Rorug01G0294000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000169
Physical Location & Seq
Forward (+)
40988485 .. 40989156
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0294000.1

Sequence Viewer

Length: 672 bp
ATGGAACCACAAACCCAGCCACCAACCGAGGATGGAGGAAGCAACAAATCAGCCGGGAGTAGTACTAATAGGCTTTGCAGGCAGAGCAATACCAGGTGGATTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTACTACAACAAGGGAGTTAGGTCCCCAAATGCAGAGCAGATTCAGAGGATCTGTCTCCACCTGAGATGGTACGGATCGGTTGAGAGCAAGAACGTCTATTATTGGTTCGCGAACCAAAGGGTTCGGGAGAAACAGAAGAAGAAGATCACTTCGGATGTTCATGTGCCCATGCAAAGATCAAGGCTTGTTAGTAATGGTAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCGGATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTGATTTCTTTTAACGGGCAAATGGGGAACTATGGTGGTTATGGATCTATGAACACGGAGATTGAAACCCTTCCTCTATTCCCCATGCACGGTGAGGACAACTTTGGCAACATGAAGACTATTTCCGAGGGAGGTGGCGGCTACAACTACTACTCCGATGGATGGGGCGGCTACAACAGTGGCTCTCACATTTCCCTTGAGCTTAGCCTTGACTCTTACGGCTCGACCTATTTTCCCGCGAAGGTGTTTTCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.86

Weight (kDa)

8.74

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 31 - 91 6.3e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 341
AccII CGCG 2 cut(s) 248, 653
AciI CCGC 3 cut(s) 552, 582, 651
AclWI GGATC 5 cut(s) 194, 220, 369, 388, 466
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 3 cut(s) 64, 209, 343
AfiI CCNNNNNNNGG 2 cut(s) 503, 576
AgsI TTSAA 1 cut(s) 479
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 3 cut(s) 136, 410, 616
AluI AGCT 3 cut(s) 136, 410, 616
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 5 cut(s) 194, 220, 369, 388, 466
Asp700I GAANNNNTTC 1 cut(s) 483
Asp718I GGTACC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 518
AvaII GGWCC 1 cut(s) 159
AxyI CCTNAGG 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 306
BanI GGYRCC 1 cut(s) 341
BarI GAAGNNNNNNTAC 2 cut(s) 359, 391
BbsI GAAGAC 1 cut(s) 536
BccI CCATC 4 cut(s) 26, 198, 566, 570
BceAI ACGGC 1 cut(s) 649
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 2 cut(s) 553, 583
BlpI GCTNAGC 1 cut(s) 617
BlsI GCNGC 2 cut(s) 554, 584
BmcAI AGTACT 1 cut(s) 64
Bme1390I CCNGG 2 cut(s) 55, 94
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 3 cut(s) 6, 161, 343
BmrFI CCNGG 2 cut(s) 55, 94
BmsI GCATC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 536
Bpu1102I GCTNAGC 1 cut(s) 617
BpuEI CTTGAG 2 cut(s) 113, 632
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 27, 540
BsaXI ACNNNNNCTCC 2 cut(s) 551, 581
Bsc4I CCNNNNNNNGG 2 cut(s) 503, 576
Bse21I CCTNAGG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 2 cut(s) 27, 540
BseGI GGATG 3 cut(s) 37, 298, 581
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 503, 576
BseMII CTCAG 2 cut(s) 191, 348
BseSI GKGCMC 1 cut(s) 306
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 2 cut(s) 248, 653
BshNI GGYRCC 1 cut(s) 341
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 2 cut(s) 503, 576
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 8 cut(s) 112, 186, 212, 282, 314, 361, 380, 458
Bsp1720I GCTNAGC 1 cut(s) 617
Bsp68I TCGCGA 1 cut(s) 248
BspACI CCGC 3 cut(s) 552, 582, 651
BspCNI CTCAG 2 cut(s) 192, 349
BspFNI CGCG 2 cut(s) 248, 653
BspLI GGNNCC 3 cut(s) 6, 161, 343
BspPI GGATC 5 cut(s) 194, 220, 369, 388, 466
BspT107I GGYRCC 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 27, 540
BssMI GATC 8 cut(s) 112, 186, 212, 282, 314, 361, 380, 458
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 2 cut(s) 506, 593
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 3 cut(s) 200, 357, 617
BstF5I GGATG 3 cut(s) 37, 298, 581
BstFNI CGCG 2 cut(s) 248, 653
BstKTI GATC 8 cut(s) 115, 189, 215, 285, 317, 364, 383, 461
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 8 cut(s) 112, 186, 212, 282, 314, 361, 380, 458
BstMWI GCNNNNNNNGC 3 cut(s) 79, 84, 407
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 2 cut(s) 53, 92
BstSFI CTRYAG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 2 cut(s) 248, 653
BstV2I GAAGAC 1 cut(s) 536
BstX2I RGATCY 3 cut(s) 186, 380, 458
BstYI RGATCY 3 cut(s) 186, 380, 458
Bsu36I CCTNAGG 1 cut(s) 357
BtsCI GGATG 3 cut(s) 37, 298, 581
BtsIMutI CAGTG 1 cut(s) 598
BtuMI TCGCGA 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 159
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 3 cut(s) 63, 208, 342
CviAII CATG 4 cut(s) 299, 307, 499, 526
CviQI GTAC 3 cut(s) 63, 208, 342
DdeI CTNAG 3 cut(s) 200, 357, 617
DpnI GATC 8 cut(s) 114, 188, 214, 284, 316, 363, 382, 460
DpnII GATC 8 cut(s) 112, 186, 212, 282, 314, 361, 380, 458
Eco47I GGWCC 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 390
Eco81I CCTNAGG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 92
FaeI CATG 4 cut(s) 302, 310, 502, 529
FaiI YATR 8 cut(s) 300, 308, 369, 447, 456, 464, 500, 527
FaqI GGGAC 1 cut(s) 145
FatI CATG 4 cut(s) 298, 306, 498, 525
FauI CCCGC 1 cut(s) 658
Fnu4HI GCNGC 2 cut(s) 553, 583
FokI GGATG 3 cut(s) 44, 305, 588
Fsp4HI GCNGC 2 cut(s) 553, 583
GluI GCNGC 2 cut(s) 553, 583
GsaI CCCAGC 1 cut(s) 19
HapII CCGG 1 cut(s) 54
Hin1II CATG 4 cut(s) 302, 310, 502, 529
HinfI GANTC 4 cut(s) 100, 123, 178, 626
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 518
Hpy188I TCNGA 6 cut(s) 117, 183, 292, 380, 541, 571
Hpy188III TCNNGA 2 cut(s) 247, 263
HpyAV CCTTC 2 cut(s) 494, 649
HpyCH4III ACNGT 2 cut(s) 506, 593
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 5 cut(s) 78, 170, 310, 389, 502
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 84, 407
HpyF3I CTNAG 3 cut(s) 200, 357, 617
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 4 cut(s) 302, 310, 502, 529
KpnI GGTACC 1 cut(s) 345
Kzo9I GATC 8 cut(s) 112, 186, 212, 282, 314, 361, 380, 458
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 8 cut(s) 29, 64, 67, 79, 106, 212, 369, 396
LweI GCATC 1 cut(s) 398
MabI ACCWGGT 1 cut(s) 92
MaeII ACGT 1 cut(s) 231
MalI GATC 8 cut(s) 114, 188, 214, 284, 316, 363, 382, 460
MboI GATC 8 cut(s) 112, 186, 212, 282, 314, 361, 380, 458
MboII GAAGA 6 cut(s) 286, 289, 292, 375, 396, 541
MfeI CAATTG 1 cut(s) 346
MflI RGATCY 3 cut(s) 186, 380, 458
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 1 cut(s) 346
MlyI GAGTC 1 cut(s) 620
MnlI CCTC 9 cut(s) 22, 29, 137, 177, 352, 498, 502, 535, 539
MroXI GAANNNNTTC 1 cut(s) 483
MseI TTAA 2 cut(s) 372, 426
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 55, 94
MunI CAATTG 1 cut(s) 346
MvaI CCWGG 1 cut(s) 94
MvnI CGCG 2 cut(s) 248, 653
MwoI GCNNNNNNNGC 3 cut(s) 79, 84, 407
NciI CCSGG 1 cut(s) 55
NdeII GATC 8 cut(s) 112, 186, 212, 282, 314, 361, 380, 458
NlaIII CATG 4 cut(s) 302, 310, 502, 529
NlaIV GGNNCC 3 cut(s) 6, 161, 343
NruI TCGCGA 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 3 cut(s) 100, 123, 178
PkrI GCNGC 2 cut(s) 554, 584
PleI GAGTC 1 cut(s) 620
PpsI GAGTC 1 cut(s) 620
PpuMI RGGWCCY 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 3 cut(s) 6, 161, 343
PspPI GGNCC 1 cut(s) 159
PspPPI RGGWCCY 1 cut(s) 159
PsuI RGATCY 3 cut(s) 186, 380, 458
PvuII CAGCTG 1 cut(s) 410
RruI TCGCGA 1 cut(s) 248
RsaI GTAC 3 cut(s) 64, 209, 343
RsaNI GTAC 3 cut(s) 63, 208, 342
SaqAI TTAA 2 cut(s) 372, 426
SatI GCNGC 2 cut(s) 553, 583
Sau3AI GATC 8 cut(s) 112, 186, 212, 282, 314, 361, 380, 458
Sau96I GGNCC 1 cut(s) 159
ScaI AGTACT 1 cut(s) 64
SchI GAGTC 1 cut(s) 620
ScrFI CCNGG 2 cut(s) 55, 94
SduI GDGCHC 1 cut(s) 306
SexAI ACCWGGT 1 cut(s) 92
SfaNI GCATC 1 cut(s) 398
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 128, 611
SmoI CTYRAG 2 cut(s) 128, 611
Sse9I AATT 1 cut(s) 346
SsiI CCGC 3 cut(s) 552, 582, 651
StyD4I CCNGG 2 cut(s) 53, 92
TaaI ACNGT 2 cut(s) 506, 593
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 638
TasI AATT 1 cut(s) 346
TatI WGTACW 1 cut(s) 62
TauI GCSGC 2 cut(s) 555, 585
TfiI GAWTC 3 cut(s) 100, 123, 178
Tru1I TTAA 2 cut(s) 372, 426
Tru9I TTAA 2 cut(s) 372, 426
TscAI CASTG 1 cut(s) 598
TspDTI ATGAA 3 cut(s) 287, 479, 542
TspGWI ACGGA 2 cut(s) 225, 485
TspRI CASTG 1 cut(s) 598
VpaK11BI GGWCC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 483
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.