Rmu_sc0004010.1_g000012

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004010.1
OG0000169
Physical Location & Seq
Reverse (-)
37192 .. 38291
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004010.1_g000012.1.cds

Sequence Viewer

Length: 909 bp
atggcctttattgacgttgtcactgctagcttccctgcctcccttgcgtttgccaagggaggtagtgctcttgatctggggagaattgccttcaaagcccacttccttcggacttggatggtggataaaggttttagggttcaagtgcgggctagaaatcttttcttgttctcgtttgaatctgcttgtgaacgcatcaaggttttgcagggtggggtttggtgctttgaacgagcttttgtttgtcttgaagagtatgacggtgtcaaatctctccaagaagtccctctcaaacatgtttgtttttgggacgttagggttcctgggatccctcccttatatgaagaacagaaaaacttcacccttattggcaatctgttgggtgattttctggactacgacaaggagttcaagaagggcttgatcgctatcgtatttgcccatgacgttactaaaccagtattgcttgagcgcgcagtctttctagatgttggtgttaaaccaatcttgcagttccagtttaagcacctgaaatggaggtcccctcaatgtggtttgatcacacatgctagagccaagtgtgaggagcctagcattggaatctcagcgtccaggcccctcgacttcagaaggctccttctccttcttagtacagaacagtttagaggtagaaaggctacagttgaattttccgtagagcaagttgtggagcatgtacagaatgtggtactggagcctacttcagggactggcattagcttgcatgaacctgcaaaagcagtgcaacctgtgcagatggaggctctgccctccaagaaaagaaagcgaagtagtggatgtagcccctccccaaggaatttaaaactatcttgggcggtaagcttcctgctttggagactgaagctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

302

Amino Acids

34.16

Weight (kDa)

9.47

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 778
AccII CGCG 1 cut(s) 474
AciI CCGC 2 cut(s) 148, 875
AclWI GGATC 2 cut(s) 322, 335
AcsI RAATTY 2 cut(s) 686, 856
AcuI CTGAAG 2 cut(s) 610, 726
AfaI GTAC 3 cut(s) 652, 717, 729
AfiI CCNNNNNNNGG 4 cut(s) 551, 596, 743, 852
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 7 cut(s) 94, 143, 179, 230, 251, 412, 686
AjnI CCWGG 2 cut(s) 322, 611
AluBI AGCT 5 cut(s) 30, 236, 759, 882, 904
AluI AGCT 5 cut(s) 30, 236, 759, 882, 904
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 889
AlwI GGATC 2 cut(s) 322, 335
AlwNI CAGNNNCTG 1 cut(s) 749
AoxI GGCC 2 cut(s) 3, 614
ApoI RAATTY 2 cut(s) 686, 856
Asp700I GAANNNNTTC 1 cut(s) 356
AspLEI GCGC 2 cut(s) 474, 476
AspS9I GGNCC 2 cut(s) 540, 615
AsuHPI GGTGA 2 cut(s) 352, 395
AsuNHI GCTAGC 1 cut(s) 26
AvaII GGWCC 1 cut(s) 540
BamHI GGATCC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 70
BccI CCATC 2 cut(s) 112, 790
BciT130I CCWGG 2 cut(s) 324, 613
BclI TGATCA 1 cut(s) 558
BcoDI GTCTC 1 cut(s) 889
BfaI CTAG 6 cut(s) 27, 153, 485, 570, 591, 907
BfmI CTRYAG 1 cut(s) 678
BfuAI ACCTGC 1 cut(s) 778
Bme1390I CCNGG 2 cut(s) 324, 613
Bme18I GGWCC 1 cut(s) 540
BmgT120I GGNCC 2 cut(s) 540, 615
BmiI GGNNCC 7 cut(s) 321, 329, 542, 588, 617, 635, 735
BmrFI CCNGG 2 cut(s) 324, 613
BmsI GCATC 1 cut(s) 204
BmtI GCTAGC 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 529, 561
BpmI CTGGAG 1 cut(s) 752
BpuEI CTTGAG 1 cut(s) 488
BsaBI GATNNNNATC 1 cut(s) 428
BsaJI CCNNGG 3 cut(s) 54, 323, 851
Bsc4I CCNNNNNNNGG 4 cut(s) 551, 596, 743, 852
Bse1I ACTGG 4 cut(s) 458, 517, 735, 754
Bse8I GATNNNNATC 1 cut(s) 428
BseBI CCWGG 2 cut(s) 324, 613
BseDI CCNNGG 3 cut(s) 54, 323, 851
BseGI GGATG 2 cut(s) 123, 842
BseJI GATNNNNATC 1 cut(s) 428
BseLI CCNNNNNNNGG 4 cut(s) 551, 596, 743, 852
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 4 cut(s) 458, 517, 735, 754
BsePI GCGCGC 1 cut(s) 472
BseRI GAGGAG 1 cut(s) 599
BsgI GTGCAG 1 cut(s) 812
Bsh1236I CGCG 1 cut(s) 474
BshFI GGCC 2 cut(s) 5, 616
BsiHKAI GWGCWC 1 cut(s) 70
BslFI GGGAC 4 cut(s) 269, 323, 526, 760
BslI CCNNNNNNNGG 4 cut(s) 551, 596, 743, 852
BsmAI GTCTC 1 cut(s) 889
BsmFI GGGAC 4 cut(s) 269, 323, 526, 760
BsnI GGCC 2 cut(s) 5, 616
Bsp1286I GDGCHC 1 cut(s) 70
Bsp1407I TGTACA 1 cut(s) 715
Bsp143I GATC 4 cut(s) 73, 327, 423, 558
BspACI CCGC 2 cut(s) 148, 875
BspANI GGCC 2 cut(s) 5, 616
BspCNI CTCAG 1 cut(s) 617
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 7 cut(s) 321, 329, 542, 588, 617, 635, 735
BspMI ACCTGC 1 cut(s) 778
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 2 cut(s) 322, 335
BsrGI TGTACA 1 cut(s) 715
BsrI ACTGG 4 cut(s) 458, 517, 735, 754
BssECI CCNNGG 3 cut(s) 54, 323, 851
BssHII GCGCGC 1 cut(s) 472
BssMI GATC 4 cut(s) 73, 327, 423, 558
BssT1I CCWWGG 2 cut(s) 54, 851
Bst2UI CCWGG 2 cut(s) 324, 613
Bst4CI ACNGT 3 cut(s) 263, 660, 682
Bst6I CTCTTC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 790
BstAUI TGTACA 1 cut(s) 715
BstC8I GCNNGC 4 cut(s) 28, 150, 474, 761
BstDEI CTNAG 2 cut(s) 604, 647
BstENI CCTNNNNNAGG 2 cut(s) 741, 850
BstF5I GGATG 2 cut(s) 123, 842
BstFNI CGCG 1 cut(s) 474
BstHHI GCGC 2 cut(s) 474, 476
BstKTI GATC 4 cut(s) 76, 330, 426, 561
BstMAI GTCTC 1 cut(s) 889
BstMBI GATC 4 cut(s) 73, 327, 423, 558
BstMWI GCNNNNNNNGC 3 cut(s) 44, 95, 790
BstNI CCWGG 2 cut(s) 324, 613
BstNSI RCATGY 3 cut(s) 299, 569, 716
BstSCI CCNGG 2 cut(s) 322, 611
BstSFI CTRYAG 1 cut(s) 678
BstUI CGCG 1 cut(s) 474
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BsuRI GGCC 2 cut(s) 5, 616
BtsCI GGATG 2 cut(s) 123, 842
BtsI GCAGTG 2 cut(s) 21, 786
BtsIMutI CAGTG 2 cut(s) 21, 786
BveI ACCTGC 1 cut(s) 778
Cac8I GCNNGC 4 cut(s) 28, 150, 474, 761
CaiI CAGNNNCTG 1 cut(s) 749
CfoI GCGC 2 cut(s) 474, 476
Cfr13I GGNCC 2 cut(s) 540, 615
CseI GACGC 1 cut(s) 597
Csp6I GTAC 3 cut(s) 651, 716, 728
CviAII CATG 5 cut(s) 296, 443, 566, 713, 764
CviQI GTAC 3 cut(s) 651, 716, 728
DdeI CTNAG 2 cut(s) 604, 647
DpnI GATC 4 cut(s) 75, 329, 425, 560
DpnII GATC 4 cut(s) 73, 327, 423, 558
DraI TTTAAA 1 cut(s) 861
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco130I CCWWGG 2 cut(s) 54, 851
Eco47I GGWCC 1 cut(s) 540
Eco57I CTGAAG 2 cut(s) 610, 726
EcoNI CCTNNNNNAGG 2 cut(s) 741, 850
EcoO109I RGGNCCY 2 cut(s) 540, 615
EcoRII CCWGG 2 cut(s) 322, 611
EcoT14I CCWWGG 2 cut(s) 54, 851
ErhI CCWWGG 2 cut(s) 54, 851
FaeI CATG 5 cut(s) 299, 446, 569, 716, 767
FaiI YATR 8 cut(s) 258, 297, 340, 342, 444, 567, 714, 765
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 4 cut(s) 269, 323, 526, 760
FatI CATG 5 cut(s) 295, 442, 565, 712, 763
FauI CCCGC 1 cut(s) 141
FbaI TGATCA 1 cut(s) 558
FokI GGATG 2 cut(s) 130, 849
FspBI CTAG 6 cut(s) 27, 153, 485, 570, 591, 907
GlaI GCGC 2 cut(s) 473, 475
GsuI CTGGAG 1 cut(s) 752
HaeIII GGCC 2 cut(s) 5, 616
HgaI GACGC 1 cut(s) 597
HhaI GCGC 2 cut(s) 474, 476
Hin1II CATG 5 cut(s) 299, 446, 569, 716, 767
Hin6I GCGC 2 cut(s) 472, 474
HinP1I GCGC 2 cut(s) 472, 474
HindIII AAGCTT 1 cut(s) 880
HinfI GANTC 2 cut(s) 179, 600
HphI GGTGA 2 cut(s) 352, 395
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 111, 629
Hpy188III TCNNGA 5 cut(s) 71, 248, 392, 412, 485
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 6 cut(s) 100, 116, 409, 624, 647, 653
HpyCH4III ACNGT 3 cut(s) 263, 660, 682
HpyCH4IV ACGT 3 cut(s) 15, 312, 447
HpyCH4V TGCA 6 cut(s) 208, 511, 763, 773, 784, 793
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 95, 790
HpyF3I CTNAG 2 cut(s) 604, 647
HpySE526I ACGT 3 cut(s) 15, 312, 447
Hsp92II CATG 5 cut(s) 299, 446, 569, 716, 767
HspAI GCGC 2 cut(s) 472, 474
Ksp22I TGATCA 1 cut(s) 558
Kzo9I GATC 4 cut(s) 73, 327, 423, 558
LmnI GCTCC 4 cut(s) 586, 639, 709, 733
LweI GCATC 1 cut(s) 204
MaeI CTAG 6 cut(s) 27, 153, 485, 570, 591, 907
MaeII ACGT 3 cut(s) 15, 312, 447
MaeIII GTNAC 2 cut(s) 19, 448
MalI GATC 4 cut(s) 75, 329, 425, 560
MboI GATC 4 cut(s) 73, 327, 423, 558
MboII GAAGA 2 cut(s) 263, 356
MflI RGATCY 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 3 cut(s) 84, 686, 856
MroXI GAANNNNTTC 1 cut(s) 356
MseI TTAA 3 cut(s) 498, 522, 860
MspR9I CCNGG 2 cut(s) 324, 613
MvaI CCWGG 2 cut(s) 324, 613
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 3 cut(s) 44, 95, 790
NdeII GATC 4 cut(s) 73, 327, 423, 558
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 5 cut(s) 299, 446, 569, 716, 767
NlaIV GGNNCC 7 cut(s) 321, 329, 542, 588, 617, 635, 735
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 3 cut(s) 299, 569, 716
PauI GCGCGC 1 cut(s) 472
PciI ACATGT 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 356
PfeI GAWTC 2 cut(s) 179, 600
PflFI GACNNNGTC 2 cut(s) 17, 263
PpuMI RGGWCCY 1 cut(s) 540
PscI ACATGT 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 540
Psp6I CCWGG 2 cut(s) 322, 611
PspGI CCWGG 2 cut(s) 322, 611
PspN4I GGNNCC 7 cut(s) 321, 329, 542, 588, 617, 635, 735
PspPI GGNCC 2 cut(s) 540, 615
PspPPI RGGWCCY 1 cut(s) 540
PstNI CAGNNNCTG 1 cut(s) 749
PsuI RGATCY 1 cut(s) 327
PsyI GACNNNGTC 2 cut(s) 17, 263
PteI GCGCGC 1 cut(s) 472
RsaI GTAC 3 cut(s) 652, 717, 729
RsaNI GTAC 3 cut(s) 651, 716, 728
SaqAI TTAA 3 cut(s) 498, 522, 860
Sau3AI GATC 4 cut(s) 73, 327, 423, 558
Sau96I GGNCC 2 cut(s) 540, 615
ScrFI CCNGG 2 cut(s) 324, 613
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 1 cut(s) 204
SfcI CTRYAG 1 cut(s) 678
SinI GGWCC 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 3 cut(s) 84, 686, 856
SsiI CCGC 2 cut(s) 148, 875
SspMI CTAG 6 cut(s) 27, 153, 485, 570, 591, 907
StyD4I CCNGG 2 cut(s) 322, 611
StyI CCWWGG 2 cut(s) 54, 851
TaaI ACNGT 3 cut(s) 263, 660, 682
TaiI ACGT 3 cut(s) 18, 315, 450
TaqI TCGA 1 cut(s) 621
TasI AATT 3 cut(s) 84, 686, 856
TatI WGTACW 2 cut(s) 650, 715
TfiI GAWTC 2 cut(s) 179, 600
Tru1I TTAA 3 cut(s) 498, 522, 860
Tru9I TTAA 3 cut(s) 498, 522, 860
TscAI CASTG 2 cut(s) 28, 786
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 357, 780
TspGWI ACGGA 1 cut(s) 682
TspRI CASTG 2 cut(s) 28, 786
Tth111I GACNNNGTC 2 cut(s) 17, 263
VpaK11BI GGWCC 1 cut(s) 540
XagI CCTNNNNNAGG 2 cut(s) 741, 850
XapI RAATTY 2 cut(s) 686, 856
XbaI TCTAGA 1 cut(s) 484
XceI RCATGY 3 cut(s) 299, 569, 716
XmnI GAANNNNTTC 1 cut(s) 356
XspI CTAG 6 cut(s) 27, 153, 485, 570, 591, 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.