Rmu_ssc0000287.1_g000010

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000287.1
OG0000169
Physical Location & Seq
Reverse (-)
30261 .. 31533
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000287.1_g000010.1.cds

Sequence Viewer

Length: 885 bp
atggcatccattgacggggtaacagcgagctttgctgcctcgcttgctcttgccgaagggggacgcgcccttgacttgggaaagattggtggaggtccggtgcggaagtcctcccaatcttttctccttggaaagcctttgactcggaaacccatcgatccaaaggccttcatgtctcacttcaatcgaacctggatggtggataaggaatttagggttcaagagcgacctggtgacctgttcttgttctcctttgctgctgcacatgatcgtaacaaggttcttcgagggggcgtctggtgttttgatcgagccccagtctattttgaagaatatgatggagttaagcccttgcatgaaattcaattcaaacatcttcggatctggactagggttactggtatacctcctctgtatgaagaacccgagaatctcaccttgattggcaacctgttgggcgatttcttggaatacgacaagaaggagtttaagaagggggtgattagggttttattcccccatgacatctctaaatcgatcttgcttgaaagaaaagtcttcctagatactggggttgaacctctgttgcagtttcagttcgagcatctacgagggagatgctctcgggcttgctttcccaagaaattcaaaacaatattgggtggcaagattcctacactgcatgcggatgcacttggcctcattaaagaggatagtgatctcactttgatcactatgaaaaagaagtctggcaggcctcttggaagcaagaacaaaactcaacgtgcaaacaagaagcttgatggtactcctccgaagattacttatcccactagcactggaacagttcccagccctagagacaagggcaaaggaaagatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

294

Amino Acids

32.95

Weight (kDa)

9.82

Isoelectric Point (pI)

29.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 403
AccII CGCG 1 cut(s) 66
AciI CCGC 2 cut(s) 103, 686
AclWI GGATC 2 cut(s) 152, 389
AcsI RAATTY 3 cut(s) 209, 360, 644
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 1 cut(s) 808
AfiI CCNNNNNNNGG 2 cut(s) 15, 76
AgsI TTSAA 8 cut(s) 184, 221, 329, 365, 370, 548, 578, 649
AjnI CCWGG 2 cut(s) 191, 229
AluBI AGCT 2 cut(s) 30, 799
AluI AGCT 2 cut(s) 30, 799
Alw26I GTCTC 2 cut(s) 180, 855
AlwI GGATC 2 cut(s) 152, 389
Ama87I CYCGRG 2 cut(s) 425, 624
AoxI GGCC 3 cut(s) 165, 697, 755
ApeKI GCWGC 3 cut(s) 35, 257, 260
ApoI RAATTY 3 cut(s) 209, 360, 644
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 3 cut(s) 245, 427, 511
AvaI CYCGRG 2 cut(s) 425, 624
AvaII GGWCC 1 cut(s) 95
BaeI ACNNNNGTAYC 2 cut(s) 558, 591
BanII GRGCYC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 550
BbvI GCAGC 3 cut(s) 22, 244, 247
BccI CCATC 4 cut(s) 161, 190, 332, 797
BcgI CGANNNNNNTGC 2 cut(s) 600, 634
BciT130I CCWGG 2 cut(s) 193, 231
BclI TGATCA 1 cut(s) 729
BcoDI GTCTC 2 cut(s) 180, 855
BfaI CTAG 4 cut(s) 390, 563, 834, 858
BisI GCNGC 3 cut(s) 36, 258, 261
BlsI GCNGC 3 cut(s) 37, 259, 262
Bme1390I CCNGG 2 cut(s) 193, 231
Bme18I GGWCC 1 cut(s) 95
BmeT110I CYCGRG 2 cut(s) 425, 624
BmgT120I GGNCC 1 cut(s) 95
BmrFI CCNGG 2 cut(s) 193, 231
BmrI ACTGGG 2 cut(s) 311, 579
BmsI GCATC 4 cut(s) 14, 608, 613, 679
BmuI ACTGGG 2 cut(s) 311, 579
BpiI GAAGAC 1 cut(s) 550
BplI GAGNNNNNCTC 2 cut(s) 607, 639
Bsa29I ATCGAT 2 cut(s) 156, 536
BsaBI GATNNNNATC 1 cut(s) 717
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 76
Bse1I ACTGG 4 cut(s) 317, 403, 574, 844
Bse8I GATNNNNATC 1 cut(s) 717
BseBI CCWGG 2 cut(s) 193, 231
BseCI ATCGAT 2 cut(s) 156, 536
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 3 cut(s) 5, 201, 694
BseJI GATNNNNATC 1 cut(s) 717
BseLI CCNNNNNNNGG 2 cut(s) 15, 76
BseNI ACTGG 4 cut(s) 317, 403, 574, 844
BseRI GAGGAG 2 cut(s) 399, 801
BseXI GCAGC 3 cut(s) 22, 244, 247
BseYI CCCAGC 1 cut(s) 851
BsgI GTGCAG 1 cut(s) 246
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 3 cut(s) 167, 699, 757
BshVI ATCGAT 2 cut(s) 156, 536
BsiHKCI CYCGRG 2 cut(s) 425, 624
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 15, 76
BsmAI GTCTC 2 cut(s) 180, 855
BsmFI GGGAC 1 cut(s) 75
BsnI GGCC 3 cut(s) 167, 699, 757
BsoBI CYCGRG 2 cut(s) 425, 624
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 7 cut(s) 157, 268, 307, 381, 537, 718, 729
BspACI CCGC 2 cut(s) 103, 686
BspANI GGCC 3 cut(s) 167, 699, 757
BspDI ATCGAT 2 cut(s) 156, 536
BspFNI CGCG 1 cut(s) 66
BspPI GGATC 2 cut(s) 152, 389
BsrI ACTGG 4 cut(s) 317, 403, 574, 844
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 7 cut(s) 157, 268, 307, 381, 537, 718, 729
BssNAI GTATAC 1 cut(s) 404
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 127
Bst1107I GTATAC 1 cut(s) 404
Bst2UI CCWGG 2 cut(s) 193, 231
Bst4CI ACNGT 1 cut(s) 847
BstACI GRCGYC 1 cut(s) 294
BstC8I GCNNGC 5 cut(s) 28, 45, 631, 684, 755
BstEII GGTNACC 1 cut(s) 233
BstF5I GGATG 3 cut(s) 5, 201, 694
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 7 cut(s) 160, 271, 310, 384, 540, 721, 732
BstMAI GTCTC 2 cut(s) 180, 855
BstMBI GATC 7 cut(s) 157, 268, 307, 381, 537, 718, 729
BstMWI GCNNNNNNNGC 2 cut(s) 32, 44
BstNI CCWGG 2 cut(s) 193, 231
BstNSI RCATGY 1 cut(s) 686
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 191, 229
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 3 cut(s) 22, 244, 247
BstV2I GAAGAC 1 cut(s) 550
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
BstZ17I GTATAC 1 cut(s) 404
Bsu15I ATCGAT 2 cut(s) 156, 536
BsuRI GGCC 3 cut(s) 167, 699, 757
BsuTUI ATCGAT 2 cut(s) 156, 536
BtsCI GGATG 3 cut(s) 5, 201, 694
BtsI GCAGTG 1 cut(s) 677
BtsIMutI CAGTG 2 cut(s) 677, 837
Cac8I GCNNGC 5 cut(s) 28, 45, 631, 684, 755
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 95
ClaI ATCGAT 2 cut(s) 156, 536
CseI GACGC 2 cut(s) 72, 283
CsiI ACCWGGT 1 cut(s) 229
Csp6I GTAC 1 cut(s) 807
CviAII CATG 5 cut(s) 172, 266, 356, 521, 683
CviQI GTAC 1 cut(s) 807
DpnI GATC 7 cut(s) 159, 270, 309, 383, 539, 720, 731
DpnII GATC 7 cut(s) 157, 268, 307, 381, 537, 718, 729
Eco130I CCWWGG 1 cut(s) 127
Eco147I AGGCCT 2 cut(s) 167, 757
Eco24I GRGCYC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 95
Eco88I CYCGRG 2 cut(s) 425, 624
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 191, 229
EcoT14I CCWWGG 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 5 cut(s) 175, 269, 359, 524, 686
FaiI YATR 9 cut(s) 173, 267, 336, 357, 404, 417, 522, 684, 737
FaqI GGGAC 1 cut(s) 75
FatI CATG 5 cut(s) 171, 265, 355, 520, 682
FbaI TGATCA 1 cut(s) 729
FblI GTMKAC 1 cut(s) 403
Fnu4HI GCNGC 3 cut(s) 36, 258, 261
FokI GGATG 2 cut(s) 208, 701
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 3 cut(s) 36, 258, 261
FspBI CTAG 4 cut(s) 390, 563, 834, 858
GlaI GCGC 1 cut(s) 67
GluI GCNGC 3 cut(s) 36, 258, 261
GsaI CCCAGC 1 cut(s) 855
HaeIII GGCC 3 cut(s) 167, 699, 757
HapII CCGG 1 cut(s) 98
HgaI GACGC 2 cut(s) 72, 283
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 5 cut(s) 175, 269, 359, 524, 686
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 797
HinfI GANTC 3 cut(s) 142, 430, 670
HpaII CCGG 1 cut(s) 98
HphI GGTGA 3 cut(s) 245, 427, 511
Hpy166II GTNNAC 1 cut(s) 404
Hpy188I TCNGA 3 cut(s) 147, 381, 816
Hpy188III TCNNGA 2 cut(s) 221, 385
Hpy8I GTNNAC 1 cut(s) 404
HpyAV CCTTC 4 cut(s) 50, 178, 475, 487
HpyCH4III ACNGT 1 cut(s) 847
HpyCH4IV ACGT 1 cut(s) 784
HpyCH4V TGCA 6 cut(s) 263, 355, 589, 682, 692, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 44
HpySE526I ACGT 1 cut(s) 784
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 5 cut(s) 175, 269, 359, 524, 686
HspAI GCGC 1 cut(s) 66
Ksp22I TGATCA 1 cut(s) 729
Kzo9I GATC 7 cut(s) 157, 268, 307, 381, 537, 718, 729
Lsp1109I GCAGC 3 cut(s) 22, 244, 247
LweI GCATC 4 cut(s) 14, 608, 613, 679
MabI ACCWGGT 1 cut(s) 229
MaeI CTAG 4 cut(s) 390, 563, 834, 858
MaeII ACGT 1 cut(s) 784
MaeIII GTNAC 4 cut(s) 19, 233, 272, 394
MalI GATC 7 cut(s) 159, 270, 309, 383, 539, 720, 731
MboI GATC 7 cut(s) 157, 268, 307, 381, 537, 718, 729
MboII GAAGA 6 cut(s) 275, 341, 368, 431, 550, 829
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 4 cut(s) 209, 360, 365, 644
MlyI GAGTC 1 cut(s) 136
MseI TTAA 3 cut(s) 345, 489, 705
MslI CAYNNNNRTG 1 cut(s) 687
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 2 cut(s) 193, 231
MvaI CCWGG 2 cut(s) 193, 231
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 32, 44
NdeII GATC 7 cut(s) 157, 268, 307, 381, 537, 718, 729
NlaIII CATG 5 cut(s) 175, 269, 359, 524, 686
NmuCI GTSAC 1 cut(s) 233
NspI RCATGY 1 cut(s) 686
PaeI GCATGC 1 cut(s) 686
PceI AGGCCT 2 cut(s) 167, 757
PfeI GAWTC 2 cut(s) 430, 670
PkrI GCNGC 3 cut(s) 37, 259, 262
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 191, 229
PspEI GGTNACC 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 851
PspGI CCWGG 2 cut(s) 191, 229
PspPI GGNCC 1 cut(s) 95
PsuI RGATCY 1 cut(s) 381
RsaI GTAC 1 cut(s) 808
RsaNI GTAC 1 cut(s) 807
RseI CAYNNNNRTG 1 cut(s) 687
SaqAI TTAA 3 cut(s) 345, 489, 705
SatI GCNGC 3 cut(s) 36, 258, 261
Sau3AI GATC 7 cut(s) 157, 268, 307, 381, 537, 718, 729
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 2 cut(s) 193, 231
SduI GDGCHC 1 cut(s) 316
SexAI ACCWGGT 1 cut(s) 229
SfaNI GCATC 4 cut(s) 14, 608, 613, 679
SinI GGWCC 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 687
SphI GCATGC 1 cut(s) 686
Sse9I AATT 4 cut(s) 209, 360, 365, 644
SseBI AGGCCT 2 cut(s) 167, 757
SsiI CCGC 2 cut(s) 103, 686
SspI AATATT 1 cut(s) 657
SspMI CTAG 4 cut(s) 390, 563, 834, 858
StuI AGGCCT 2 cut(s) 167, 757
StyD4I CCNGG 2 cut(s) 191, 229
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 847
TaiI ACGT 1 cut(s) 787
TaqI TCGA 6 cut(s) 156, 187, 286, 310, 536, 600
TasI AATT 4 cut(s) 209, 360, 365, 644
TfiI GAWTC 2 cut(s) 430, 670
Tru1I TTAA 3 cut(s) 345, 489, 705
Tru9I TTAA 3 cut(s) 345, 489, 705
TscAI CASTG 2 cut(s) 684, 844
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 3 cut(s) 35, 257, 260
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 4 cut(s) 160, 372, 432, 752
TspRI CASTG 2 cut(s) 684, 844
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 3 cut(s) 209, 360, 644
XceI RCATGY 1 cut(s) 686
XmiI GTMKAC 1 cut(s) 403
XspI CTAG 4 cut(s) 390, 563, 834, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.