Rmu_sc0001507.1_g000009

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001507.1
OG0000169
Physical Location & Seq
Reverse (-)
23801 .. 25106
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001507.1_g000009.1.cds

Sequence Viewer

Length: 972 bp
atggcctccgttgatgcggtaatagcgagctttgttgcctcgcttgctcttgctaaagggggtcgtgcctctgatctgaggaagatcggcggagaacccgagaacctcacgttgattggcaatcttttggctagtttcttggactacaacaagaaggagtttaagaagggggtgattagggttttgatcatccatgacatatctaaaccgatccagcttgaaacaagagtcttcctagatactggggttgaacctgtgttgcaattccagttcgagcacctgcgagggagatgctctcaatgtggtttggtcacgcatgccgggcttgcttgtaaggagccaactgcagtaaaccctactcctagggttttgcactttctaggagcttcgacctcaggtaggttctttgctttttctacaaagaacaagggagatattttctttacttccccgaccatcccaaagaagaagcggcctgtctttcgtcgagtggagcgtctaagctcggatcctccttctcccacatatccggttccagcagcagtcagtcctgcctctacgggtattaatttggagcacaggttggatagtaatggagccctaggtgagaaacttgctatgtatgtttcttgtgatcttgttgttcctacaggtatgcaaaagaatcagaataatgatctgccttccaagaaacaggagcgtagtggtgatagccatccttctcctaaaaaattcaaaacaatcttgggtggcaagattcctacactacaggtggaggcacttgacctcattggggaggatagcgatcttactttgctcactctgaaaaagaagtctggtaggtctcttggaagcaagaacaaaactcagcgtgccaacaagaagcttgatggtgctcctctgaagatcacttatcctactagcactagaacagttcccagccctagagacaagggcagaggaaaactttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

323

Amino Acids

35.07

Weight (kDa)

9.94

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 288
Acc36I ACCTGC 1 cut(s) 288
AciI CCGC 3 cut(s) 17, 90, 472
AclWI GGATC 3 cut(s) 205, 503, 516
AcsI RAATTY 1 cut(s) 731
AcuI CTGAAG 1 cut(s) 923
AfiI CCNNNNNNNGG 2 cut(s) 399, 793
AgsI TTSAA 3 cut(s) 221, 251, 736
AluBI AGCT 5 cut(s) 30, 217, 386, 504, 886
AluI AGCT 5 cut(s) 30, 217, 386, 504, 886
Alw21I GWGCWC 3 cut(s) 279, 579, 898
Alw26I GTCTC 2 cut(s) 849, 942
AlwI GGATC 3 cut(s) 205, 503, 516
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 2 cut(s) 3, 473
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 1 cut(s) 731
AseI ATTAAT 1 cut(s) 567
AspA2I CCTAGG 2 cut(s) 362, 601
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 3 cut(s) 184, 617, 719
AvaI CYCGRG 1 cut(s) 98
AvrII CCTAGG 2 cut(s) 362, 601
AxyI CCTNAGG 1 cut(s) 394
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BamHI GGATCC 1 cut(s) 508
BanII GRGCYC 1 cut(s) 601
BbsI GAAGAC 1 cut(s) 223
Bbv12I GWGCWC 3 cut(s) 279, 579, 898
BbvI GCAGC 1 cut(s) 551
BccI CCATC 3 cut(s) 464, 723, 884
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BclI TGATCA 1 cut(s) 186
BcnI CCSGG 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 849, 942
BfaI CTAG 8 cut(s) 132, 236, 363, 380, 602, 921, 927, 945
BfmI CTRYAG 3 cut(s) 345, 648, 767
BfuAI ACCTGC 1 cut(s) 288
BisI GCNGC 2 cut(s) 473, 540
BlnI CCTAGG 2 cut(s) 362, 601
BlsI GCNGC 2 cut(s) 474, 541
Bme1390I CCNGG 1 cut(s) 322
BmeT110I CYCGRG 1 cut(s) 98
BmiI GGNNCC 4 cut(s) 339, 510, 534, 598
BmrFI CCNGG 1 cut(s) 322
BmrI ACTGGG 1 cut(s) 252
BmsI GCATC 2 cut(s) 4, 281
BmuI ACTGGG 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 223
BplI GAGNNNNNCTC 2 cut(s) 280, 312
BpuMI CCSGG 1 cut(s) 322
BsaBI GATNNNNATC 2 cut(s) 714, 804
BsaI GGTCTC 1 cut(s) 849
BsaJI CCNNGG 2 cut(s) 362, 601
BsaWI WCCGGW 1 cut(s) 529
BsaXI ACNNNNNCTCC 2 cut(s) 566, 596
Bsc4I CCNNNNNNNGG 2 cut(s) 399, 793
Bse1I ACTGG 2 cut(s) 247, 268
Bse21I CCTNAGG 1 cut(s) 394
Bse8I GATNNNNATC 2 cut(s) 714, 804
BseDI CCNNGG 2 cut(s) 362, 601
BseGI GGATG 3 cut(s) 189, 456, 715
BseJI GATNNNNATC 2 cut(s) 714, 804
BseLI CCNNNNNNNGG 2 cut(s) 399, 793
BseMII CTCAG 3 cut(s) 68, 408, 881
BseNI ACTGG 2 cut(s) 247, 268
BseRI GAGGAG 1 cut(s) 888
BseXI GCAGC 1 cut(s) 551
BseYI CCCAGC 1 cut(s) 938
BshFI GGCC 2 cut(s) 5, 475
BsiHKAI GWGCWC 3 cut(s) 279, 579, 898
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 2 cut(s) 321, 530
BslI CCNNNNNNNGG 2 cut(s) 399, 793
BsmAI GTCTC 2 cut(s) 849, 942
BsnI GGCC 2 cut(s) 5, 475
Bso31I GGTCTC 1 cut(s) 849
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 4 cut(s) 279, 579, 601, 898
Bsp143I GATC 9 cut(s) 73, 84, 186, 210, 508, 634, 676, 805, 906
BspACI CCGC 3 cut(s) 17, 90, 472
BspANI GGCC 2 cut(s) 5, 475
BspCNI CTCAG 3 cut(s) 69, 407, 880
BspLI GGNNCC 4 cut(s) 339, 510, 534, 598
BspMAI CTGCAG 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 288
BspPI GGATC 3 cut(s) 205, 503, 516
BspTNI GGTCTC 1 cut(s) 849
BsrI ACTGG 2 cut(s) 247, 268
BssECI CCNNGG 2 cut(s) 362, 601
BssMI GATC 9 cut(s) 73, 84, 186, 210, 508, 634, 676, 805, 906
BssT1I CCWWGG 2 cut(s) 362, 601
Bst4CI ACNGT 1 cut(s) 934
BstC8I GCNNGC 5 cut(s) 28, 45, 318, 327, 873
BstDEI CTNAG 4 cut(s) 77, 394, 500, 867
BstENI CCTNNNNNAGG 1 cut(s) 397
BstF5I GGATG 3 cut(s) 189, 456, 715
BstKTI GATC 9 cut(s) 76, 87, 189, 213, 511, 637, 679, 808, 909
BstMAI GTCTC 2 cut(s) 849, 942
BstMBI GATC 9 cut(s) 73, 84, 186, 210, 508, 634, 676, 805, 906
BstMWI GCNNNNNNNGC 4 cut(s) 23, 44, 322, 326
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 3 cut(s) 345, 648, 767
BstV1I GCAGC 1 cut(s) 551
BstV2I GAAGAC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
Bsu36I CCTNAGG 1 cut(s) 394
BsuRI GGCC 2 cut(s) 5, 475
BtsCI GGATG 3 cut(s) 189, 456, 715
BveI ACCTGC 1 cut(s) 288
Cac8I GCNNGC 5 cut(s) 28, 45, 318, 327, 873
CseI GACGC 1 cut(s) 485
CviAII CATG 2 cut(s) 194, 317
DdeI CTNAG 4 cut(s) 77, 394, 500, 867
DpnI GATC 9 cut(s) 75, 86, 188, 212, 510, 636, 678, 807, 908
DpnII GATC 9 cut(s) 73, 84, 186, 210, 508, 634, 676, 805, 906
EciI GGCGGA 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 362, 601
Eco24I GRGCYC 1 cut(s) 601
Eco31I GGTCTC 1 cut(s) 849
Eco57I CTGAAG 1 cut(s) 923
Eco81I CCTNAGG 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 98
EcoNI CCTNNNNNAGG 1 cut(s) 397
EcoT14I CCWWGG 2 cut(s) 362, 601
EcoT38I GRGCYC 1 cut(s) 601
ErhI CCWWGG 2 cut(s) 362, 601
FaeI CATG 2 cut(s) 197, 320
FaiI YATR 7 cut(s) 195, 200, 318, 526, 620, 624, 656
FatI CATG 2 cut(s) 193, 316
FbaI TGATCA 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 473, 540
FokI GGATG 3 cut(s) 176, 443, 702
FriOI GRGCYC 1 cut(s) 601
Fsp4HI GCNGC 2 cut(s) 473, 540
FspBI CTAG 8 cut(s) 132, 236, 363, 380, 602, 921, 927, 945
GluI GCNGC 2 cut(s) 473, 540
GsaI CCCAGC 1 cut(s) 942
HaeIII GGCC 2 cut(s) 5, 475
HapII CCGG 2 cut(s) 321, 530
HgaI GACGC 1 cut(s) 485
Hin1II CATG 2 cut(s) 197, 320
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 3 cut(s) 228, 664, 757
HpaII CCGG 2 cut(s) 321, 530
HphI GGTGA 3 cut(s) 184, 617, 719
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 6 cut(s) 73, 78, 508, 669, 825, 903
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 1 cut(s) 489
HpyAV CCTTC 5 cut(s) 148, 160, 525, 693, 729
HpyCH4III ACNGT 1 cut(s) 934
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 4 cut(s) 262, 347, 373, 658
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 44, 322, 326
HpyF3I CTNAG 4 cut(s) 77, 394, 500, 867
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 2 cut(s) 197, 320
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 9 cut(s) 73, 84, 186, 210, 508, 634, 676, 805, 906
LmnI GCTCC 7 cut(s) 337, 383, 493, 574, 596, 697, 901
Lsp1109I GCAGC 1 cut(s) 551
LweI GCATC 2 cut(s) 4, 281
MaeI CTAG 8 cut(s) 132, 236, 363, 380, 602, 921, 927, 945
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 310
MalI GATC 9 cut(s) 75, 86, 188, 212, 510, 636, 678, 807, 908
MboI GATC 9 cut(s) 73, 84, 186, 210, 508, 634, 676, 805, 906
MboII GAAGA 4 cut(s) 94, 223, 478, 916
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 4 cut(s) 279, 579, 601, 898
MluCI AATT 3 cut(s) 263, 568, 731
MlyI GAGTC 1 cut(s) 237
MmeI TCCRAC 1 cut(s) 564
MseI TTAA 2 cut(s) 162, 567
MspI CCGG 2 cut(s) 321, 530
MspR9I CCNGG 1 cut(s) 322
MwoI GCNNNNNNNGC 4 cut(s) 23, 44, 322, 326
NciI CCSGG 1 cut(s) 322
NdeII GATC 9 cut(s) 73, 84, 186, 210, 508, 634, 676, 805, 906
NlaIII CATG 2 cut(s) 197, 320
NlaIV GGNNCC 4 cut(s) 339, 510, 534, 598
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 1 cut(s) 320
PaeI GCATGC 1 cut(s) 320
PaqCI CACCTGC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 493
PfeI GAWTC 2 cut(s) 664, 757
PkrI GCNGC 2 cut(s) 474, 541
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PshBI ATTAAT 1 cut(s) 567
PspFI CCCAGC 1 cut(s) 938
PspN4I GGNNCC 4 cut(s) 339, 510, 534, 598
PstI CTGCAG 1 cut(s) 349
PsuI RGATCY 1 cut(s) 508
SaqAI TTAA 2 cut(s) 162, 567
SatI GCNGC 2 cut(s) 473, 540
Sau3AI GATC 9 cut(s) 73, 84, 186, 210, 508, 634, 676, 805, 906
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 4 cut(s) 279, 579, 601, 898
SfaNI GCATC 2 cut(s) 4, 281
SfcI CTRYAG 3 cut(s) 345, 648, 767
SphI GCATGC 1 cut(s) 320
Sse9I AATT 3 cut(s) 263, 568, 731
SsiI CCGC 3 cut(s) 17, 90, 472
SspMI CTAG 8 cut(s) 132, 236, 363, 380, 602, 921, 927, 945
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 2 cut(s) 362, 601
TaaI ACNGT 1 cut(s) 934
TaiI ACGT 1 cut(s) 113
TaqI TCGA 3 cut(s) 273, 389, 487
TasI AATT 3 cut(s) 263, 568, 731
TauI GCSGC 1 cut(s) 475
TfiI GAWTC 2 cut(s) 664, 757
Tru1I TTAA 2 cut(s) 162, 567
Tru9I TTAA 2 cut(s) 162, 567
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 539
Tsp45I GTSAC 1 cut(s) 310
VspI ATTAAT 1 cut(s) 567
XagI CCTNNNNNAGG 1 cut(s) 397
XapI RAATTY 1 cut(s) 731
XceI RCATGY 1 cut(s) 320
XmaJI CCTAGG 2 cut(s) 362, 601
XspI CTAG 8 cut(s) 132, 236, 363, 380, 602, 921, 927, 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.