Rmu_sc0004353.1_g000004

Ribosomal protein L14p/L23e

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004353.1
OG0000169
Physical Location & Seq
Reverse (-)
9070 .. 10414
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004353.1_g000004.1.cds

Sequence Viewer

Length: 612 bp
atggaagccatggccttctggaatcgtgttgaatcaagctggcgatcttcgacgcggtcagtgagcttatcgaaggctttgctctgttgctgcaagtccttggagtcctcgatcctatcaattccttcttcgggcgacggcaatgtcgccgatgtcgttggtggcgtcgccattgctatttgcgacggcgtaaataccgtcgccaaagttcatgcgacggccaaattgccgtcgccaatagcaatggcgacgccaccagcgacatcggcgacattgccgtcgccgttggtcattggcgactacaatttggctttcggcgacggccttgcgccgtggccaattgaatttttttttttaacatggatggtggagaaggccttccgcatccaagaaaaggcggacaacaagtttctgttctctttcgacctagccagagatcggaacaaggtacttcagggtggtgtttggtgttacgtccgggctccggtctgtctggaggagtatgatggggtcacccccatcgccgatgtccctctgaagcgtcttacctatccgggtgttgctgcttcccaggagattggccctaaagctaagagcaaagggaaactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

203

Amino Acids

21.82

Weight (kDa)

8.19

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 143, 277
AccII CGCG 1 cut(s) 55
AciI CCGC 3 cut(s) 55, 382, 398
AclWI GGATC 1 cut(s) 106
AcoI YGGCCR 2 cut(s) 219, 335
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 2 cut(s) 437, 557
AcyI GRCGYC 2 cut(s) 165, 251
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 4 cut(s) 131, 394, 438, 484
AgsI TTSAA 2 cut(s) 32, 344
AjnI CCWGG 1 cut(s) 570
AluBI AGCT 3 cut(s) 39, 66, 590
AluI AGCT 3 cut(s) 39, 66, 590
AlwI GGATC 1 cut(s) 106
AoxI GGCC 6 cut(s) 12, 219, 322, 335, 375, 580
ApeKI GCWGC 2 cut(s) 90, 563
ApoI RAATTY 1 cut(s) 344
Asp700I GAANNNNTTC 1 cut(s) 377
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 581
AsuC2I CCSGG 2 cut(s) 479, 555
AsuHPI GGTGA 1 cut(s) 505
BalI TGGCCA 1 cut(s) 337
BanII GRGCYC 1 cut(s) 484
BbvI GCAGC 2 cut(s) 77, 550
BccI CCATC 3 cut(s) 358, 500, 527
BceAI ACGGC 8 cut(s) 154, 202, 214, 234, 262, 268, 316, 337
BcgI CGANNNNNNTGC 4 cut(s) 61, 95, 308, 342
BciT130I CCWGG 1 cut(s) 572
BcnI CCSGG 2 cut(s) 479, 555
BfaI CTAG 2 cut(s) 428, 610
BisI GCNGC 2 cut(s) 91, 564
BlsI GCNGC 2 cut(s) 92, 565
Bme1390I CCNGG 3 cut(s) 479, 555, 572
BmgT120I GGNCC 1 cut(s) 581
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 3 cut(s) 479, 555, 572
BmsI GCATC 1 cut(s) 393
BpmI CTGGAG 1 cut(s) 515
BpuMI CCSGG 2 cut(s) 479, 555
BsaHI GRCGYC 2 cut(s) 165, 251
BsaJI CCNNGG 4 cut(s) 9, 99, 332, 570
BsaWI WCCGGW 1 cut(s) 484
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 394, 438, 484
Bse3DI GCAATG 4 cut(s) 148, 171, 249, 272
BseBI CCWGG 1 cut(s) 572
BseDI CCNNGG 4 cut(s) 9, 99, 332, 570
BseGI GGATG 2 cut(s) 369, 384
BseLI CCNNNNNNNGG 4 cut(s) 131, 394, 438, 484
BseMI GCAATG 4 cut(s) 148, 171, 249, 272
BseRI GAGGAG 1 cut(s) 512
BseXI GCAGC 2 cut(s) 77, 550
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 6 cut(s) 14, 221, 324, 337, 377, 582
BsiSI CCGG 3 cut(s) 478, 485, 554
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 4 cut(s) 131, 394, 438, 484
BsmFI GGGAC 1 cut(s) 515
BsnI GGCC 6 cut(s) 14, 221, 324, 337, 377, 582
Bsp1286I GDGCHC 1 cut(s) 484
Bsp143I GATC 3 cut(s) 44, 111, 436
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 3 cut(s) 55, 382, 398
BspANI GGCC 6 cut(s) 14, 221, 324, 337, 377, 582
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 483
BspPI GGATC 1 cut(s) 106
BsrDI GCAATG 4 cut(s) 148, 171, 249, 272
BssECI CCNNGG 4 cut(s) 9, 99, 332, 570
BssMI GATC 3 cut(s) 44, 111, 436
BssNI GRCGYC 2 cut(s) 165, 251
BssT1I CCWWGG 2 cut(s) 9, 99
Bst2UI CCWGG 1 cut(s) 572
Bst4CI ACNGT 1 cut(s) 199
BstACI GRCGYC 2 cut(s) 165, 251
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 591
BstDSI CCRYGG 2 cut(s) 9, 332
BstEII GGTNACC 1 cut(s) 511
BstF5I GGATG 2 cut(s) 369, 384
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 3 cut(s) 47, 114, 439
BstMBI GATC 3 cut(s) 44, 111, 436
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 572
BstPI GGTNACC 1 cut(s) 511
BstSCI CCNGG 3 cut(s) 477, 553, 570
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 77, 550
BstXI CCANNNNNNTGG 1 cut(s) 578
BsuRI GGCC 6 cut(s) 14, 221, 324, 337, 377, 582
BtgI CCRYGG 2 cut(s) 9, 332
BtgZI GCGATG 1 cut(s) 505
BtsCI GGATG 2 cut(s) 369, 384
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 41
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 581
CseI GACGC 4 cut(s) 61, 154, 259, 530
Csp6I GTAC 1 cut(s) 449
CviAII CATG 3 cut(s) 10, 212, 360
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 1 cut(s) 591
DpnI GATC 3 cut(s) 46, 113, 438
DpnII GATC 3 cut(s) 44, 111, 436
DrdI GACNNNNNNGTC 2 cut(s) 143, 277
DseDI GACNNNNNNGTC 2 cut(s) 143, 277
EaeI YGGCCR 2 cut(s) 219, 335
EciI GGCGGA 1 cut(s) 413
Eco130I CCWWGG 2 cut(s) 9, 99
Eco147I AGGCCT 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 484
Eco57I CTGAAG 2 cut(s) 437, 557
Eco91I GGTNACC 1 cut(s) 511
EcoO65I GGTNACC 1 cut(s) 511
EcoRII CCWGG 1 cut(s) 570
EcoT14I CCWWGG 2 cut(s) 9, 99
EcoT38I GRGCYC 1 cut(s) 484
ErhI CCWWGG 2 cut(s) 9, 99
FaeI CATG 3 cut(s) 13, 215, 363
FaiI YATR 4 cut(s) 11, 213, 361, 504
FaqI GGGAC 1 cut(s) 515
FatI CATG 3 cut(s) 9, 211, 359
Fnu4HI GCNGC 2 cut(s) 91, 564
FokI GGATG 2 cut(s) 371, 376
FriOI GRGCYC 1 cut(s) 484
Fsp4HI GCNGC 2 cut(s) 91, 564
FspBI CTAG 2 cut(s) 428, 610
GlaI GCGC 1 cut(s) 330
GluI GCNGC 2 cut(s) 91, 564
GsuI CTGGAG 1 cut(s) 515
HaeIII GGCC 6 cut(s) 14, 221, 324, 337, 377, 582
HapII CCGG 3 cut(s) 478, 485, 554
HgaI GACGC 4 cut(s) 61, 154, 259, 530
HhaI GCGC 1 cut(s) 331
Hin1I GRCGYC 2 cut(s) 165, 251
Hin1II CATG 3 cut(s) 13, 215, 363
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HinfI GANTC 3 cut(s) 22, 32, 104
HpaII CCGG 3 cut(s) 478, 485, 554
HphI GGTGA 1 cut(s) 505
Hpy188I TCNGA 2 cut(s) 441, 537
Hpy188III TCNNGA 2 cut(s) 19, 494
HpyAV CCTTC 5 cut(s) 25, 67, 135, 367, 388
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 591
HpySE526I ACGT 1 cut(s) 474
Hsp92I GRCGYC 2 cut(s) 165, 251
Hsp92II CATG 3 cut(s) 13, 215, 363
HspAI GCGC 1 cut(s) 329
Kzo9I GATC 3 cut(s) 44, 111, 436
LmnI GCTCC 1 cut(s) 487
Lsp1109I GCAGC 2 cut(s) 77, 550
LweI GCATC 1 cut(s) 393
MaeI CTAG 2 cut(s) 428, 610
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 2 cut(s) 470, 511
MalI GATC 3 cut(s) 46, 113, 438
MboI GATC 3 cut(s) 44, 111, 436
MboII GAAGA 2 cut(s) 39, 120
MfeI CAATTG 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 484
MlsI TGGCCA 1 cut(s) 337
MluCI AATT 5 cut(s) 120, 224, 304, 339, 344
MluNI TGGCCA 1 cut(s) 337
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 3 cut(s) 118, 490, 543
Mox20I TGGCCA 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 377
MscI TGGCCA 1 cut(s) 337
MseI TTAA 1 cut(s) 356
Msp20I TGGCCA 1 cut(s) 337
MspI CCGG 3 cut(s) 478, 485, 554
MspR9I CCNGG 3 cut(s) 479, 555, 572
MunI CAATTG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 572
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 266
NciI CCSGG 2 cut(s) 479, 555
NcoI CCATGG 1 cut(s) 9
NdeII GATC 3 cut(s) 44, 111, 436
NlaIII CATG 3 cut(s) 13, 215, 363
NlaIV GGNNCC 1 cut(s) 483
NmuCI GTSAC 1 cut(s) 511
PceI AGGCCT 1 cut(s) 377
PcsI WCGNNNNNNNCGW 3 cut(s) 153, 162, 257
PdmI GAANNNNTTC 1 cut(s) 377
PfeI GAWTC 2 cut(s) 22, 32
PflFI GACNNNGTC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 92, 565
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 570
PspEI GGTNACC 1 cut(s) 511
PspGI CCWGG 1 cut(s) 570
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 1 cut(s) 581
PsyI GACNNNGTC 1 cut(s) 55
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 2 cut(s) 91, 564
Sau3AI GATC 3 cut(s) 44, 111, 436
Sau96I GGNCC 1 cut(s) 581
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 3 cut(s) 479, 555, 572
SduI GDGCHC 1 cut(s) 484
SetI ASST 7 cut(s) 41, 68, 429, 450, 477, 551, 592
SfaNI GCATC 1 cut(s) 393
Sse9I AATT 5 cut(s) 120, 224, 304, 339, 344
SseBI AGGCCT 1 cut(s) 377
SsiI CCGC 3 cut(s) 55, 382, 398
SspMI CTAG 2 cut(s) 428, 610
StuI AGGCCT 1 cut(s) 377
StyD4I CCNGG 3 cut(s) 477, 553, 570
StyI CCWWGG 2 cut(s) 9, 99
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 477
TaqI TCGA 4 cut(s) 50, 71, 110, 423
TasI AATT 5 cut(s) 120, 224, 304, 339, 344
TfiI GAWTC 2 cut(s) 22, 32
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 2 cut(s) 90, 563
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 1 cut(s) 200
TspRI CASTG 1 cut(s) 66
Tth111I GACNNNGTC 1 cut(s) 55
XapI RAATTY 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 377
XspI CTAG 2 cut(s) 428, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.