Rorug02G0000900

ribosomal protein L4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000169
Physical Location & Seq
Forward (+)
142824 .. 147291
4468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0000900.1

Sequence Viewer

Length: 1878 bp
ATGGTATCTGTTGAGGGCAACGGTGGTTTGATTGTGGTGGCGGACGAGACTAACTCCGAAGACCCCGTCTATATCGATATGGAAGCCGAAGAGATTGGGATTGATGGTGCAACGAATGGACTTGAAGGTTTTACATCAGACAAAGCGGAAGCAAGTAATGTGGTATTTTCTAGAGAAGGACCACCCCTTGTAAGGAAAGAGTCCAGAATGTCCACTACCTGTAGTTGCAGCAGTACCAAGAAACTCAAATCTCGCGTTGCCATGATGGATTCCAACCCGGAGAAGAAGGAGAAACCTGGGCAAGAGAAAAAGCTCAGTAGACAAGATAGGATTGAATTGGGCCGCTTGTTTCAGAGCGCCGTGAGTTCCCATGATTGGGAACTTGCAGAGAGTCTGATCCTGTTAGCCGATCCACAAACTCTGAATGATGCTTTGTGCACTACTCTGGATTCAATTTGGTTTTTGACCACACAACAAGAGCTTTATGGGATAACGGGGTTGATTAAGAAAATCATTGTCAATGGTGCATATGACTTTACAAGAGCTGCCTTGAGGACTTCATTTCTTGCTTCATGTGTTTCTGCTTGTCAGAGCCGAACAATGAGTCTTGCAGATACAGTCACTCTAATGGCCCAAAGGTTGCATGAGCGTCTCCAGGAATGCAATGGAGATGAGGTCTTAAAGGCAGAAGCTGGTGCCAAGGTTCAAAAGTTTACCGAATGGGCTCTGAAATGTATAGGCTTCCATTCTCGTTGTCAGGGTAATAAAGATAGAGTTAATAACAGTTCAGGTGTTGAAATTCAACTCCAGTTATCTGCATTTAAGATATTCCTAGATATTGCTGGTAACCAGCTATCTGGGAAAGACTTCACGGAGGCCTTTGATGCTGCTTGCTTTCCCCTAACTCTCTTCTCTACTTCGTTCTATCCTGGCTGGGCATCTGGGATATCAGCAACTGCAATTCAAGGTCTGCTGGGTATGCTGGTGGAGGGGGGTGCAGACAATGTTAATCAGTGTTTCCTTGAAGCCTCTCGTTTTGGGAGTACAGAGCTTGTGCGCATCTTATTGCAGATTGCCCAACGGAACAGTTTGGATGTTGATGTTGACCTGGCGTTGGGTTTTGCGTCTCACTACTGCAAAATTGGTACTATGGAATGTCTTGTGGAAGAGGGTAATGCCATAGCCTTCTTGGGCCCTCTGATGAGAGCTGCAGAGAGGGGCTGTATGCAGGTTGTTGAGTGGTTTGTGAAAAGGGGTTGCCGAGACATGGAGCTGTGCCTTGCTCTGACAGCTGCAACATCTAGCAGCCAAGTTGATGTTGCTGCCTATCTCCTTCCTCATGTTCCTCATCATGTTCTTGCAGCACTAAGCATTGAAATTCTGAAGGCTGCTGGTGAACGAAGTGGTGGGTCTCTTGATGGTGTTGCATTTCTTCTCCATTCTGACTTCTTAGGAGACCCTGCAGCTACTTATGCTGTTGCTGACAATATTGCTCGGTCTGATGATGAGGGAGTAGCTCATGAGCTAAGGGCTTTTCTTAGAGAGCACTGGTCCGAGGAAGCCTTCTTGGAAGGAAGAAGACAAGAACAAGAACATTACCTGAACCTTGTGAGGATTTTAAAGTGGGGTGGATCTCCAATTTGCTTAAGAGATCTTCCATCCCCACTGAGGATAACAATTGCTTACCTGCCACTGTATAGGGAGTGTGTTAAGGCAGGTGGCTGTTTGTTGTCACAAAGGCTGAGAGGGCAGCTTATTGAAGCTGTGAGAGCGCTTGGTGGTGGGGTCTTAGAAGGGGTGAGCCAGTGCAAAGAGCTCTTGGCTTTTCTGGAGCACCATCTTCCTCCGTTTTTACTTGAACCGCCGAGCATTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L4

Protein Analysis

625

Amino Acids

68.22

Weight (kDa)

5.18

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1706
Acc16I TGCGCA 1 cut(s) 1058
Acc36I ACCTGC 3 cut(s) 1219, 1695, 1706
AccB1I GGYRCC 1 cut(s) 695
AccI GTMKAC 1 cut(s) 319
AccII CGCG 1 cut(s) 255
AciI CCGC 4 cut(s) 41, 146, 343, 1862
AclWI GGATC 3 cut(s) 391, 404, 1639
AcsI RAATTY 2 cut(s) 798, 1377
AcuI CTGAAG 1 cut(s) 1403
AfaI GTAC 3 cut(s) 235, 1045, 1147
AfeI AGCGCT 1 cut(s) 1773
AfiI CCNNNNNNNGG 6 cut(s) 192, 375, 376, 1114, 1267, 1668
AflII CTTAAG 1 cut(s) 1645
AjnI CCWGG 4 cut(s) 295, 654, 928, 1107
Alw21I GWGCWC 4 cut(s) 440, 1548, 1818, 1836
Alw26I GTCTC 6 cut(s) 41, 656, 1131, 1257, 1416, 1449
Alw44I GTGCAC 1 cut(s) 436
AlwI GGATC 3 cut(s) 391, 404, 1639
AlwNI CAGNNNCTG 2 cut(s) 692, 956
Aor51HI AGCGCT 1 cut(s) 1773
AoxI GGCC 4 cut(s) 340, 630, 876, 1192
ApaI GGGCCC 1 cut(s) 1196
ApaLI GTGCAC 1 cut(s) 436
ApoI RAATTY 2 cut(s) 798, 1377
ArsI GACNNNNNNTTYG 4 cut(s) 51, 83, 589, 621
Asp700I GAANNNNTTC 1 cut(s) 866
AspLEI GCGC 3 cut(s) 359, 1059, 1774
AspS9I GGNCC 6 cut(s) 179, 340, 631, 1192, 1193, 1551
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 2 cut(s) 1406, 1810
AvaII GGWCC 2 cut(s) 179, 1551
BaeGI GKGCMC 2 cut(s) 440, 1196
BanI GGYRCC 1 cut(s) 695
BanII GRGCYC 3 cut(s) 727, 1196, 1818
BbsI GAAGAC 2 cut(s) 66, 1585
Bbv12I GWGCWC 4 cut(s) 440, 1548, 1818, 1836
BccI CCATC 5 cut(s) 98, 259, 1412, 1666, 1845
BceAI ACGGC 1 cut(s) 344
BciT130I CCWGG 4 cut(s) 297, 656, 930, 1109
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 6 cut(s) 41, 656, 1131, 1257, 1416, 1449
BfaI CTAG 3 cut(s) 171, 833, 1302
BfmI CTRYAG 3 cut(s) 220, 1209, 1461
BfoI RGCGCY 2 cut(s) 360, 1775
BfrI CTTAAG 1 cut(s) 1645
BfuAI ACCTGC 3 cut(s) 1219, 1695, 1706
BglII AGATCT 1 cut(s) 1651
Bme1390I CCNGG 5 cut(s) 278, 297, 656, 930, 1109
Bme18I GGWCC 2 cut(s) 179, 1551
BmgT120I GGNCC 6 cut(s) 179, 340, 631, 1192, 1193, 1551
BmiI GGNNCC 2 cut(s) 697, 1194
BmrFI CCNGG 5 cut(s) 278, 297, 656, 930, 1109
BmsI GCATC 4 cut(s) 418, 874, 947, 1068
BpiI GAAGAC 2 cut(s) 66, 1585
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpmI CTGGAG 3 cut(s) 638, 791, 1850
Bpu10I CCTNAGC 1 cut(s) 1526
BpuEI CTTGAG 1 cut(s) 571
BpuMI CCSGG 1 cut(s) 278
Bsa29I ATCGAT 1 cut(s) 75
BsaI GGTCTC 2 cut(s) 1416, 1449
BsaJI CCNNGG 3 cut(s) 296, 699, 1554
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bsc4I CCNNNNNNNGG 6 cut(s) 192, 375, 376, 1114, 1267, 1668
Bse1I ACTGG 3 cut(s) 808, 1553, 1804
Bse3DI GCAATG 1 cut(s) 670
BseBI CCWGG 4 cut(s) 297, 656, 930, 1109
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 3 cut(s) 296, 699, 1554
BseGI GGATG 2 cut(s) 1099, 1658
BseLI CCNNNNNNNGG 6 cut(s) 192, 375, 376, 1114, 1267, 1668
BseMI GCAATG 1 cut(s) 670
BseMII CTCAG 3 cut(s) 328, 1658, 1733
BseNI ACTGG 3 cut(s) 808, 1553, 1804
BseSI GKGCMC 2 cut(s) 440, 1196
BseYI CCCAGC 2 cut(s) 933, 973
BsgI GTGCAG 1 cut(s) 1017
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 4 cut(s) 342, 632, 878, 1194
BshNI GGYRCC 1 cut(s) 695
BshVI ATCGAT 1 cut(s) 75
BsiHKAI GWGCWC 4 cut(s) 440, 1548, 1818, 1836
BsiSI CCGG 1 cut(s) 278
BslI CCNNNNNNNGG 6 cut(s) 192, 375, 376, 1114, 1267, 1668
BsmAI GTCTC 6 cut(s) 41, 656, 1131, 1257, 1416, 1449
BsmBI CGTCTC 2 cut(s) 656, 1131
BsmI GAATGC 1 cut(s) 665
BsnI GGCC 4 cut(s) 342, 632, 878, 1194
Bso31I GGTCTC 2 cut(s) 1416, 1449
Bsp120I GGGCCC 1 cut(s) 1192
Bsp1286I GDGCHC 6 cut(s) 440, 727, 1196, 1548, 1818, 1836
Bsp143I GATC 4 cut(s) 396, 409, 1631, 1651
BspACI CCGC 4 cut(s) 41, 146, 343, 1862
BspANI GGCC 4 cut(s) 342, 632, 878, 1194
BspCNI CTCAG 3 cut(s) 327, 1659, 1734
BspDI ATCGAT 1 cut(s) 75
BspFNI CGCG 1 cut(s) 255
BspHI TCATGA 1 cut(s) 1519
BspLI GGNNCC 2 cut(s) 697, 1194
BspMAI CTGCAG 2 cut(s) 1213, 1465
BspMI ACCTGC 3 cut(s) 1219, 1695, 1706
BspPI GGATC 3 cut(s) 391, 404, 1639
BspT107I GGYRCC 1 cut(s) 695
BspTI CTTAAG 1 cut(s) 1645
BspTNI GGTCTC 2 cut(s) 1416, 1449
BsrDI GCAATG 1 cut(s) 670
BsrI ACTGG 3 cut(s) 808, 1553, 1804
BssECI CCNNGG 3 cut(s) 296, 699, 1554
BssMI GATC 4 cut(s) 396, 409, 1631, 1651
BssT1I CCWWGG 1 cut(s) 699
Bst2UI CCWGG 4 cut(s) 297, 656, 930, 1109
Bst4CI ACNGT 5 cut(s) 23, 619, 785, 1088, 1695
Bst6I CTCTTC 3 cut(s) 84, 914, 1161
BstAFI CTTAAG 1 cut(s) 1645
BstC8I GCNNGC 1 cut(s) 892
BstDEI CTNAG 8 cut(s) 314, 1367, 1450, 1526, 1538, 1667, 1742, 1789
BstEII GGTNACC 1 cut(s) 845
BstF5I GGATG 2 cut(s) 1099, 1658
BstFNI CGCG 1 cut(s) 255
BstH2I RGCGCY 2 cut(s) 360, 1775
BstHHI GCGC 3 cut(s) 359, 1059, 1774
BstKTI GATC 4 cut(s) 399, 412, 1634, 1654
BstMAI GTCTC 6 cut(s) 41, 656, 1131, 1257, 1416, 1449
BstMBI GATC 4 cut(s) 396, 409, 1631, 1651
BstMWI GCNNNNNNNGC 6 cut(s) 884, 979, 1289, 1472, 1747, 1769
BstNI CCWGG 4 cut(s) 297, 656, 930, 1109
BstPI GGTNACC 1 cut(s) 845
BstSCI CCNGG 5 cut(s) 276, 295, 654, 928, 1107
BstSFI CTRYAG 3 cut(s) 220, 1209, 1461
BstSLI GKGCMC 2 cut(s) 440, 1196
BstUI CGCG 1 cut(s) 255
BstV2I GAAGAC 2 cut(s) 66, 1585
BstX2I RGATCY 2 cut(s) 1631, 1651
BstXI CCANNNNNNTGG 1 cut(s) 857
BstYI RGATCY 2 cut(s) 1631, 1651
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 4 cut(s) 342, 632, 878, 1194
BsuTUI ATCGAT 1 cut(s) 75
BtsCI GGATG 2 cut(s) 1099, 1658
BtsIMutI CAGTG 5 cut(s) 1019, 1546, 1664, 1691, 1811
BveI ACCTGC 3 cut(s) 1219, 1695, 1706
Cac8I GCNNGC 1 cut(s) 892
CaiI CAGNNNCTG 2 cut(s) 692, 956
CciI TCATGA 1 cut(s) 1519
CfoI GCGC 3 cut(s) 359, 1059, 1774
Cfr13I GGNCC 6 cut(s) 179, 340, 631, 1192, 1193, 1551
ClaI ATCGAT 1 cut(s) 75
CseI GACGC 2 cut(s) 638, 1113
Csp6I GTAC 3 cut(s) 234, 1044, 1146
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 8 cut(s) 262, 371, 573, 644, 1267, 1340, 1352, 1520
CviQI GTAC 3 cut(s) 234, 1044, 1146
DdeI CTNAG 8 cut(s) 314, 1367, 1450, 1526, 1538, 1667, 1742, 1789
DpnI GATC 4 cut(s) 398, 411, 1633, 1653
DpnII GATC 4 cut(s) 396, 409, 1631, 1651
DraI TTTAAA 1 cut(s) 1620
Eam1104I CTCTTC 3 cut(s) 84, 914, 1161
EarI CTCTTC 3 cut(s) 84, 914, 1161
EciI GGCGGA 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 1816
Eco130I CCWWGG 1 cut(s) 699
Eco147I AGGCCT 1 cut(s) 878
Eco24I GRGCYC 3 cut(s) 727, 1196, 1818
Eco31I GGTCTC 2 cut(s) 1416, 1449
Eco32I GATATC 1 cut(s) 948
Eco47I GGWCC 2 cut(s) 179, 1551
Eco47III AGCGCT 1 cut(s) 1773
Eco53kI GAGCTC 1 cut(s) 1816
Eco57I CTGAAG 1 cut(s) 1403
Eco91I GGTNACC 1 cut(s) 845
EcoICRI GAGCTC 1 cut(s) 1816
EcoO109I RGGNCCY 1 cut(s) 1193
EcoO65I GGTNACC 1 cut(s) 845
EcoRII CCWGG 4 cut(s) 295, 654, 928, 1107
EcoRV GATATC 1 cut(s) 948
EcoT14I CCWWGG 1 cut(s) 699
EcoT38I GRGCYC 3 cut(s) 727, 1196, 1818
ErhI CCWWGG 1 cut(s) 699
Esp3I CGTCTC 2 cut(s) 656, 1131
FaeI CATG 8 cut(s) 265, 374, 576, 647, 1270, 1343, 1355, 1523
FatI CATG 8 cut(s) 261, 370, 572, 643, 1266, 1339, 1351, 1519
FauNDI CATATG 1 cut(s) 529
FblI GTMKAC 1 cut(s) 319
FokI GGATG 2 cut(s) 1106, 1645
FriOI GRGCYC 3 cut(s) 727, 1196, 1818
FspAI RTGCGCAY 1 cut(s) 1058
FspBI CTAG 3 cut(s) 171, 833, 1302
FspI TGCGCA 1 cut(s) 1058
GlaI GCGC 3 cut(s) 358, 1058, 1773
GsaI CCCAGC 2 cut(s) 937, 977
GsuI CTGGAG 3 cut(s) 638, 791, 1850
HaeII RGCGCY 2 cut(s) 360, 1775
HaeIII GGCC 4 cut(s) 342, 632, 878, 1194
HapII CCGG 1 cut(s) 278
HgaI GACGC 2 cut(s) 638, 1113
HhaI GCGC 3 cut(s) 359, 1059, 1774
Hin1II CATG 8 cut(s) 265, 374, 576, 647, 1270, 1343, 1355, 1523
Hin6I GCGC 3 cut(s) 357, 1057, 1772
HinP1I GCGC 3 cut(s) 357, 1057, 1772
HincII GTYRAC 1 cut(s) 1105
HindII GTYRAC 1 cut(s) 1105
HinfI GANTC 5 cut(s) 200, 269, 391, 449, 604
HpaII CCGG 1 cut(s) 278
HphI GGTGA 2 cut(s) 1406, 1810
Hpy166II GTNNAC 6 cut(s) 213, 320, 438, 714, 1105, 1397
Hpy188III TCNNGA 6 cut(s) 171, 204, 446, 1415, 1520, 1829
Hpy8I GTNNAC 6 cut(s) 213, 320, 438, 714, 1105, 1397
HpyAV CCTTC 9 cut(s) 119, 170, 280, 1195, 1343, 1378, 1565, 1573, 1787
HpyCH4III ACNGT 5 cut(s) 23, 619, 785, 1088, 1695
HpyF10VI GCNNNNNNNGC 6 cut(s) 884, 979, 1289, 1472, 1747, 1769
HpyF3I CTNAG 8 cut(s) 314, 1367, 1450, 1526, 1538, 1667, 1742, 1789
Hsp92II CATG 8 cut(s) 265, 374, 576, 647, 1270, 1343, 1355, 1523
HspAI GCGC 3 cut(s) 357, 1057, 1772
Kzo9I GATC 4 cut(s) 396, 409, 1631, 1651
LmnI GCTCC 2 cut(s) 1270, 1831
LweI GCATC 4 cut(s) 418, 874, 947, 1068
MaeI CTAG 3 cut(s) 171, 833, 1302
MaeIII GTNAC 3 cut(s) 619, 845, 1731
MalI GATC 4 cut(s) 398, 411, 1633, 1653
MboI GATC 4 cut(s) 396, 409, 1631, 1651
MfeI CAATTG 1 cut(s) 1677
MflI RGATCY 2 cut(s) 1631, 1651
MhlI GDGCHC 6 cut(s) 440, 727, 1196, 1548, 1818, 1836
MluCI AATT 8 cut(s) 335, 453, 798, 960, 1140, 1377, 1638, 1677
MlyI GAGTC 3 cut(s) 209, 400, 613
MmeI TCCRAC 1 cut(s) 297
MroXI GAANNNNTTC 1 cut(s) 866
MseI TTAA 8 cut(s) 504, 680, 777, 822, 1008, 1619, 1646, 1710
MslI CAYNNNNRTG 1 cut(s) 626
MspA1I CMGCKG 1 cut(s) 1292
MspCI CTTAAG 1 cut(s) 1645
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 5 cut(s) 278, 297, 656, 930, 1109
MunI CAATTG 1 cut(s) 1677
Mva1269I GAATGC 1 cut(s) 665
MvaI CCWGG 4 cut(s) 297, 656, 930, 1109
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 6 cut(s) 884, 979, 1289, 1472, 1747, 1769
NciI CCSGG 1 cut(s) 278
NdeI CATATG 1 cut(s) 529
NdeII GATC 4 cut(s) 396, 409, 1631, 1651
NlaIII CATG 8 cut(s) 265, 374, 576, 647, 1270, 1343, 1355, 1523
NlaIV GGNNCC 2 cut(s) 697, 1194
NmeAIII GCCGAG 1 cut(s) 1286
NmuCI GTSAC 2 cut(s) 619, 1731
NsbI TGCGCA 1 cut(s) 1058
PagI TCATGA 1 cut(s) 1519
PaqCI CACCTGC 1 cut(s) 1706
PceI AGGCCT 1 cut(s) 878
PctI GAATGC 1 cut(s) 665
PdmI GAANNNNTTC 1 cut(s) 866
PfeI GAWTC 2 cut(s) 269, 449
PflFI GACNNNGTC 1 cut(s) 65
PfoI TCCNGGA 1 cut(s) 654
PleI GAGTC 3 cut(s) 208, 399, 612
PpsI GAGTC 3 cut(s) 208, 399, 612
Psp124BI GAGCTC 1 cut(s) 1818
Psp6I CCWGG 4 cut(s) 295, 654, 928, 1107
PspEI GGTNACC 1 cut(s) 845
PspFI CCCAGC 2 cut(s) 933, 973
PspGI CCWGG 4 cut(s) 295, 654, 928, 1107
PspN4I GGNNCC 2 cut(s) 697, 1194
PspOMI GGGCCC 1 cut(s) 1192
PspPI GGNCC 6 cut(s) 179, 340, 631, 1192, 1193, 1551
PstI CTGCAG 2 cut(s) 1213, 1465
PstNI CAGNNNCTG 2 cut(s) 692, 956
PsuI RGATCY 2 cut(s) 1631, 1651
PsyI GACNNNGTC 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 1292
RsaI GTAC 3 cut(s) 235, 1045, 1147
RsaNI GTAC 3 cut(s) 234, 1044, 1146
RseI CAYNNNNRTG 1 cut(s) 626
SacI GAGCTC 1 cut(s) 1818
SaqAI TTAA 8 cut(s) 504, 680, 777, 822, 1008, 1619, 1646, 1710
Sau3AI GATC 4 cut(s) 396, 409, 1631, 1651
Sau96I GGNCC 6 cut(s) 179, 340, 631, 1192, 1193, 1551
SchI GAGTC 3 cut(s) 209, 400, 613
ScrFI CCNGG 5 cut(s) 278, 297, 656, 930, 1109
SduI GDGCHC 6 cut(s) 440, 727, 1196, 1548, 1818, 1836
SfaNI GCATC 4 cut(s) 418, 874, 947, 1068
SfcI CTRYAG 3 cut(s) 220, 1209, 1461
SinI GGWCC 2 cut(s) 179, 1551
SmiMI CAYNNNNRTG 1 cut(s) 626
SmlI CTYRAG 2 cut(s) 550, 1645
SmoI CTYRAG 2 cut(s) 550, 1645
Sse9I AATT 8 cut(s) 335, 453, 798, 960, 1140, 1377, 1638, 1677
SseBI AGGCCT 1 cut(s) 878
SsiI CCGC 4 cut(s) 41, 146, 343, 1862
SspI AATATT 1 cut(s) 1489
SspMI CTAG 3 cut(s) 171, 833, 1302
SstI GAGCTC 1 cut(s) 1818
StuI AGGCCT 1 cut(s) 878
StyD4I CCNGG 5 cut(s) 276, 295, 654, 928, 1107
StyI CCWWGG 1 cut(s) 699
TaaI ACNGT 5 cut(s) 23, 619, 785, 1088, 1695
TaqI TCGA 1 cut(s) 75
TaqII GACCGA 1 cut(s) 1485
TasI AATT 8 cut(s) 335, 453, 798, 960, 1140, 1377, 1638, 1677
TatI WGTACW 1 cut(s) 1043
TauI GCSGC 1 cut(s) 345
TfiI GAWTC 2 cut(s) 269, 449
Tru1I TTAA 8 cut(s) 504, 680, 777, 822, 1008, 1619, 1646, 1710
Tru9I TTAA 8 cut(s) 504, 680, 777, 822, 1008, 1619, 1646, 1710
TscAI CASTG 5 cut(s) 1019, 1553, 1671, 1698, 1811
TseFI GTSAC 2 cut(s) 619, 1731
Tsp45I GTSAC 2 cut(s) 619, 1731
TspDTI ATGAA 2 cut(s) 549, 561
TspGWI ACGGA 3 cut(s) 887, 1096, 1836
TspRI CASTG 5 cut(s) 1019, 1553, 1671, 1698, 1811
Tth111I GACNNNGTC 1 cut(s) 65
Vha464I CTTAAG 1 cut(s) 1645
VneI GTGCAC 1 cut(s) 436
VpaK11BI GGWCC 2 cut(s) 179, 1551
XapI RAATTY 2 cut(s) 798, 1377
XbaI TCTAGA 1 cut(s) 170
XcmI CCANNNNNNNNNTGG 2 cut(s) 662, 1186
XmiI GTMKAC 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 866
XspI CTAG 3 cut(s) 171, 833, 1302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.