Rroxscaffold_5G00336900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000169
Physical Location & Seq
Reverse (-)
4789709 .. 4795562
5854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336900.1

Sequence Viewer

Length: 231 bp
ATGTCTTTGGGAATGTTTTTGATACACCAAGGCCTCAATAGTGGAGGGATAGAGGCAGTTGTTGTGTTAGTTTCGAATAAGAGAAGTCGTAATGGAGGTGGTACTCCTTCTTCTAAGAAGTTGAGATCTCTATTGGGAGGTCACTGTCCTACTATAGAAGCCGAGCTTTTCGGTTTGGAGGAGGTTAATGGAGCTGTGGATGAGGAAGTGGTGATTCGAAAAGAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.09

Weight (kDa)

6.72

Isoelectric Point (pI)

66.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 103
AluBI AGCT 2 cut(s) 166, 194
AluI AGCT 2 cut(s) 166, 194
AoxI GGCC 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 223
AsuII TTCGAA 2 cut(s) 74, 217
BarI GAAGNNNNNNTAC 2 cut(s) 94, 126
BfmI CTRYAG 1 cut(s) 153
BglII AGATCT 1 cut(s) 125
Bpu14I TTCGAA 2 cut(s) 74, 217
BsaJI CCNNGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 194
BshFI GGCC 1 cut(s) 33
BsnI GGCC 1 cut(s) 33
Bsp119I TTCGAA 2 cut(s) 74, 217
Bsp143I GATC 1 cut(s) 125
BspANI GGCC 1 cut(s) 33
BspT104I TTCGAA 2 cut(s) 74, 217
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 146
BstBI TTCGAA 2 cut(s) 74, 217
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 1 cut(s) 128
BstMBI GATC 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BsuRI GGCC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 142
Csp6I GTAC 1 cut(s) 102
CviJI RGCY 4 cut(s) 33, 161, 166, 194
CviKI_1 RGCY 4 cut(s) 33, 161, 166, 194
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 127
DpnII GATC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 28
Eco147I AGGCCT 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaiI YATR 1 cut(s) 155
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FokI GGATG 1 cut(s) 212
HaeIII GGCC 1 cut(s) 33
HinfI GANTC 1 cut(s) 214
HphI GGTGA 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 114
Kzo9I GATC 1 cut(s) 125
LmnI GCTCC 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 140
MalI GATC 1 cut(s) 127
MboI GATC 1 cut(s) 125
MboII GAAGA 1 cut(s) 102
MflI RGATCY 1 cut(s) 125
MnlI CCTC 8 cut(s) 38, 44, 46, 89, 131, 172, 175, 196
MseI TTAA 1 cut(s) 186
NdeII GATC 1 cut(s) 125
NmeAIII GCCGAG 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 140
NspV TTCGAA 2 cut(s) 74, 217
PceI AGGCCT 1 cut(s) 33
PfeI GAWTC 1 cut(s) 214
PsuI RGATCY 1 cut(s) 125
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 186
Sau3AI GATC 1 cut(s) 125
SetI ASST 6 cut(s) 100, 142, 168, 186, 196, 230
SfcI CTRYAG 1 cut(s) 153
SfuI TTCGAA 2 cut(s) 74, 217
SgeI CNNG 2 cut(s) 41, 175
SseBI AGGCCT 1 cut(s) 33
StuI AGGCCT 1 cut(s) 33
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 146
TaqI TCGA 2 cut(s) 74, 217
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspRI CASTG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.