 cut(s)	442
PspFI	CCCAGC	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	44
PspPPI	RGGWCCY	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	357
RsaI	GTAC	3 cut(s)	70, 91, 312
RsaNI	GTAC	3 cut(s)	69, 90, 311
SaqAI	TTAA	2 cut(s)	141, 147
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	28, 54
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	2 cut(s)	70, 91
SetI	ASST	8 cut(s)	49, 243, 262, 316, 333, 352, 397, 449
SfcI	CTRYAG	1 cut(s)	353
SinI	GGWCC	1 cut(s)	44
Sse9I	AATT	2 cut(s)	128, 462
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	2 cut(s)	262, 352
TasI	AATT	2 cut(s)	128, 462
TatI	WGTACW	2 cut(s)	68, 89
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	141, 147
Tru9I	TTAA	2 cut(s)	141, 147
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 341
XspI	CTAG	1 cut(s)	396
ZraI	GACGTC	1 cut(s)	350
ZrmI	AGTACT	2 cut(s)	70, 91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.